RNA 3D Hub

JAR3D Query RF03064-CCF-3.48 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 2 3-way junction loop

Column numbers: 14-20, 23-55, 129-131 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    A-CAAGA*U-------------------------------U*A-U  200

    
    U-AUAUC*A-------------------------------C*G-G   83

    
    U-AUAUC*A-------------------------------U*A-G   72

    
    C-ACAGC*A-------------------------------C*G-G   43

    
    C-AUAUC*A-------------------------------C*G-G   37

    
    A-CAAGG*C-------------------------------U*A-U   34

    
    C-AUAUC*A-------------------------------U*A-G   28

    
    U-ACAUC*A-------------------------------C*G-G   26

    
    U-ACAGC*A-------------------------------C*G-G   25

    
    A-CAAGA*C-------------------------------U*A-U   24

    
    U-AUACC*A-------------------------------C*G-G   24

    
    A-CUAGA*U-------------------------------U*A-U   23

    
    A-CAGGA*U-------------------------------U*A-U   19

    
    U-AUAGC*A-------------------------------C*G-G   18

    
    U-AUAGC*A-------------------------------U*A-G   15

    
    C-AUACA*A-------------------------------U*A-G   14

    
    U-ACAUC*A-------------------------------U*A-G   13

    
    G-ACACC*A-------------------------------C*G-C   11

    
    C-ACAUC*A-------------------------------C*G-G   10

    
    C-ACAUC*A-------------------------------U*A-G   10

    
    C-AUACC*A-------------------------------C*G-G   10

    
    U-AUAUU*A-------------------------------C*G-G   10

    
    U-AUAUC*A-------------------------------G*U-G    9

    
    A-CACGA*U-------------------------------U*A-U    8

    
    A-CUAGA*U-------------------------------U*G-U    8

    
    G-AUACC*A-------------------------------C*G-C    8

    
    U-AUAAC*A-------------------------------U*A-G    8

    
    U-AUAUC*A-------------------------------C*G-A    8

    
    A-CAAAA*A-------------------------------U*A-U    7

    
    A-CCAGA*U-------------------------------U*A-U    7

    
    C-ACACC*A-------------------------------U*A-G    7

    
    U-ACACC*A-------------------------------U*A-G    7

    
    U-AUACC*A-------------------------------U*A-G    7

    
    A-AAAAC*A-------------------------------U*A-U    6

    
    A-CAAAA*C-------------------------------U*A-U    6

    
    A-GAAGA*U-------------------------------U*A-U    6

    
    C-AUAAA*A-------------------------------C*G-G    6

    
    C-AUAAA*A-------------------------------U*A-G    6

    
    C-AUAAC*A-------------------------------U*A-G    6

    
    A-AAAGA*A-------------------------------U*A-U    5

    
    A-CAAAA*U-------------------------------U*A-U    5

    
    A-CAUGA*U-------------------------------U*A-U    5

    
    A-CAUGG*C-------------------------------U*A-U    5

    
    A-CUUGA*U-------------------------------U*A-U    5

    
    A-UACAA*A-------------------------------U*A-U    5

    
    U-ACAAA*A-------------------------------C*G-A    5

    
    U-ACACC*A-------------------------------C*G-G    5

    
    ACUUAGG*C-------------------------------U*A-U    4

    
    A-UAAAA*A-------------------------------U*A-U    4

    
    C-AUACC*A-------------------------------U*A-G    4

    
    G-AUACG*A-------------------------------C*G-C    4

    
    U-ACACC*A-------------------------------C*G-A    4

    
    U-AUACC*A-------------------------------C*G-A    4

    
    U-AUAUC*A-------------------------------G*G-G    4

    
    C-ACACC*C-------------------------------C*GGG    3

    
    A-CUAGG*C-------------------------------U*A-U    3

    
    C-AUAGC*A-------------------------------C*G-G    3

    
    C-CUAUC*A-------------------------------C*G-G    3

    
    G-AUAUC*A-------------------------------C*G-C    3

    
    U-AGAUC*A-------------------------------C*G-G    3

    
    U-AUAGA*A-------------------------------C*G-G    3

    
    U-AUGUC*A-------------------------------C*G-G    3

    
    U-CUAUC*A-------------------------------U*A-G    3

    
    A-CAUAG*GUUCCAACAUUGGUUGUUCCAACAUUGGAACUU*A-U    2

    
    C-AUAUC*AA------------------------------C*G-G    2

    
    UAUAAUC*A-------------------------------C*G-A    2

    
    A-AAAAC*U-------------------------------U*A-U    2

    
    A-AGACC*A-------------------------------C*G-A    2

    
    A-CAAGG*U-------------------------------U*A-U    2

    
    A-CAAUA*U-------------------------------U*A-U    2

    
    A-CACAA*A-------------------------------U*A-U    2

    
    A-CAUAA*A-------------------------------U*A-U    2

    
    A-CAUGA*C-------------------------------U*A-U    2

    
    A-CGAGA*U-------------------------------U*A-U    2

    
    A-CUAGA*A-------------------------------U*A-U    2

    
    A-UAAGA*U-------------------------------U*A-U    2

    
    A-UACAA*U-------------------------------U*A-U    2

    
    A-UAUAA*A-------------------------------U*A-U    2

    
    C-AAAAA*A-------------------------------C*G-G    2

    
    C-ACACC*A-------------------------------C*G-G    2

    
    C-AUAAC*A-------------------------------C*G-G    2

    
    C-GUAUC*A-------------------------------C*G-G    2

    
    G-ACACG*A-------------------------------C*G-C    2

    
    U-AAACC*A-------------------------------C*G-G    2

    
    U-AAAGC*A-------------------------------C*G-G    2

    
    U-AAAUC*A-------------------------------C*G-G    2

    
    U-AAGCC*A-------------------------------C*G-G    2

    
    U-AGAAC*A-------------------------------C*G-G    2

    
    U-AUAAC*A-------------------------------C*G-G    2

    
    U-AUAGU*A-------------------------------U*A-G    2

    
    U-AUAUA*A-------------------------------C*G-G    2

    
    U-AUAUA*A-------------------------------G*U-G    2

    
    U-AUAUC*A-------------------------------C*A-G    2

    
    U-AUAUC*A-------------------------------U*G-G    2

    
    U-CUACC*A-------------------------------U*A-G    2

    
    U-GCACC*A-------------------------------C*G-A    2

    
    U-GCAUC*A-------------------------------C*G-G    2

    
    U-GUAAG*A-------------------------------U*U-G    2

    
    U-GUAUC*A-------------------------------C*G-A    2

    
    U-GUAUC*A-------------------------------C*G-G    2

    
    A-CAUAG*GUUCCA-ACAU--------------UGGAACUU*A-U    1

    
    A-CAUUG*GUUCCA----ACAU-----------UGGAACUU*A-U    1

    
    C-AAACA*A--------------------GUA--------C*G-G    1

    
    U-AUAUC*C------AA----------------------AC*G-G    1

    
    CAUACUC*A------------------------------CC*G-G    1

    
    U-UUAUA*A-------AA----------------------C*A-G    1

    
    U-UUAUA*AAA-----------------------------C*A-G    1

    
    A-CUUAG*U------------------------------CU*A-U    1

    
    A-CUUAG*UC------------------------------U*A-U    1

    
    A-CUUUG*UC------------------------------U*A-U    1

    
    A-UAAAA*A------------------------------AU*A-U    1

    
    C-AUAAA*A------------------------------AC*G-G    1

    
    C-AUAUC*A-------------------------------C*GGG    1

    
    U-AUAAA*AA------------------------------C*G-A    1

    
    U-AUAGA*AA------------------------------C*G-G    1

    
    U-AUAGC*A-------------------------------C*GGA    1

    
    U-AUAUA*AA------------------------------C*G-G    1

    
    U-AUAUC*A------------------------------AC*G-G    1

    
    UUACAUC*A-------------------------------C*G-G    1

    
    A-AAAAC*A-------------------------------G*A-U    1

    
    A-AAAGA*U-------------------------------U*A-U    1

    
    A-AUAAC*A-------------------------------U*A-G    1

    
    A-AUAGA*U-------------------------------U*A-U    1

    
    A-CAACA*U-------------------------------U*A-U    1

    
    A-CAAGA*C-------------------------------A*A-U    1

    
    A-CAAGU*U-------------------------------U*A-U    1

    
    A-CAAUA*C-------------------------------U*A-U    1

    
    A-CACAA*C-------------------------------U*A-U    1

    
    A-CAGGA*C-------------------------------U*A-U    1

    
    A-CAGGG*C-------------------------------U*A-U    1

    
    A-CGUGA*U-------------------------------U*A-U    1

    
    A-CUCGA*U-------------------------------U*A-U    1

    
    A-CUGGA*U-------------------------------U*A-U    1

    
    A-CUUGA*A-------------------------------U*A-U    1

    
    A-CUUGA*U-------------------------------U*G-U    1

    
    A-GAAGA*U-------------------------------U*G-U    1

    
    A-GAUGA*U-------------------------------U*A-U    1

    
    A-UAAGG*C-------------------------------U*A-U    1

    
    A-UAGGA*A-------------------------------U*A-U    1

    
    A-UUAGA*U-------------------------------U*G-U    1

    
    C-AAACA*A-------------------------------A*G-G    1

    
    C-ACACA*A-------------------------------C*G-G    1

    
    C-ACAUC*A-------------------------------C*A-G    1

    
    C-AUAUC*A-------------------------------U*A-C    1

    
    C-AUAUC*A-------------------------------U*G-G    1

    
    C-AUAUU*A-------------------------------U*A-G    1

    
    C-AUGCA*A-------------------------------U*A-G    1

    
    C-AUGCC*A-------------------------------U*A-G    1

    
    C-GAAAA*A-------------------------------C*G-G    1

    
    C-GCAUC*A-------------------------------C*G-G    1

    
    C-GGACC*A-------------------------------C*G-G    1

    
    C-GUAAC*A-------------------------------C*G-G    1

    
    G-ACGCC*A-------------------------------C*G-C    1

    
    G-AUACA*A-------------------------------C*G-C    1

    
    G-UGACC*G-------------------------------C*G-G    1

    
    U-AAAAC*A-------------------------------C*G-G    1

    
    U-AAAUC*A-------------------------------A*U-G    1

    
    U-AAUAU*A-------------------------------C*G-A    1

    
    U-ACAAC*A-------------------------------C*G-G    1

    
    U-ACACA*A-------------------------------U*A-G    1

    
    U-ACAGC*A-------------------------------U*A-G    1

    
    U-ACAGU*A-------------------------------C*G-G    1

    
    U-ACAUA*A-------------------------------C*G-G    1

    
    U-ACAUC*A-------------------------------C*G-A    1

    
    U-ACAUU*A-------------------------------C*G-A    1

    
    U-ACCCC*A-------------------------------C*G-G    1

    
    U-ACGCC*A-------------------------------C*G-A    1

    
    U-AGAGC*A-------------------------------C*G-G    1

    
    U-AGAUC*A-------------------------------U*A-G    1

    
    U-AUAAC*A-------------------------------C*G-A    1

    
    U-AUAAG*A-------------------------------C*G-G    1

    
    U-AUAAG*A-------------------------------G*U-G    1

    
    U-AUAAG*A-------------------------------U*U-G    1

    
    U-AUAAU*A-------------------------------U*A-G    1

    
    U-AUACA*A-------------------------------C*G-A    1

    
    U-AUACA*A-------------------------------U*A-G    1

    
    U-AUACC*A-------------------------------G*G-G    1

    
    U-AUACC*A-------------------------------G*U-G    1

    
    U-AUACC*A-------------------------------U*A-A    1

    
    U-AUACU*A-------------------------------U*A-A    1

    
    U-AUAUA*G-------------------------------C*G-A    1

    
    U-AUAUC*A-------------------------------C*G-C    1

    
    U-AUAUC*A-------------------------------U*U-G    1

    
    U-AUAUU*A-------------------------------C*G-A    1

    
    U-AUAUU*A-------------------------------U*A-G    1

    
    U-AUGAC*A-------------------------------C*G-G    1

    
    U-AUGAC*A-------------------------------U*A-G    1

    
    U-AUGCC*A-------------------------------C*G-A    1

    
    U-AUGCC*A-------------------------------U*A-G    1

    
    U-AUGGC*A-------------------------------C*G-G    1

    
    U-AUUUG*C-------------------------------C*G-A    1

    
    U-CUAUC*A-------------------------------C*G-A    1

    
    U-GCAUC*A-------------------------------U*A-G    1

    
    U-GUAUC*A-------------------------------C*A-G    1

    
    U-GUAUC*A-------------------------------G*G-G    1

    
    U-UAUAC*A-------------------------------C*G-A    1

    
    A-AAU--*-------------------------------GC*G-U    1

    
    C-AAA--*A-------------------------------U*A-G    1

    
    C-AUA--*A-------------------------------U*A-G    1

    
    U-AAA--*A-------------------------------C*G-A    1

    
    U-----U*-------------------------------UC*G-G    1

    
    Omitted sequenced and counts

    
    U-AUACA*--------------------------------C*G-G   30

    
    U-AUAUA*--------------------------------C*G-G   27

    
    U-AUACA*--------------------------------C*G-A   20

    
    C-AUACA*--------------------------------C*G-G   13

    
    U-ACAUA*--------------------------------C*G-G   11

    
    C-AAACA*--------------------------------C*G-G   10

    
    A-CAAAA*--------------------------------U*A-U    8

    
    C-AAAGA*--------------------------------C*G-G    7

    
    C-AUAUC*--------------------------------C*G-G    7

    
    U-ACACA*--------------------------------C*G-G    6

    
    C-ACACC*--------------------------------C*G-G    5

    
    U-AUAAA*--------------------------------C*G-A    5

    
    U-UAAUA*--------------------------------C*G-G    5

    
    C-AAGGA*--------------------------------C*G-G    4

    
    C-AUAAA*--------------------------------U*A-G    4

    
    C-AAAAA*--------------------------------C*G-G    3

    
    C-ACAUC*--------------------------------C*G-G    3

    
    C-ACUCA*--------------------------------C*G-G    3

    
    C-AUACA*--------------------------------U*A-G    3

    
    C-AUACC*--------------------------------C*G-G    3

    
    C-GGACA*--------------------------------C*G-G    3

    
    U-AAGAA*--------------------------------U*A-A    3

    
    U-AAGAC*--------------------------------U*A-A    3

    
    U-AUAUA*--------------------------------C*G-A    3

    
    U-GUACA*--------------------------------C*G-A    3

    
    A-AAACA*--------------------------------U*A-U    2

    
    A-UAAAA*--------------------------------U*A-U    2

    
    C-AAAAC*--------------------------------C*G-G    2

    
    C-AAACA*--------------------------------U*A-G    2

    
    C-AAUCA*--------------------------------C*G-G    2

    
    C-ACACA*--------------------------------C*G-G    2

    
    C-ACAUA*--------------------------------C*G-G    2

    
    C-AUAUA*--------------------------------C*G-G    2

    
    C-GAAAA*--------------------------------C*G-G    2

    
    G-AAACC*--------------------------------C*G-A    2

    
    G-AGACA*--------------------------------C*G-C    2

    
    U-AAACA*--------------------------------C*G-A    2

    
    U-AAGAA*--------------------------------C*G-A    2

    
    U-AAGCA*--------------------------------C*G-A    2

    
    U-ACACC*--------------------------------C*G-A    2

    
    U-ACAUA*--------------------------------C*G-A    2

    
    U-AGACC*--------------------------------C*G-A    2

    
    U-AUAAA*--------------------------------C*G-G    2

    
    U-GCACA*--------------------------------C*G-A    2

    
    A-CACGA*U-------------------------------U*A-N    1

    
    A-AAAAG*--------------------------------U*A-U    1

    
    A-AGUUU*--------------------------------U*G-U    1

    
    A-CAAGC*--------------------------------U*A-U    1

    
    A-GAAGA*--------------------------------U*A-U    1

    
    C-AAACA*--------------------------------A*G-G    1

    
    C-AAACA*--------------------------------C*A-G    1

    
    C-AAAGC*--------------------------------C*G-G    1

    
    C-AAAUA*--------------------------------C*G-G    1

    
    C-AACCA*--------------------------------C*G-G    1

    
    C-AACGA*--------------------------------C*G-G    1

    
    C-AAGAC*--------------------------------C*G-G    1

    
    C-ACACA*--------------------------------U*A-G    1

    
    C-ACCCC*--------------------------------C*G-G    1

    
    C-ACGCA*--------------------------------C*G-G    1

    
    C-AGACA*--------------------------------C*G-G    1

    
    C-ANACA*--------------------------------C*G-G    1

    
    C-AUAAA*--------------------------------C*G-G    1

    
    C-AUACC*--------------------------------U*G-G    1

    
    C-AUACG*--------------------------------C*G-G    1

    
    C-GCAUC*--------------------------------C*G-G    1

    
    C-GUACU*--------------------------------C*A-G    1

    
    G-AUGAG*--------------------------------C*G-C    1

    
    U-AAAAC*--------------------------------C*G-A    1

    
    U-AAAAC*--------------------------------U*A-A    1

    
    U-AAAAU*--------------------------------C*G-A    1

    
    U-AAACA*--------------------------------C*G-G    1

    
    U-AAACA*--------------------------------U*A-A    1

    
    U-AAACA*--------------------------------U*A-G    1

    
    U-AAAUA*--------------------------------C*G-G    1

    
    U-AACCA*--------------------------------C*G-A    1

    
    U-AAGAC*--------------------------------C*G-A    1

    
    U-AAGAC*--------------------------------U*A-G    1

    
    U-ACAAA*--------------------------------C*G-A    1

    
    U-ACAAC*--------------------------------C*G-A    1

    
    U-ACACA*--------------------------------U*G-G    1

    
    U-ACAGA*--------------------------------C*G-A    1

    
    U-ACAUC*--------------------------------C*G-G    1

    
    U-ACGAA*--------------------------------C*G-A    1

    
    U-AUACA*--------------------------------U*G-A    1

    
    U-AUAUA*--------------------------------C*U-A    1

    
    U-AUAUC*--------------------------------C*G-G    1

    
    U-AUAUC*--------------------------------U*A-G    1

    
    U-AUCUA*--------------------------------C*G-G    1

    
    U-AUGAA*--------------------------------C*G-A    1

    
    U-GAACG*--------------------------------C*G-A    1

    
    U-GUAAA*--------------------------------C*G-A    1

    
    U-GUAAC*--------------------------------C*G-A    1

    
    U-GUACA*--------------------------------U*A-G    1

    
    U-GUAUA*--------------------------------C*G-G    1

    
    U-GUGCA*--------------------------------C*G-A    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group J3_25670.1

Basepair signature:
cWW-F-F-F-cWW-F-F-cWW

69.80 -1.91 8 4

2

Motif group J3_82061.2

Basepair signature:
cWW-F-cWW-F-cWW

6.32 -46.64 7 3

3

Motif group J3_19431.1

Basepair signature:
cWW-F-cWW-tSS-F-cWW

4.74 -73.09 6 2

4

Motif group J3_47376.1

Basepair signature:
cWW-F-F-cWS-cWW-F-cWW

4.13 -62.81 8 4

5

Motif group J3_91491.2

Basepair signature:
cWW-F-tWW-tHW-cWW-F-cWW

1.84 -72.36 6 4

6

Motif group J3_19256.1

Basepair signature:
cWW-F-F-F-cWW-F-F-cWW-F

0.00 -67.77 8 4

7

Motif group J3_51910.1

Basepair signature:
cWW-F-cWW-tWS-F-F-cWW-cWW

0.00 -75.68 8 4

8

Motif group J3_04858.1

Basepair signature:
cWW-F-cWW-F-F-F-F-F-cWW

0.00 -80.54 9 5

9

Motif group J3_90744.1

Basepair signature:
cWW-F-cWW-F-F-cSS-F-F-cWW

0.00 -100.50 8 5

10

Motif group J3_84625.1

Basepair signature:
cWW-F-cWW-F-F-F-cWW-F-cWW

0.00 -111.98 8 5

11

Motif group J3_42157.1

Basepair signature:
cWW-tSH-tWW-tHW-F-F-cWW-cWW

0.00 -114.39 8 5

12

Motif group J3_82572.1

Basepair signature:
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

0.00 -116.84 9 5

13

Motif group J3_48314.1

Basepair signature:
cWW-cWW-F-cWW-F-cWW-F

0.00 -120.93 8 5

14

Motif group J3_94515.1

Basepair signature:
cWW-tWW-F-cWW-F-tHS-F-cWW

0.00 -122.67 9 6

15

Motif group J3_32852.2

Basepair signature:
cWW-tSH-tHW-F-F-cWW-cWW-F

0.00 -122.82 9 5

16

Motif group J3_98985.1

Basepair signature:
cWW-F-cWW-F-F-cSW-F-cWW

0.00 -123.42 8 4

17

Motif group J3_35321.1

Basepair signature:
cWW-cSS-F-F-F-F-cWW-F-cWW

0.00 -125.36 11 8

18

Motif group J3_58090.1

Basepair signature:
cWW-tWW-F-F-F-cWW-F-F-cWW

0.00 -127.24 9 6

19

Motif group J3_84189.2

Basepair signature:
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

0.00 -133.00 9 6

20

Motif group J3_13944.1

Basepair signature:
cWW-F-F-tSS-F-F-cWW-cWW

0.00 -138.94 10 7

21

Motif group J3_45941.1

Basepair signature:
cWW-cWS-cSH-tWH-F-F-F-F-cWW-cWW-F

0.00 -139.07 11 8

22

Motif group J3_52842.1

Basepair signature:
cWW-tHS-F-F-F-cWW-cWW

0.00 -140.66 9 5

23

Motif group J3_28621.2

Basepair signature:
cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

0.00 -140.82 7 5

24

Motif group J3_11934.2

Basepair signature:
cWW-F-cWW-F-F-tWW-F-cWW-F

0.00 -146.03 10 6

25

Motif group J3_44724.2

Basepair signature:
cWW-tSH-F-cWW-tHS-cWW-F

0.00 -152.49 9 6

26

Motif group J3_41097.1

Basepair signature:
cWW-cWW-F-cWW-cWW

0.00 -153.22 8 4

phi29 pRNA

27

Motif group J3_06579.1

Basepair signature:
cWW-F-tHS-F-tHS-F-cWW-cWW

0.00 -155.18 10 6

28

Motif group J3_05170.1

Basepair signature:
cWW-F-tSH-tWH-cSH-cWW-tWS-F-cWW

0.00 -155.91 12 8

29

Motif group J3_94652.1

Basepair signature:
cWW-F-F-F-F-F-cWW-cWW

0.00 -162.83 9 4

30

Motif group J3_89368.2

Basepair signature:
cWW-tSH-tHW-F-cWW-tHH-cWW

0.00 -163.70 11 7

Kink-turn 3-way junction

31

Motif group J3_65990.1

Basepair signature:
cWW-tHW-F-F-cWW-F-F-F-cWW-F

0.00 -165.11 10 8

32

Motif group J3_72575.1

Basepair signature:
cWW-cWW-F-cWW-cSS-cWW-F-cWW

0.00 -169.32 8 6

33

Motif group J3_89044.1

Basepair signature:
cWW-cSW-F-cWW-cSW-cWW-cHW-F-cWW

0.00 -172.38 10 7

34

Motif group J3_20650.1

Basepair signature:
cWW-F-F-F-F-cSS-cWW-cWW-F

0.00 -173.14 10 7

35

Motif group J3_22198.1

Basepair signature:
cWW-cSH-F-cWW-cSS-cWW-F

0.00 -174.84 7 5

36

Motif group J3_75187.1

Basepair signature:
cWW-cWW-tSH-F-F-F-F-tHS-cWW-cWW

0.00 -178.32 11 8

37

Motif group J3_25217.1

Basepair signature:
cWW-F-cWW-F-cWW-F-F

0.00 -180.50 9 5

38

Motif group J3_39238.2

Basepair signature:
cWW-tWH-cWW-tSW-F-F-cWW

0.00 -181.50 9 6

39

Motif group J3_02067.1

Basepair signature:
cWW-tSS-F-F-F-cWW-cWW-F-F

0.00 -182.73 10 6

40

Motif group J3_56708.1

Basepair signature:
cWW-F-cWW-F-tHW-F-F-F-cWW-F-cWW

0.00 -188.00 11 7

41

Motif group J3_99170.1

Basepair signature:
cWW-tSH-tWW-tHW-cWW-F-cWW-F

0.00 -188.75 10 6

42

Motif group J3_19286.1

Basepair signature:
cWW-F-F-tSH-F-cWW-F-F-F-cWW-F

0.00 -190.00 10 8

43

Motif group J3_33851.1

Basepair signature:
cWW-tSH-F-F-tHS-cWW-cWW-F-F

0.00 -192.02 10 8

44

Motif group J3_30104.1

Basepair signature:
cWW-F-F-cWW-cWW

0.00 -192.37 7 4

45

Motif group J3_93059.1

Basepair signature:
cWW-tWH-cWW-tSH-F-cWW-cWW

0.00 -195.96 8 5

46

Motif group J3_89737.1

Basepair signature:
cWW-F-cWW-tSS-cWW-F-cWW-cWW

0.00 -199.32 11 9

5S rRNA junction

47

Motif group J3_98102.1

Basepair signature:
cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

0.00 -201.65 13 10

48

Motif group J3_56052.2

Basepair signature:
cWW-F-cWW-cWW-F

0.00 -202.06 7 4

49

Motif group J3_08465.1

Basepair signature:
cWW-cWW-F-F-tHW-F-F-tHH-cWW-cWW

0.00 -204.44 12 8

50

Motif group J3_18709.1

Basepair signature:
cWW-F-tWW-cSH-cWW-cWW-F

0.00 -208.35 11 6

51

Motif group J3_37410.1

Basepair signature:
cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F

0.00 -210.11 12 9

52

Motif group J3_15893.1

Basepair signature:
cWW-tSH-cSS-tHS-F-cWW-cWW-cWW

0.00 -210.12 8 6

C-di-AMP riboswitch

53

Motif group J3_98484.1

Basepair signature:
cWW-F-F-tSH-cHW-F-cWW-tSS-cSS-F-cWW-cWW

0.00 -210.45 11 8

54

Motif group J3_85054.2

Basepair signature:
cWW-tSH-F-tWW-tHS-cWW-cWW-F

0.00 -217.81 11 8

55

Motif group J3_32857.1

Basepair signature:
cWW-F-F-F-F-F-cWW-F-cWW-F-F-F-F

0.00 -219.28 13 9

56

Motif group J3_06335.1

Basepair signature:
cWW-F-F-tSH-cSS-tWH-F-cWW-cWW-F

0.00 -221.97 12 8

57

Motif group J3_32030.1

Basepair signature:
cWW-tWH-F-F-cWW-tHS-F-F-cWW-F

0.00 -229.20 11 7

58

Motif group J3_96170.1

Basepair signature:
cWW-cSH-cWS-tHS-cWH-F-F-cWW-F-tHS-F-cWW-F

0.00 -229.70 12 9

59

Motif group J3_58453.1

Basepair signature:
cWW-cWH-F-cWW-tWS-F-F-cWW-F

0.00 -233.29 12 9

60

Motif group J3_64069.1

Basepair signature:
cWW-tHS-F-F-F-cWW-cWW-F-F

0.00 -233.47 11 9

61

Motif group J3_00584.1

Basepair signature:
cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

0.00 -234.77 11 6

62

Motif group J3_72804.1

Basepair signature:
cWW-F-F-F-F-F-tHW-F-F-cWW-cWW-F

0.00 -236.03 15 11

63

Motif group J3_93637.1

Basepair signature:
cWW-cWW-F-F-F-F-F-cWW-cWW-F-F

0.00 -237.05 11 8

64

Motif group J3_96372.1

Basepair signature:
cWW-cSH-cWS-F-F-F-tHW-F-cWW-F-cWW-F

0.00 -239.32 12 9

65

Motif group J3_47707.1

Basepair signature:
cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F

0.00 -245.83 13 11

66

Motif group J3_97609.1

Basepair signature:
cWW-tSH-tHW-F-cWW-tHH-F-cWW-F

0.00 -246.10 12 8

67

Motif group J3_38616.1

Basepair signature:
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

0.00 -246.20 11 9

68

Motif group J3_38446.1

Basepair signature:
cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F

0.00 -257.57 13 9

69

Motif group J3_36387.1

Basepair signature:
cWW-F-F-F-tWW-tHW-tHW-cWW-F-F-cWW

0.00 -268.50 11 8

70

Motif group J3_52655.1

Basepair signature:
cWW-tSH-cWW-F-cWW-cWW

0.00 -271.13 9 7

71

Motif group J3_90256.1

Basepair signature:
cWW-cWS-F-F-F-F-F-F-cWW-F-tHS-F-cWW-F

0.00 -274.87 14 11

72

Motif group J3_47248.1

Basepair signature:
cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F

0.00 -279.38 13 11

73

Motif group J3_11279.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cSS-tWW-F-F-cWW-cWW-F

0.00 -282.90 13 10

74

Motif group J3_82365.1

Basepair signature:
cWW-F-F-F-cWW-cWW-F

0.00 -284.68 8 6

75

Motif group J3_52917.1

Basepair signature:
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

0.00 -284.77 11 9

76

Motif group J3_08394.2

Basepair signature:
cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F

0.00 -290.21 14 12

77

Motif group J3_38151.1

Basepair signature:
cWW-F-F-F-cWW-cWW-F

0.00 -290.82 9 6

78

Motif group J3_32601.2

Basepair signature:
cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

0.00 -295.09 11 9

79

Motif group J3_69441.1

Basepair signature:
cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

0.00 -334.73 13 11

80

Motif group J3_37047.2

Basepair signature:
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F

0.00 -353.97 14 12

81

Motif group J3_59914.1

Basepair signature:
cWW-F-cWW-F-cWW-F

0.00 -357.95 7 5

82

Motif group J3_68440.1

Basepair signature:
cWW-cWW-F-F-F-cWW-F-F-cWW-F-F-F-F-F-F

0.00 -381.09 17 13

83

Motif group J3_36499.1

Basepair signature:
cWW-tSS-tSH-tHW-tHS-cWW-cWW-F

0.00 -383.50 11 8

84

Motif group J3_98298.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F

0.00 -396.17 19 17

85

Motif group J3_83516.1

Basepair signature:
cWW-F-F-F-tWW-F-tSH-tSS-F-F-F-F-F-cWW-cWW-F-F-F

0.00 -403.85 18 17

86

Motif group J3_65070.2

Basepair signature:
cWW-tWH-cWW-tSH-F-cWW-F

0.00 -452.27 11 10

87

Motif group J3_79305.1

Basepair signature:
cWW-cSH-cWW-cWH-F-tSW-F-F-F-F-F-cWW-cWW-F

0.00 -491.91 18 17

88

Motif group J3_86907.1

Basepair signature:
cWW-F-F-F-tSW-F-tSH-tSS-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F

0.00 -505.74 22 20

Coloring options: