Motif HL_36427.1 Version HL_36427.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_3MJA_001 | 3MJA | 0.3691 | 1 | Anticodon loop related | B | Domain 3 of the cricket paralysis virus intergenic region IRES RNA | A | 6184 | U | 6185 | U | 6186 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | U | 6193 | cWW | ||
2 | HL_4MGN_003 | 4MGN | 0.3388 | 0 | Anticodon loop related | B | tRNA-glycine | C | 30 | U | 31 | U | 32 | G | 33 | C | 34 | C | 35 | A | 36 | A | 37 | G | 38 | cWW | ||
3 | HL_4R4V_001 | 4R4V | 0.2101 | 0 | Anticodon loop related | A | VS ribozyme RNA | C | 626 | G | 627 | U | 628 | C | 629 | G | 630 | U | 631 | C | 632 | G | 633 | G | 634 | cWW | tSH | |
4 | HL_1N33_036 | 1N33 | 0.1962 | 0 | tRNA anticodon loop | Y | ANTICODON STEM-LOOP OF SER TRANSFER RNA | C | 31 | C | 32 | U | 33 | G | 34 | G | 35 | A | 36 | A | 37 | A | 38 | G | 39 | cWW | ||
5 | HL_3TUP_002 | 3TUP | 0.2156 | 0 | tRNA anticodon loop | T | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
6 | HL_7K98_002 | 7K98 | 0.2544 | 0 | tRNA anticodon loop | C | tRNA | C | 32 | C | 33 | U | 34 | G | 35 | A | 36 | A | 37 | A | 38 | A | 39 | G | 40 | cWW | ntSH | |
7 | HL_4YCO_002 | 4YCO | 0.1658 | 0 | tRNA anticodon loop | D | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
8 | HL_6CAP_035 | 6CAP | 0.1517 | 0 | tRNA anticodon loop | W | RNA (15-mer) | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
9 | HL_6ORD_036 | 6ORD | 0.1715 | 0 | tRNA anticodon loop | QY | tRNA | C | 31 | U | 32 | U | 33 | G | 34 | G | 35 | C | 36 | A | 37 | A | 38 | G | 39 | cWW | ||
10 | HL_6GSK_203 | 6GSK | 0.1787 | 0 | tRNA anticodon loop | 1K | tRNA | C | 31 | U | 32 | U | 33 | G | 34 | G | 35 | U | 36 | AET | 37 | A | 38 | G | 39 | cWW | ||
11 | HL_4V87_107 | 4V87 | 0.1666 | 0 | tRNA anticodon loop | BB | TRNA-LEU | C | 32 | U | 33 | U | 34 | G | 35 | A | 36 | G | 37 | G | 38 | U | 39 | G | 40 | cWW | ||
12 | HL_4V9I_039 | 4V9I | 0.1691 | 0 | tRNA anticodon loop | AY | tRNA | U | 31 | C | 32 | U | 33 | C | 34 | G | 35 | A | 36 | A | 37 | A | 38 | A | 39 | cWW | ||
13 | HL_5IBB_210 | 5IBB | 0.1437 | 0 | tRNA anticodon loop | 1L | tRNA | C | 31 | C | 32 | U | 33 | U | 34 | A | 35 | C | 36 | A | 37 | A | 38 | G | 39 | cWW | ncWW | |
14 | HL_4B3R_034 | 4B3R | 0.1215 | 0 | tRNA anticodon loop | Z | RNA (15-mer) | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
15 | HL_7U2I_104 | 7U2I | 0.0000 | 0 | tRNA anticodon loop | 1w | tRNA | C | 31 | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | A | 37 | A | 38 | G | 39 | cWW | ||
16 | HL_7VNV_002 | 7VNV | 0.1444 | 0 | tRNA anticodon loop | A | tRNA | C | 31 | OMC | 32 | U | 33 | OMU | 34 | A | 35 | C | 36 | A | 37 | A | 38 | G | 39 | cWW | ntSHa | |
17 | HL_6NTA_138 | 6NTA | 0.1939 | 0 | tRNA anticodon loop | XV | P-site ASLPro | G | 31 | U | 32 | U | 33 | C | 34 | G | 35 | G | 36 | 1MG | 37 | A | 38 | C | 39 | cWW | ||
18 | HL_4WZD_238 | 4WZD | 0.1506 | 0 | tRNA anticodon loop | 2K | tRNA | A | 32||||P_1 | C | 33||||P_1 | U | 34||||P_1 | QUO | 35||||P_1 | U | 36||||P_1 | A | 37||||P_1 | MIA | 38||||P_1 | A | 39||||P_1 | PSU | 40||||P_1 | cWW | ||
19 | HL_4TUE_034 | 4TUE | 0.1572 | 0 | tRNA anticodon loop | QV | tRNA | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
20 | HL_6CFJ_107 | 6CFJ | 0.1396 | 0 | tRNA anticodon loop | 1x | tRNA | G | 31 | 5MC | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
21 | HL_5E81_212 | 5E81 | 0.1654 | 0 | tRNA anticodon loop | 2K | tRNA | G | 32 | OMC | 33 | U | 34 | C | 35 | A | 36 | U | 37 | A | 38 | A | 39 | C | 40 | cWW | ||
22 | HL_4V9Q_214 | 4V9Q | 0.1842 | 0 | tRNA anticodon loop | DV | tRNA | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
23 | HL_4V50_137 | 4V50 | 0.1847 | 0 | tRNA anticodon loop | CW | PHE TRNA (UNMODIFIED BASES) | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ncWW | |
24 | HL_4WT8_216 | 4WT8 | 0.1892 | 0 | tRNA anticodon loop | D4 | tRNA | G | 32 | C | 33 | U | 34 | C | 35 | A | 36 | U | 37 | A | 38 | A | 39 | C | 40 | cWW | ||
25 | HL_4V5A_138 | 4V5A | 0.2401 | 0 | tRNA anticodon loop | CV | P-SITE RNA ASL-PHE | A | 30 | U | 31 | U | 32 | G | 33 | A | 34 | A | 35 | A | 36 | A | 37 | U | 38 | cWW | ||
26 | HL_7OSM_116 | 7OSM | 0.2206 | 0 | tRNA anticodon loop | ASIT | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | YG | 37 | A | 38 | U | 39 | ncWW | ||
27 | HL_7QR4_001 | 7QR4 | 0.2108 | 0 | Anticodon loop related | B | RNA CPEB3 ribozyme | G | 19 | U | 20 | U | 21 | C | 22 | A | 23 | C | 24 | G | 25 | U | 26 | C | 27 | cWW | ||
28 | HL_7QR3_001 | 7QR3 | 0.1957 | 0 | Anticodon loop related | C | chimpanzee CPEB3 ribozyme | G | 19 | U | 20 | U | 21 | C | 22 | A | 23 | C | 24 | G | 25 | U | 26 | C | 27 | cWW | ntSHa | |
29 | HL_6UFM_002 | 6UFM | 0.1634 | 0 | tRNA anticodon loop | A | tRNA | G | 32 | C | 33 | U | 34 | G | 35 | A | 36 | U | 37 | A | 38 | A | 39 | C | 40 | cWW | ||
30 | HL_2AZX_005 | 2AZX | 0.1743 | 0 | tRNA anticodon loop | D | 72-MER | A | 531 | C | 532 | U | 533 | C | 534 | C | 535 | A | 536 | G | 537 | A | 538 | U | 539 | cWW | ||
31 | HL_6UGG_005 | 6UGG | 0.2219 | 0 | tRNA anticodon loop | B | tRNA | C | 31 | C | 32 | U | 33 | G | 34 | U | 35 | C | 36 | A | 37 | C | 38 | G | 39 | cWW | ncWB | |
32 | HL_4V90_033 | 4V90 | 0.3452 | 0 | tRNA anticodon loop | AV | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
33 | HL_6UFG_007 | 6UFG | 0.1430 | 0 | tRNA anticodon loop | B | tRNA | G | 32 | C | 33 | U | 34 | G | 35 | A | 36 | U | 37 | A | 38 | A | 39 | C | 40 | cWW | ncWW | |
34 | HL_6NWY_034 | 6NWY | 0.2571 | 0 | tRNA anticodon loop | QV | tRNA | G | 31 | U | 32 | U | 33 | C | 34 | G | 35 | G | 36 | 1MG | 37 | A | 38 | C | 39 | cWW | ||
35 | HL_4V9K_034 | 4V9K | 0.2852 | 0 | tRNA anticodon loop | AW | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | |
36 | HL_2AKE_002 | 2AKE | 0.3010 | 0 | tRNA anticodon loop | B | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | C | 35 | A | 36 | G | 37 | A | 38 | U | 39 | cWW | ||
37 | HL_1J1U_002 | 1J1U | 0.3464 | 0 | tRNA anticodon loop | B | tRNA(Tyr) | A | 532 | C | 533 | U | 534 | G | 535 | U | 536 | A | 537 | G | 538 | A | 539 | U | 540 | cWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AUUGAAAAU | 5 |
GCUCAUAAC | 4 |
GUUCGGAC | 2 |
GUCAUAAC | 2 |
GUUCACGUC | 2 |
GCUGAUAAC | 2 |
ACUCCAGAU | 2 |
AUUAGGUAGU | 1 |
CUUGCCAAG | 1 |
CGUCGUCGG | 1 |
CCUGGAAAG | 1 |
ACUGAAAAU | 1 |
CCUGAAAAG | 1 |
CUUGGCAAG | 1 |
CUUGGUAG | 1 |
CUUGAGGUG | 1 |
UCUCGAAAA | 1 |
CCUUACAAG | 1 |
CUUCCCAAG | 1 |
CUACAAG | 1 |
ACU(QUO)UA(MIA)A(PSU) | 1 |
AUUGAA(YG)AU | 1 |
CCUGUCACG | 1 |
ACUCAUAAU | 1 |
ACUGUAGAU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUGAAAA | 5 |
CUCAUAA | 5 |
CUGAAAA | 2 |
UUCGG(1MG)A | 2 |
UUCACGU | 2 |
CUGAUAA | 2 |
CUCCAGA | 2 |
UUAGGUAG | 1 |
UUGCCAA | 1 |
GUCGUCG | 1 |
CUGGAAA | 1 |
UUGGCAA | 1 |
UUGGU(AET)A | 1 |
UUGAGGU | 1 |
CUCGAAA | 1 |
CUUACAA | 1 |
UUCCCAA | 1 |
(OMC)U(OMU)ACAA | 1 |
CU(QUO)UA(MIA)A | 1 |
(5MC)UCAUAA | 1 |
(OMC)UCAUAA | 1 |
UUGAA(YG)A | 1 |
CUGUCAC | 1 |
CUGUAGA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA anticodon loop (32)
- Anticodon loop related (5)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.27 | Max 0.91
Coloring options: