#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8 91-92-83-6
1 HL_3MJA_0013MJA0.36911Anticodon loop relatedBDomain 3 of the cricket paralysis virus intergenic region IRES RNAA6184U6185U6186G6188G6189U6190A6191G6192U6193cWW
2 HL_4MGN_0034MGN0.33880Anticodon loop relatedBtRNA-glycineC30U31U32G33C34C35A36A37G38cWW
3 HL_4R4V_0014R4V0.21010Anticodon loop relatedAVS ribozyme RNAC626G627U628C629G630U631C632G633G634cWWtSH
4 HL_1N33_0361N330.19620tRNA anticodon loopYANTICODON STEM-LOOP OF SER TRANSFER RNAC31C32U33G34G35A36A37A38G39cWW
5 HL_3TUP_0023TUP0.21560tRNA anticodon loopT tRNAA31C32U33G34A35A36A37A38U39cWW
6 HL_7K98_0027K980.25440tRNA anticodon loopC tRNAC32C33U34G35A36A37A38A39G40cWWntSH
7 HL_4YCO_0024YCO0.16580tRNA anticodon loopD tRNAA31U32U33G34A35A36A37A38U39cWW
8 HL_6CAP_0356CAP0.15170tRNA anticodon loopWRNA (15-mer)A31U32U33G34A35A36A37A38U39cWW
9 HL_6ORD_0366ORD0.17150tRNA anticodon loopQY tRNAC31U32U33G34G35C36A37A38G39cWW
10 HL_6GSK_2036GSK0.17870tRNA anticodon loop1K tRNAC31U32U33G34G35U36AET37A38G39cWW
11 HL_4V87_1074V870.16660tRNA anticodon loopBBTRNA-LEUC32U33U34G35A36G37G38U39G40cWW
12 HL_4V9I_0394V9I0.16910tRNA anticodon loopAY tRNAU31C32U33C34G35A36A37A38A39cWW
13 HL_5IBB_2105IBB0.14370tRNA anticodon loop1L tRNAC31C32U33U34A35C36A37A38G39cWWncWW
14 HL_4B3R_0344B3R0.12150tRNA anticodon loopZRNA (15-mer)A31U32U33G34A35A36A37A38U39cWW
15 HL_7U2I_1047U2I0.00000tRNA anticodon loop1w tRNAC31U32U33C34C35C36A37A38G39cWW
16 HL_7VNV_0027VNV0.14440tRNA anticodon loopA tRNAC31OMC32U33OMU34A35C36A37A38G39cWWntSHa
17 HL_6NTA_1386NTA0.19390tRNA anticodon loopXVP-site ASLProG31U32U33C34G35G361MG37A38C39cWW
18 HL_4WZD_2384WZD0.15060tRNA anticodon loop2K tRNAA32||||P_1C33||||P_1U34||||P_1QUO35||||P_1U36||||P_1A37||||P_1MIA38||||P_1A39||||P_1PSU40||||P_1cWW
19 HL_4TUE_0344TUE0.15720tRNA anticodon loopQV tRNAG31C32U33C34A35U36A37A38C39cWW
20 HL_6CFJ_1076CFJ0.13960tRNA anticodon loop1x tRNAG315MC32U33C34A35U36A37A38C39cWW
21 HL_5E81_2125E810.16540tRNA anticodon loop2K tRNAG32OMC33U34C35A36U37A38A39C40cWW
22 HL_4V9Q_2144V9Q0.18420tRNA anticodon loopDV tRNAG31C32U33C34A35U36A37A38C39cWW
23 HL_4V50_1374V500.18470tRNA anticodon loopCWPHE TRNA (UNMODIFIED BASES)G31C32U33C34A35U36A37A38C39cWWncWW
24 HL_4WT8_2164WT80.18920tRNA anticodon loopD4 tRNAG32C33U34C35A36U37A38A39C40cWW
25 HL_4V5A_1384V5A0.24010tRNA anticodon loopCVP-SITE RNA ASL-PHEA30U31U32G33A34A35A36A37U38cWW
26 HL_7OSM_1167OSM0.22060tRNA anticodon loopASIT tRNAA31U32U33G34A35A36YG37A38U39ncWW
27 HL_7QR4_0017QR40.21080Anticodon loop relatedBRNA CPEB3 ribozymeG19U20U21C22A23C24G25U26C27cWW
28 HL_7QR3_0017QR30.19570Anticodon loop relatedCchimpanzee CPEB3 ribozymeG19U20U21C22A23C24G25U26C27cWWntSHa
29 HL_6UFM_0026UFM0.16340tRNA anticodon loopA tRNAG32C33U34G35A36U37A38A39C40cWW
30 HL_2AZX_0052AZX0.17430tRNA anticodon loopD72-MERA531C532U533C534C535A536G537A538U539cWW
31 HL_6UGG_0056UGG0.22190tRNA anticodon loopB tRNAC31C32U33G34U35C36A37C38G39cWWncWB
32 HL_4V90_0334V900.34520tRNA anticodon loopAV tRNAA31U32U33G34A35A36A37A38U39cWW
33 HL_6UFG_0076UFG0.14300tRNA anticodon loopB tRNAG32C33U34G35A36U37A38A39C40cWWncWW
34 HL_6NWY_0346NWY0.25710tRNA anticodon loopQV tRNAG31U32U33C34G35G361MG37A38C39cWW
35 HL_4V9K_0344V9K0.28520tRNA anticodon loopAW tRNAA31C32U33C34A35U36A37A38U39cWWncWW
36 HL_2AKE_0022AKE0.30100tRNA anticodon loopB tRNAA31C32U33C34C35A36G37A38U39cWW
37 HL_1J1U_0021J1U0.34640tRNA anticodon loopBtRNA(Tyr)A532C533U534G535U536A537G538A539U540cWWncWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUUGAAAAU5
GCUCAUAAC4
GUUCGGAC2
GUCAUAAC2
GUUCACGUC2
GCUGAUAAC2
ACUCCAGAU2
AUUAGGUAGU1
CUUGCCAAG1
CGUCGUCGG1
CCUGGAAAG1
ACUGAAAAU1
CCUGAAAAG1
CUUGGCAAG1
CUUGGUAG1
CUUGAGGUG1
UCUCGAAAA1
CCUUACAAG1
CUUCCCAAG1
CUACAAG1
ACU(QUO)UA(MIA)A(PSU)1
AUUGAA(YG)AU1
CCUGUCACG1
ACUCAUAAU1
ACUGUAGAU1
Non-Watson-Crick part of the motif
SequenceCounts
UUGAAAA5
CUCAUAA5
CUGAAAA2
UUCGG(1MG)A2
UUCACGU2
CUGAUAA2
CUCCAGA2
UUAGGUAG1
UUGCCAA1
GUCGUCG1
CUGGAAA1
UUGGCAA1
UUGGU(AET)A1
UUGAGGU1
CUCGAAA1
CUUACAA1
UUCCCAA1
(OMC)U(OMU)ACAA1
CU(QUO)UA(MIA)A1
(5MC)UCAUAA1
(OMC)UCAUAA1
UUGAA(YG)A1
CUGUCAC1
CUGUAGA1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA anticodon loop (32)
  • Anticodon loop related (5)
  • Basepair signature
    cWW-F-F-F-F-F-F-F
    Heat map statistics
    Min 0.08 | Avg 0.27 | Max 0.91
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