HL_36427.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9	1-9	2-8	3-6
1	HL_3MJA_001	3MJA	0.3691	1	Anticodon loop related	B	Domain 3 of the cricket paralysis virus intergenic region IRES RNA	A	6184	U	6185	U	6186	G	6188	G	6189	U	6190	A	6191	G	6192	U	6193	cWW
2	HL_4MGN_003	4MGN	0.3388	0	tRNA anticodon loop	B	tRNA	C	30	U	31	U	32	G	33	C	34	C	35	A	36	A	37	G	38	cWW
3	HL_4R4V_001	4R4V	0.2101	0	Anticodon loop related	A	VS ribozyme RNA	C	626	G	627	U	628	C	629	G	630	U	631	C	632	G	633	G	634	cWW	tSH
4	HL_1N33_036	1N33	0.1962	0	tRNA anticodon loop	Y	ANTICODON STEM-LOOP OF SER TRANSFER RNA	C	31	C	32	U	33	G	34	G	35	A	36	A	37	A	38	G	39	cWW
5	HL_3TUP_002	3TUP	0.2156	0	tRNA anticodon loop	T	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
6	HL_7K98_002	7K98	0.2544	0	tRNA anticodon loop	C	tRNA	C	32	C	33	U	34	G	35	A	36	A	37	A	38	A	39	G	40	cWW	ntSH
7	HL_4YCO_002	4YCO	0.1658	0	tRNA anticodon loop	D	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
8	HL_6CAP_035	6CAP	0.1517	0	tRNA anticodon loop	W	RNA (15-mer)	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
9	HL_6ORD_036	6ORD	0.1715	0	tRNA anticodon loop	QY	tRNA	C	31	U	32	U	33	G	34	G	35	C	36	A	37	A	38	G	39	cWW
10	HL_6GSK_203	6GSK	0.1787	0	tRNA anticodon loop	1K	tRNA	C	31	U	32	U	33	G	34	G	35	U	36	AET	37	A	38	G	39	cWW
11	HL_4V87_107	4V87	0.1666	0	tRNA anticodon loop	BB	tRNA	C	32	U	33	U	34	G	35	A	36	G	37	G	38	U	39	G	40	cWW
12	HL_4V9I_039	4V9I	0.1691	0	tRNA anticodon loop	AY	A-SITE tRNA	U	31	C	32	U	33	C	34	G	35	A	36	A	37	A	38	A	39	cWW
13	HL_5IBB_210	5IBB	0.1437	0	tRNA anticodon loop	1L	tRNA	C	31	C	32	U	33	U	34	A	35	C	36	A	37	A	38	G	39	cWW	ncWW
14	HL_4B3R_034	4B3R	0.1215	0	tRNA anticodon loop	Z	RNA (15-mer)	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
15	HL_7U2I_104	7U2I	0.0000	0	tRNA anticodon loop	1w	tRNA	C	31	U	32	U	33	C	34	C	35	C	36	A	37	A	38	G	39	cWW
16	HL_7VNV_002	7VNV	0.1444	0	tRNA anticodon loop	A	tRNA	C	31	OMC	32	U	33	OMU	34	A	35	C	36	A	37	A	38	G	39	cWW		ntSHa
17	HL_6NTA_138	6NTA	0.1939	0	tRNA anticodon loop	XV	P-site ASLPro	G	31	U	32	U	33	C	34	G	35	G	36	1MG	37	A	38	C	39	cWW
18	HL_4WZD_238	4WZD	0.1506	0	tRNA anticodon loop	2K	tRNA	A	32\|\|\|\|P_1	C	33\|\|\|\|P_1	U	34\|\|\|\|P_1	QUO	35\|\|\|\|P_1	U	36\|\|\|\|P_1	A	37\|\|\|\|P_1	MIA	38\|\|\|\|P_1	A	39\|\|\|\|P_1	PSU	40\|\|\|\|P_1	cWW
19	HL_4TUE_034	4TUE	0.1572	0	tRNA anticodon loop	QV	tRNA	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
20	HL_6CFJ_107	6CFJ	0.1396	0	tRNA anticodon loop	1x	tRNA	G	31	5MC	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
21	HL_5E81_212	5E81	0.1654	0	tRNA anticodon loop	2K	tRNA	G	32	OMC	33	U	34	C	35	A	36	U	37	A	38	A	39	C	40	cWW
22	HL_4V9Q_214	4V9Q	0.1842	0	tRNA anticodon loop	DV	tRNA	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
23	HL_4V50_137	4V50	0.1847	0	tRNA anticodon loop	CW	PHE TRNA (UNMODIFIED BASES)	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW	ncWW
24	HL_4WT8_216	4WT8	0.1892	0	tRNA anticodon loop	D4	tRNA	G	32	C	33	U	34	C	35	A	36	U	37	A	38	A	39	C	40	cWW
25	HL_4V5A_138	4V5A	0.2401	0	tRNA anticodon loop	CV	tRNA	A	30	U	31	U	32	G	33	A	34	A	35	A	36	A	37	U	38	cWW
26	HL_7OSM_116	7OSM	0.2206	0	tRNA anticodon loop	ASIT	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	YG	37	A	38	U	39	ncWW
27	HL_7QR4_001	7QR4	0.2108	0	Anticodon loop related	B	Mammalian CPEB3 ribozyme	G	19	U	20	U	21	C	22	A	23	C	24	G	25	U	26	C	27	cWW
28	HL_7QR3_001	7QR3	0.1957	0	Anticodon loop related	C	Mammalian CPEB3 ribozyme	G	19	U	20	U	21	C	22	A	23	C	24	G	25	U	26	C	27	cWW		ntSHa
29	HL_6UFM_002	6UFM	0.1634	0	tRNA anticodon loop	A	tRNA	G	32	C	33	U	34	G	35	A	36	U	37	A	38	A	39	C	40	cWW
30	HL_2AZX_005	2AZX	0.1743	0	tRNA anticodon loop	D	tRNA	A	531	C	532	U	533	C	534	C	535	A	536	G	537	A	538	U	539	cWW
31	HL_6UGG_005	6UGG	0.2219	0	tRNA anticodon loop	B	tRNA	C	31	C	32	U	33	G	34	U	35	C	36	A	37	C	38	G	39	cWW	ncWB
32	HL_4V90_033	4V90	0.3452	0	tRNA anticodon loop	AV	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
33	HL_6UFG_007	6UFG	0.1430	0	tRNA anticodon loop	B	tRNA	G	32	C	33	U	34	G	35	A	36	U	37	A	38	A	39	C	40	cWW	ncWW
34	HL_6NWY_034	6NWY	0.2571	0	tRNA anticodon loop	QV	tRNA	G	31	U	32	U	33	C	34	G	35	G	36	1MG	37	A	38	C	39	cWW
35	HL_4V9K_034	4V9K	0.2852	0	tRNA anticodon loop	AW	tRNA	A	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	U	39	cWW	ncWW
36	HL_2AKE_002	2AKE	0.3010	0	tRNA anticodon loop	B	tRNA	A	31	C	32	U	33	C	34	C	35	A	36	G	37	A	38	U	39	cWW
37	HL_1J1U_002	1J1U	0.3464	0	tRNA anticodon loop	B	tRNA	A	532	C	533	U	534	G	535	U	536	A	537	G	538	A	539	U	540	cWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUUGAAAAU	5
GCUCAUAAC	4
GUUCGGAC	2
GUCAUAAC	2
GUUCACGUC	2
GCUGAUAAC	2
ACUCCAGAU	2
AUUAGGUAGU	1
CUUGCCAAG	1
CGUCGUCGG	1
CCUGGAAAG	1
ACUGAAAAU	1
CCUGAAAAG	1
CUUGGCAAG	1
CUUGGUAG	1
CUUGAGGUG	1
UCUCGAAAA	1
CCUUACAAG	1
CUUCCCAAG	1
CUACAAG	1
ACU(QUO)UA(MIA)A(PSU)	1
AUUGAA(YG)AU	1
CCUGUCACG	1
ACUCAUAAU	1
ACUGUAGAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUGAAAA	5
CUCAUAA	5
CUGAAAA	2
UUCGG(1MG)A	2
UUCACGU	2
CUGAUAA	2
CUCCAGA	2
UUAGGUAG	1
UUGCCAA	1
GUCGUCG	1
CUGGAAA	1
UUGGCAA	1
UUGGU(AET)A	1
UUGAGGU	1
CUCGAAA	1
CUUACAA	1
UUCCCAA	1
(OMC)U(OMU)ACAA	1
CU(QUO)UA(MIA)A	1
(5MC)UCAUAA	1
(OMC)UCAUAA	1
UUGAA(YG)A	1
CUGUCAC	1
CUGUAGA	1

Release history

Release	3.88
Date	2024-09-11
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_36427.1 Version HL_36427.1 of this group appears in releases 3.88 to 3.88 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_36427.1 Version HL_36427.1 of this group appears in releases 3.88 to 3.88

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