HL_53597.3

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-7	3-5	3-6
1	HL_7KGA_001	7KGA	0.5063	2		A	Flavivirus DB element	U	22	C	23	A	24	C	27	C	28	U	29	A	30	G	31	cWW	ncWW
2	HL_3MJA_001	3MJA	0.3939	2		B	Domain 3 of the cricket paralysis virus intergenic region IRES RNA	A	6184	U	6185	U	6186	G	6189	U	6190	A	6191	G	6192	U	6193	cWW
3	HL_4V83_139	4V83	0.4504	2		CV	domain 3 of PSIC IGR IRES RNA	A	6160	U	6161	U	6162	G	6165	U	6166	G	6167	G	6168	U	6169	cWW	ncWW
4	HL_3WFS_002	3WFS	0.3233	1	tRNA anticodon loop	A	tRNA	A	31	C	32	U	33	A	35	A	36	A	37	A	38	U	39	ncWW	ncWW
5	HL_4V9K_034	4V9K	0.2758	1	tRNA anticodon loop	AW	tRNA	A	31	C	32	U	33	A	35	U	36	A	37	A	38	U	39	cWW	ncWW
6	HL_7QR4_001	7QR4	0.2565	1		B	RNA CPEB3 ribozyme	G	19	U	20	U	21	A	23	C	24	G	25	U	26	C	27	cWW
7	HL_7QR3_001	7QR3	0.2372	1		C	chimpanzee CPEB3 ribozyme	G	19	U	20	U	21	A	23	C	24	G	25	U	26	C	27	cWW		ntSHa
8	HL_4TUE_034	4TUE	0.1591	1	tRNA anticodon loop	QV	tRNA	G	31	C	32	U	33	A	35	U	36	A	37	A	38	C	39	cWW
9	HL_4V9Q_214	4V9Q	0.2046	1	tRNA anticodon loop	DV	tRNA	G	31	C	32	U	33	A	35	U	36	A	37	A	38	C	39	cWW
10	HL_4V50_137	4V50	0.1983	1	tRNA anticodon loop	CW	PHE TRNA (UNMODIFIED BASES)	G	31	C	32	U	33	A	35	U	36	A	37	A	38	C	39	cWW	ncWW
11	HL_4WT8_216	4WT8	0.2056	1	tRNA anticodon loop	D4	tRNA	G	32	C	33	U	34	A	36	U	37	A	38	A	39	C	40	cWW
12	HL_4V5A_138	4V5A	0.2239	1		CV	P-SITE RNA ASL-PHE	A	30	U	31	U	32	A	34	A	35	A	36	A	37	U	38	cWW
13	HL_6UFM_002	6UFM	0.1398	1	tRNA anticodon loop	A	tRNA	G	32	C	33	U	34	A	36	U	37	A	38	A	39	C	40	cWW
14	HL_2AZX_005	2AZX	0.0000	1	tRNA anticodon loop	D	72-MER	A	531	C	532	U	533	C	535	A	536	G	537	A	538	U	539	cWW
15	HL_4V90_033	4V90	0.2073	1	tRNA anticodon loop	AV	tRNA	A	31	U	32	U	33	A	35	A	36	A	37	A	38	U	39	cWW
16	HL_6UFG_007	6UFG	0.1902	1	tRNA anticodon loop	B	tRNA	G	32	C	33	U	34	A	36	U	37	A	38	A	39	C	40	cWW	ncWW
17	HL_7U2I_104	7U2I	0.1743	1		1w	tRNA	C	31	U	32	U	33	C	35	C	36	A	37	A	38	G	39	cWW
18	HL_6ORD_036	6ORD	0.2388	1	tRNA anticodon loop	QY	tRNA	C	31	U	32	U	33	G	35	C	36	A	37	A	38	G	39	cWW
19	HL_4V9I_039	4V9I	0.2670	1	tRNA anticodon loop	AY	tRNA	U	31	C	32	U	33	G	35	A	36	A	37	A	38	A	39	cWW
20	HL_5IBB_210	5IBB	0.2414	1	tRNA anticodon loop	1L	tRNA	C	31	C	32	U	33	A	35	C	36	A	37	A	38	G	39	cWW	ncWW
21	HL_4V87_107	4V87	0.2745	1		BB	TRNA-LEU	C	32	U	33	U	34	A	36	G	37	G	38	U	39	G	40	cWW
22	HL_3TUP_002	3TUP	0.3045	1	tRNA anticodon loop	T	tRNA	A	31	C	32	U	33	A	35	A	36	A	37	A	38	U	39	cWW
23	HL_4R4V_001	4R4V	0.2701	1	Varkud satellite (VS) ribozyme helix 1	A	VS ribozyme RNA	C	626	G	627	U	628	G	630	U	631	C	632	G	633	G	634	cWW	tSH
24	HL_7K98_002	7K98	0.3076	1		C	tRNA	C	32	C	33	U	34	A	36	A	37	A	38	A	39	G	40	cWW	ntSH
25	HL_4YCO_002	4YCO	0.2352	1	tRNA anticodon loop	D	tRNA	A	31	U	32	U	33	A	35	A	36	A	37	A	38	U	39	cWW
26	HL_1U0B_002	1U0B	0.2162	1	tRNA anticodon loop	A	tRNA	A	31	U	32	U	33	C	35	A	36	A	37	A	38	U	39	cWW
27	HL_5T83_002	5T83	0.2108	1	Guanidine riboswitch aptamer P2 hairpin	A	Guanidine-I riboswitch	U	56	U	57	U	58	A	60	C	61	A	62	A	63	A	64	cWW		ntSHa
28	HL_1J1U_002	1J1U	0.2528	1	tRNA anticodon loop	B	tRNA(Tyr)	A	532	C	533	U	534	U	536	A	537	G	538	A	539	U	540	cWW	ncWW
29	HL_2AKE_002	2AKE	0.2389	1	tRNA anticodon loop	B	tRNA	A	31	C	32	U	33	C	35	A	36	G	37	A	38	U	39	cWW
30	HL_3W3S_002	3W3S	0.3831	1	tRNA anticodon loop	B	Selenocysteine transfer RNA	A	31	C	32	U	33	C	35	A	36	A	37	A	38	U	39	cWW	ncWW
31	HL_7PMQ_003	7PMQ	0.4622	0		F	RNA (42-MER)	G	8	U	9	U	10	U	11	C	12	G	13	A	14	C	15	cWW
32	HL_8C3A_218	8C3A	0.4638	2		CM	SSU rRNA	A	1223	U	1224	U	1225	G	1226	A	1227	A	1229	C	1231	U	1232	cWW			ntsS
33	HL_4V88_213	4V88	0.6551	2		A6	SSU rRNA	A	1238	U	1239	U	1240	G	1241	A	1242	A	1244	C	1246	U	1247	cWW	ntSW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCUCAUAAC	4
AUUGAAAAU	3
ACUGAAAAU	2
GUUCACGUC	2
GCUGAUAAC	2
ACUCCAGAU	2
AUUGAGAGCU	2
UCAAGCCUAG	1
AUUAGGUAGU	1
AUUAAGUGGU	1
ACUCAUAAU	1
CUUCCCAAG	1
CUUGGCAAG	1
UCUCGAAAA	1
CCUUACAAG	1
CUUGAGGUG	1
CGUCGUCGG	1
CCUGAAAAG	1
AUUGCAAAU	1
UUUCACAAA	1
ACUGUAGAU	1
ACUUCAAAU	1
GUUUCGAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUCAUAA	5
CUGAAAA	3
UUGAAAA	3
UUCACGU	2
CUGAUAA	2
CUCCAGA	2
UUGAGAGC	2
CAAGCCUA	1
UUAGGUAG	1
UUAAGUGG	1
UUCCCAA	1
UUGGCAA	1
CUCGAAA	1
CUUACAA	1
UUGAGGU	1
GUCGUCG	1
UUGCAAA	1
UUCACAA	1
CUGUAGA	1
CUUCAAA	1
UUUCGA	1

Release history

Release	3.84
Date	2024-05-22
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_53597.3 Version HL_53597.3 of this group appears in releases 3.84 to 3.84 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_53597.3 Version HL_53597.3 of this group appears in releases 3.84 to 3.84

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Csv

Json