RNA 3D Hub //

Motif IL_01312.8 Version IL_01312.8 of this group appears in releases 3.46 to 3.46

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-32-52-63-43-5
1 IL_4Y4O_2024Y4O0.850612A LSU rRNAC844G845C846*G931A933G934cWWcWW
2 IL_4J50_0074J500.60610Isolated cWH basepairB+ARNA (19-mer)C13||||3_555A14||||3_555G15||||3_555*C7||||3_555A8||||3_555G9||||3_555cWWcWW
3 IL_4J50_0044J500.60610Isolated cWH basepairB+ARNA (19-mer)C13||||2_555A14||||2_555G15||||2_555*C7||||2_555A8||||2_555G9||||2_555cWWcWW
4 IL_4J50_0014J500.60610Isolated cWH basepairB+ARNA (19-mer)C13A14G15*C7A8G9cWWcWW
5 IL_4J50_0064J500.60590Isolated cWH basepairA+BRNA (19-mer)C13||||2_555A14||||2_555G15||||2_555*C7||||2_555A8||||2_555G9||||2_555cWWcWW
6 IL_4J50_0094J500.60590Isolated cWH basepairA+BRNA (19-mer)C13||||3_555A14||||3_555G15||||3_555*C7||||3_555A8||||3_555G9||||3_555cWWcWW
7 IL_4J50_0034J500.60590Isolated cWH basepairA+BRNA (19-mer)C13A14G15*C7A8G9cWWcWW
8 IL_1M5K_0041M5K0.56160Isolated cWH basepairBRNA HAIRPIN RIBOZYMEG72G73G74*C79U80U81ncWWcWW
9 IL_3FOZ_0013FOZ0.58920Isolated cWH basepairDtRNA(Phe)G63A64G65*C49U50U51cWWcWW
10 IL_2H1M_0022H1M0.57640Isolated cWH basepairA+BRNA (16-mer)A5G6U7*A26A27U28cWWncHWcWW
11 IL_2H1M_0032H1M0.58530Isolated cWH basepairB+ARNA (16-mer)A21G22U23*A10A11U12cWWncHWcWW
12 IL_4WZM_0014WZM0.58560Isolated cWH basepairB+CRNA template + RNA primerG906G907C908*G917C918C919cWWncHWcWW
13 IL_2ET8_0032ET80.61411Decoding loop relatedA+BRNA (22-mer)G15A17G18*C29A30C31cWWcWW
14 IL_4PKD_0014PKD0.58451Isolated non-canonical cWW with bulgesVU1 snRNA stem-loops 1 and 2 (55-MER)G106U107U108*A86U87C89cWWcWwcWW
15 IL_4V88_4484V880.58300A6 SSU rRNAA1234C1235A1236*U1249U1250U1251cWWcWW
16 IL_3MOJ_0023MOJ0.53760A LSU rRNAA2513U2514C2515*G2569G2570U2571ncWWncWWacWW
17 IL_4IOA_0544IOA0.57321X LSU rRNAG1573A1574G1576*U1447A1448C1449cWWncWwcWW
18 IL_4V88_4754V880.42040A6 SSU rRNAG1715C1716G1717*U1684G1685C1686cWWncWWcWW
19 IL_4V88_4574V880.55022Isolated non-canonical cWW pairA6 SSU rRNAG1352U1353G1354*U1369U1372C1373cWWcwWcWW
20 IL_1WNE_0011WNE0.58160C+BRNA (5-mer)G917C918C919*G906G907C908cWWcWW
21 IL_5UNE_0065UNE0.41860Isolated non-canonical cWW pairA+BRNA (47-MER)C27A28G29*U16A17G18cWWcwWcWW
22 IL_5VSU_0025VSU0.41730I U6 snRNAC66C67C68*G78A79G81cWWcWWacWW
23 IL_4IOA_0444IOA0.38190Isolated non-canonical cWW pair (H)X LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
24 IL_4V88_4704V880.34620Isolated non-canonical cWW pairA6 SSU rRNAU1665U1666A1667*U1734U1735G1736cWWcWW
25 IL_3GLP_0013GLP0.28530A+BRNA (8-mer)C2U3G4*C5||AU6G7cWWcWW
26 IL_4IOA_1094IOA0.37160Isolated non-canonical cWW pair (H)Y 5S rRNAU82C83G84*C97C98G99cWWcBWcWW
27 IL_4WF9_0184WF90.39340Isolated non-canonical cWW pairX LSU rRNAU705U706G707*U638U639G640cWWcWW
28 IL_4KYY_0024KYY0.39920Isolated non-canonical cWW pairB+ARNA 17-merU8U9G10*U8U9G10cWWcWW
29 IL_5M0H_0025M0H0.38422Multiple bulged bases, near cWWAASH1 E3 (42 nt-TL/TLR)G8U11C12*G34A35C36ncWWcWWcWW
30 IL_4V88_4554V880.33591Isolated non-canonical cWW pairA6 SSU rRNAC1339A1341C1342*G1383A1384G1385cWWncwWcWW
31 IL_5J7L_0085J7L0.32641Single bulged G, near cWWAA SSU rRNAU92U93C95*G75G76A77cWWncWWancWW
32 IL_3TD0_0053TD00.35451Isolated non-canonical cWW pairA+BRNA (23-mer)G16A17G19*C30G31C32cWWcWWcWW
33 IL_3TD0_0023TD00.36431Isolated non-canonical cWW pairB+ARNA (23-mer)G39A40G42*C7G8C9cWWcWWcWW
34 IL_1XJR_0031XJR0.32741Isolated non-canonical cWW pairAs2m RNAG32G34G35*C16A17C18cWWcWWcWW
35 IL_6CZR_1226CZR0.35540Isolated non-canonical cWW pair1a SSU rRNAG196U197G198*C181C182C183cWWcWWncWW
36 IL_1MFQ_0031MFQ0.44290Isolated non-canonical cWW pairA SRP RNAA163G164G165*U132A133U134cWWncWWcWW
37 IL_4ZC7_0024ZC70.45630B+ARNA duplexA39A40G42*C7G8U9cWWncWWcWW
38 IL_4WF9_0554WF90.29200X LSU rRNAG1465G1466G1467*C1622U1623C1624cWWcWW
39 IL_4M4O_0014M4O0.27750Isolated non-canonical cWW pairBRNA (59-MER)A52C53G54*C6A7U8cWWcWWacWW
40 IL_4P3U_0014P3U0.28320Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcWW
41 IL_1RPU_0011RPU0.26420Isolated non-canonical cWW pairD+CRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncBWcWW
42 IL_3GLP_0023GLP0.22830A+BRNA (8-mer)C5U6G7*C2||AU3||AG4ncWwcWW
43 IL_4E48_0034E480.21630Isolated non-canonical cWW pairB+ARNA (20-mer)C31U32G33*C8U9G10cWWcWW
44 IL_5MWI_0065MWI0.23630Isolated non-canonical cWW pairARNA G(CUG)8C duplexC8||||4_555U9||||4_555G10||||4_555*C17U18G19cWWcWW
45 IL_5MWI_0035MWI0.23630Isolated non-canonical cWW pairARNA G(CUG)8C duplexC8U9G10*C17||||4_555U18||||4_555G19||||4_555cWWcWW
46 IL_4E48_0054E480.24980Isolated non-canonical cWW pairB+ARNA (20-mer)C25U26G27*C14U15G16cWWcWW
47 IL_4E59_0034E590.15460A+BRNA duplex containing CCG repeatsC2||||3_555C3||||3_555G4||||3_555*C2||||3_555C3||||3_555G4||||3_555cWWncBWcWW
48 IL_4E59_0024E590.15460A+BRNA duplex containing CCG repeatsC2||||2_555C3||||2_555G4||||2_555*C2||||2_555C3||||2_555G4||||2_555cWWncBWcWW
49 IL_4E59_0014E590.15460Isolated non-canonical cWW pairA+BRNA duplex containing CCG repeatsC2C3G4*C2C3G4cWWncBWcWW
50 IL_3GM7_0023GM70.17110Isolated non-canonical cWW pairH+GRNA (18-mer)C13U14G15*C4U5G6cWWcWW
51 IL_3GM7_0043GM70.17240Isolated non-canonical cWW pairH+GRNA (18-mer)C7U8G9*C10U11G12cWWncWwcWW
52 IL_3SZX_0013SZX0.17050Isolated non-canonical cWW pairB+ARNA (19-mer)C13U14G15*C7U8G9cWWcWW
53 IL_4E48_0014E480.19600Isolated non-canonical cWW pairB+ARNA (20-mer)C37U38G39*C2U3G4cWWcWW
54 IL_4E48_0024E480.19980Isolated non-canonical cWW pairA+BRNA (20-mer)C5U6G7*C34U35G36cWWcWW
55 IL_4E48_0044E480.18710Isolated non-canonical cWW pairA+BRNA (20-mer)C11U12G13*C28U29G30cWWncWwcWW
56 IL_1UN6_0051UN60.16090Isolated non-canonical cWW pairF5S RIBOSOMAL RNAC95U96G97*C79U80G81cWWncWwcWW
57 IL_3GM7_0033GM70.14110Isolated non-canonical cWW pairG+HRNA (18-mer)C7U8G9*C10U11G12cWWncWwcWW
58 IL_4E48_0064E480.08730Isolated non-canonical cWW pairA+BRNA (20-mer)C17U18G19*C22U23G24cWWncWwcWW
59 IL_4KNQ_0024KNQ0.00000Isolated non-canonical cWW pairBRNA (20-mer)C213||||4_555C214||||4_555G215||||4_555*C207C208G209cWWcWW
60 IL_4KNQ_0044KNQ0.00000Isolated non-canonical cWW pairBRNA (20-mer)C213C214G215*C207||||4_555C208||||4_555G209||||4_555cWWcWW
61 IL_4JGN_0044JGN0.09590Isolated non-canonical cWW pairERNA (20-mer)C514U515G516*C508||||4_555U509||||4_555G510||||4_555cWWncWwcWW
62 IL_4JGN_0024JGN0.09590Isolated non-canonical cWW pairERNA (20-mer)C514||||4_555U515||||4_555G516||||4_555*C508U509G510cWWncWwcWW
63 IL_3SZX_0023SZX0.13000Isolated non-canonical cWW pairA+BRNA (19-mer)C10U11G12*C10U11G12cWWncWwcWW
64 IL_4WF9_0834WF90.17480Isolated non-canonical cWW pairX LSU rRNAC2111C2112U2113*A2260A2261G2262cWWncWWacWW
65 IL_4Y4O_1944Y4O0.178502A LSU rRNAC806U807G808*C672C673G674cWWcWWcWW
66 IL_5J7L_2595J7L0.16510Isolated non-canonical cWW pairDA LSU rRNAC806U807G808*C672C673G674cWWcWWcWW
67 IL_4IOA_0134IOA0.18890X LSU rRNAC819U820A821*U685C686G687cWWcWWcWW
68 IL_4WF9_0204WF90.17670Isolated non-canonical cWW pairX LSU rRNAC851U852G853*C717C718G719cWWcWWcWW
69 IL_5TBW_0275TBW0.23630Isolated non-canonical cWW pair1 LSU rRNAC938U939G940*C803C804G805cWWcWWcWW
70 IL_4V9F_0234V9F0.27620Isolated non-canonical cWW pair0 LSU rRNAC899U900G901*C763C764G765cWWcWWcWW
71 IL_5TBW_0085TBW0.29990Isolated non-canonical cWW pair1 LSU rRNAC125U126G127*C141C142G143cWWcWWcWW
72 IL_3RW6_0043RW60.26650Isolated non-canonical cWW pairHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC33U34G35*C24C25G26cWWcWWcWW
73 IL_5UNE_0095UNE0.19360Isolated non-canonical cWW contactA+BRNA (47-MER)U39G40G41*U7G8A9cWWncWW
74 IL_4IOA_0304IOA0.22850Isolated non-canonical cWW pairX LSU rRNAG963A964G965*U974C975C976cWWcWWcWW
75 IL_4Y4O_2114Y4O0.20840Isolated non-canonical cWW pair2A LSU rRNAG952A953G954*U963C964C965cWWcWWcWW
76 IL_5UNE_0015UNE0.22350Isolated non-canonical cWW contactB+ARNA (47-MER)U39G40G41*U7G8A9cWWncWwcWW
77 IL_4LFB_0064LFB0.27190Isolated non-canonical cWW pairA SSU rRNAC99A101G102*C67G68G69cWWcWWcWW
78 IL_2ZKO_0012ZKO0.24750Isolated non-canonical cWW pairD+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
79 IL_3GM7_0053GM70.26970Isolated non-canonical cWW pairG+HRNA (18-mer)C13U14G15*C4U5G6cWWcWW
80 IL_5MWI_0045MWI0.29120Isolated non-canonical cWW pairARNA G(CUG)8C duplexC14||||4_555U15||A||4_555G16||||4_555*C11U12||AG13cWWcWW
81 IL_5MWI_0055MWI0.29120Isolated non-canonical cWW pairARNA G(CUG)8C duplexC14U15||AG16*C11||||4_555U12||A||4_555G13||||4_555cWWcWW
82 IL_5MWI_0075MWI0.24800Isolated non-canonical cWW pairARNA G(CUG)8C duplexC20U21G22*C5||||4_555U6||||4_555G7||||4_555cWWcWW
83 IL_5MWI_0025MWI0.24800Isolated non-canonical cWW pairARNA G(CUG)8C duplexC20||||4_555U21||||4_555G22||||4_555*C5U6G7cWWcWW
84 IL_5VCI_0025VCI0.20310Isolated non-canonical cWW pairB+ARNA (12-mer)C7U8G9*C4U5G6cWWncwWcWW
85 IL_3GM7_0063GM70.22230Isolated non-canonical cWW pairG+HRNA (18-mer)C16U17G18*C1U2G3cWWncwWcWW
86 IL_4JGN_0054JGN0.22690Isolated non-canonical cWW pairERNA (20-mer)C517U518G519*C505||||4_555U506||||4_555G507||||4_555cWWcwWcWW
87 IL_4JGN_0014JGN0.22690Isolated non-canonical cWW pairERNA (20-mer)C517||||4_555U518||||4_555G519||||4_555*C505U506G507cWWcwWcWW
88 IL_4KNQ_0054KNQ0.20720Isolated non-canonical cWW pairBRNA (20-mer)C216C217G218*C204||||4_555C205||||4_555G206||||4_555cWWcWwcWW
89 IL_4KNQ_0014KNQ0.20720Isolated non-canonical cWW pairBRNA (20-mer)C216||||4_555C217||||4_555G218||||4_555*C204C205G206cWWcWwcWW
90 IL_1ZH5_0011ZH50.20640Isolated non-canonical cWW pairC+DRNA (9-mer)C3U4G5*C3U4G5cWWncwWcWW
91 IL_5AY2_0015AY20.33410Isolated non-canonical cWW pairB+ARNA (12-mer)A8C9U10*A3C4U5cWWcWW
92 IL_5AY2_0035AY20.34170Isolated non-canonical cWW pairA+BRNA (12-mer)A8C9U10*A3C4U5cWWcWW
93 IL_5M73_0045M730.29000Isolated non-canonical cWW pair (H)A SRP RNAG120U121U122*A228U229C230cWWcWwcWW
94 IL_4V88_3984V880.24130Isolated non-canonical cWW pairA6 SSU rRNAA257C258U259*A206U207U208cWWcWWcWW
95 IL_5MWI_0015MWI0.21670Isolated non-canonical cWW pairARNA G(CUG)8C duplexC2U3G4*C23||||4_555U24||||4_555G25||||4_555cWWcWwcWW
96 IL_5MWI_0085MWI0.21670Isolated non-canonical cWW pairARNA G(CUG)8C duplexC2||||4_555U3||||4_555G4||||4_555*C23U24G25cWWcWwcWW
97 IL_6E7L_0036E7L0.19950Isolated non-canonical cWW pairARNA (22-mer)C17U18G19*C4||||7_375U5||||7_375G6||||7_375ncWWcWWcWwcWW
98 IL_6E7L_0016E7L0.19950Isolated non-canonical cWW pairARNA (22-mer)C17||||7_375U18||||7_375G19||||7_375*C4U5G6ncWWcWWcWwcWW
99 IL_4PCJ_0014PCJ0.24930Isolated non-canonical cWW pairAtrCUG-3('5)C1U2G3*C33U34G35cWWcWwcWW
100 IL_5VCI_0015VCI0.23290Isolated non-canonical cWW pairA+BRNA (22-mer) + RNA (12-mer)C1U2G3*C10U11G12cWWcWwcWW
101 IL_4IOA_0104IOA0.24950Isolated non-canonical cWW pair (H)X LSU rRNAA584U585G586*C573C574U575cWWcWWcWW
102 IL_5J7L_2575J7L0.22280Isolated non-canonical cWW pairDA LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
103 IL_4Y4O_1924Y4O0.205902A LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
104 IL_4WF9_0174WF90.18180Isolated non-canonical cWW pairX LSU rRNAA618U619G620*C607C608U609cWWcWWcWW
105 IL_4Y1M_0054Y1M0.21180Isolated non-canonical cWW pairBE. coli yybP-ykoY riboswitchA103U104A105*U4U5U6cWWncWwcWW
106 IL_5TBW_0165TBW0.29970Isolated non-canonical cWW pair1 LSU rRNAU429U430U431*A628U629A630cWWcWW
107 IL_1U9S_0071U9S0.32980Isolated non-canonical cWW pairARIBONUCLEASE PC191A192C193*G177C178G179cWWcWWcWW
108 IL_5AOX_0015AOX0.35590Isolated non-canonical cWW pairCALU JO CONSENSUS RNAC18A19C20*G9C10G11cWWcWWcWW
109 IL_5TBW_1225TBW0.31350Isolated non-canonical cWW pair1 LSU rRNAU3280U3281U3282*A3168U3169A3170cWWcWwcWW
110 IL_5TBW_0345TBW0.26290Isolated non-canonical cWW pair1 LSU rRNAU954U955U956*A965U966A967cWWcWwcWW
111 IL_1U6B_0051U6B0.26520Isolated non-canonical cWW pairB197-MERC100U101U102*A117U118G119cWWcWwcWW
112 IL_3U4M_0013U4M0.26790Isolated non-canonical cWW pairB LSU rRNAC2179U2180U2181*A2108U2109G2110cWWcWwcWW
113 IL_4V9F_0474V9F0.30560Isolated non-canonical cWW pair0 LSU rRNAC1303U1304C1305*G1349U1350G1351cWWcWwcWW
114 IL_1MZP_0011MZP0.32190Isolated non-canonical cWW pairBfragment of 23S rRNAC50U51U52*A4U5G6cWWcWwcWW
115 IL_2ET8_0042ET80.34200Isolated non-canonical cWW pairA+BRNA (22-mer)G18U19C20*G27U28C29cWWcWwcWW
116 IL_3BNT_0013BNT0.30140Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18||||4_665U19||||4_665C20||||4_665*G4U5C6cWWcWwcWW
117 IL_3BNT_0063BNT0.30140Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18U19C20*G4||||4_665U5||||4_665C6||||4_665cWWcWwcWW
118 IL_3BNN_0053BNN0.33660Isolated non-canonical cWW pairD+CA site of human ribosomeG17U18C19*G3U4C5cWWcWwcWW
119 IL_3BNR_0123BNR0.31750Isolated non-canonical cWW pairD+CA site of human mitochondrial ribosome, chain threeG3U4C5*G19U20C21cWWcWwcWW
120 IL_4K31_0044K310.34460Isolated non-canonical cWW pairB+CRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
121 IL_4K31_0014K310.34320Isolated non-canonical cWW pairC+BRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
122 IL_5WTI_0025WTI0.29280Isolated non-canonical cWW pairBRNA (123-MER)G18U19C20*G10U11C12cWWcWwcWW
123 IL_3BNR_0073BNR0.29730Isolated non-canonical cWW pairD+CA site of human mitochondrial ribosome, chain threeG17U18C19*G5U6C7cWWcWwcWW
124 IL_3TD0_0063TD00.28230Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
125 IL_2OE5_0012OE50.29680Isolated non-canonical cWW pairA+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
126 IL_4P3T_0064P3T0.28790Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcWwcWW
127 IL_2O3Y_0042O3Y0.28210Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
128 IL_4KYY_0034KYY0.27960Isolated non-canonical cWW pairB+ARNA 17-merG5U6U7*A11U12C13cWWcWwcWW
129 IL_4KYY_0014KYY0.28250Isolated non-canonical cWW pairA+BRNA 17-merG5U6U7*A11U12C13cWWcWwcWW
130 IL_5ZTM_0025ZTM0.23570Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2G157U158U159*A123U124C125cWWcWwcWW
131 IL_4P3U_0064P3U0.29330Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
132 IL_4P3U_0074P3U0.30550Isolated non-canonical cWW pairC+DRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
133 IL_5B2P_0015B2P0.19030Isolated non-canonical cWW pairBGuide RNAG48U49A50*U24U25C26cWWcWwcWW
134 IL_5TBW_1155TBW0.21150Isolated non-canonical cWW pair1 LSU rRNAA3040U3041U3042*A3012U3013U3014cWWcWwcWW
135 IL_2O3V_0042O3V0.22390Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
136 IL_4V88_4174V880.31750Isolated non-canonical cWW pairA6 SSU rRNAA973A974C975*G624C625U626cWWcWWcWW
137 IL_1Z7F_0021Z7F0.32430Isolated non-canonical cWW pairARNA (16-mer)A10A11U12*A5||||6_765C6||||6_765U7||||6_765cWWcWWcWW
138 IL_5Y85_0065Y850.36620Isolated non-canonical cWW pairC+DRNA (18-mer) + DNA/RNA (50-MER)G13A14C15*G4C5C6cWWcWWcWW
139 IL_5Y7M_0075Y7M0.34910Isolated non-canonical cWW pairDRNA (52-MER)G37A38U39*A11C12C13cWWcWWcWW
140 IL_1ZX7_0061ZX70.30070Isolated non-canonical cWW pairF+ERNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
141 IL_1ZX7_0041ZX70.34880Isolated non-canonical cWW pairD+CRNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
142 IL_1T0E_0021T0E0.34350Isolated non-canonical cWW pairC+ARNA (17-mer)G14U15C16*G10||AU11C12cWWcWwcWW
143 IL_4V88_4464V880.37200Isolated non-canonical cWW pairA6 SSU rRNAG1213U1214C1215*G1448U1449U1450cWWncWwcWW
144 IL_4P43_0044P430.28070Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcWwcWW
145 IL_5Z1I_0015Z1I0.25610Isolated non-canonical cWW pairARNA (21-mer)G5U6C7*G19||||8_555U20||||8_555C21||||8_555cWWcWwcWW
146 IL_5Z1I_0045Z1I0.25610Isolated non-canonical cWW pairARNA (21-mer)G5||||8_555U6||||8_555C7||||8_555*G19U20C21cWWcWwcWW
147 IL_3GM7_0013GM70.22070Isolated non-canonical cWW pairG+HRNA (18-mer)C1U2G3*C16U17G18cWWcWW
148 IL_3SZX_0033SZX0.21790Isolated non-canonical cWW pairB+ARNA (19-mer)C7U8G9*C13U14G15cWWncWwcWW
149 IL_4TS2_0044TS20.19930Isolated non-canonical cWW pairX+YSpinach aptamer RNA, bimolecular constructG20U21G22*C77U78C79cWWcWwcWW
150 IL_4P3T_0054P3T0.18281Isolated non-canonical cWW pairA+BRNA (23-mer)G16A18G19*C30C31C32cWWcWWcWW
151 IL_6IA2_0046IA20.24060Isolated non-canonical cWW pairA+BRNA (19-mer)G11A12G13*C7C8C9cWWcWWcWW
152 IL_5ED2_0045ED20.24720Isolated non-canonical cWW pairE+FRNA (23-mer)G14A15G16*C8C9C10cWWcWWcWW
153 IL_6IA2_0026IA20.20100Isolated non-canonical cWW pairB+ARNA (19-mer)G11||AA12G13*C7C8C9cWWcWWcWW
154 IL_6IA2_0056IA20.20490Isolated non-canonical cWW pairB+ARNA (19-mer)G2A3G4*C16C17C18cWWcWWcWW
155 IL_4LFB_0614LFB0.19330Isolated non-canonical cWW pairA SSU rRNAG1474G1475G1476*C1424U1425C1426cWWncWWcWW
156 IL_6IA2_0016IA20.22060Isolated non-canonical cWW pairA+BRNA (19-mer)G2A3G4*C16C17C18cWWcWWcWW
157 IL_1KFO_0031KFO0.25640Isolated non-canonical cWW pairARNA (19-mer)G11A12G13*C6||||8_555C7||||8_555U8||||8_555cWWcWWcWW
158 IL_1KFO_0021KFO0.25640Isolated non-canonical cWW pairARNA (19-mer)G11||||8_555A12||||8_555G13||||8_555*C6C7U8cWWcWWcWW
159 IL_5ED1_0025ED10.32080Isolated non-canonical cWW pairB+CRNA (23-mer)G13A14C15*G9A10C11cWWcWwcWW
160 IL_4V88_4674V880.30360Isolated non-canonical cWW pairA6 SSU rRNAU1650A1651C1652*G1748A1749A1750cWWcWwcWW
161 IL_1NBS_0061NBS0.47240B RNase P class BG125G126C127*G116U117C118cWWncWWcWW
162 IL_1L9A_0031L9A0.35610Bsignal recognition particle RNA S domainC123G124G125*C225U226G227cWWncWWcWW
163 IL_3ICQ_0033ICQ0.33050ERNA (62-MER)G3G4A5*U68U69C70cWWncWWcWW
164 IL_4V88_4334V880.31600Isolated non-canonical cWW pairA6 SSU rRNAU917U918A919*U893U894G895ncWWcWwcWW
165 IL_5J7L_2735J7L0.33630Isolated non-canonical cWW pairDA LSU rRNAA905U906G907*U870U871U872cWWcWwcWW
166 IL_4V9K_0644V9K0.30610Isolated non-canonical cWW pairAW tRNAC50A51G52*C62C63G64cWWncWWacWW
167 IL_4J50_0054J500.33970B+ARNA (19-mer)C10||||2_555A11||||2_555G12||||2_555*C10||||2_555A11||||2_555G12||||2_555cWWcWW
168 IL_4J50_0024J500.33970Isolated non-canonical cWW pairB+ARNA (19-mer)C10A11G12*C10A11G12cWWcWW
169 IL_4J50_0084J500.33970B+ARNA (19-mer)C10||||3_555A11||||3_555G12||||3_555*C10||||3_555A11||||3_555G12||||3_555cWWcWW
170 IL_4V88_4194V880.34080Isolated non-canonical cWW pairA6 SSU rRNAC646G647G648*C686G687G688cWWcWW
171 IL_1Y27_0011Y270.35140Isolated non-canonical cWW pairXPurine riboswitchU25C26G27*C43A44A45cWWcWWcWW
172 IL_353D_001353D0.28050A+BRNA (12-mer)G8U9G10*U15G16C17cWWncWWacWW
173 IL_4AOB_0054AOB0.36800Isolated non-canonical cWW pairA SAM-I riboswitchG71A72G73*C78G79U80cWWncWWcWW
174 IL_4AOB_0104AOB0.36800A SAM-I riboswitchG71||||7_555A72||||7_555G73||||7_555*C78||||7_555G79||||7_555U80||||7_555cWWncWWcWW
175 IL_5TBW_1105TBW0.37540Isolated non-canonical cWW pair1 LSU rRNAG2912C2913G2914*C2889A2890U2891cWWncWWacWW
176 IL_5J7L_0615J7L0.38160Isolated non-canonical cWW pairAA SSU rRNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
177 IL_4LFB_0594LFB0.38610Isolated non-canonical cWW pairA SSU rRNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
178 IL_5TBW_0425TBW0.28360Isolated non-canonical cWW pair1 LSU rRNAA1009G1010A1011*U1039A1040U1041cWWcWWcWW
179 IL_2R8S_0012R8S0.28770Isolated non-canonical cWW pairRP4-P6 RNA RIBOZYME DOMAINC208A210C211*G110G111G112cWWcWWcWW
180 IL_1N33_0701N330.29920Z+YA-SITE MESSENGER RNA FRAGMENTU1U2U3*G34G35A36cWWncWWacWW
181 IL_4V88_3854V880.23090Isolated non-canonical cWW pairA6 SSU rRNAU35C36U37*A471U472A473cWWcWWcWW
182 IL_1ZZ5_0041ZZ50.25390Isolated non-canonical cWW pairC+DRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
183 IL_1ZZ5_0021ZZ50.27390Isolated non-canonical cWW pairA+BRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
184 IL_4ZC7_0044ZC70.21830Isolated non-canonical cWW pairA+BRNA duplexG19U20C21*G28U29C30cWWncWwcWW
185 IL_5E81_3765E810.332803L tRNAG27U28U29*A41A42U43ncWWncWWcWW
186 IL_4YHW_0014YHW0.23660Isolated non-canonical cWW pairC+EU4 snRNA fragment + U6 snRNA fragmentA11C12G13*C68C69U70cWWcWW
187 IL_4WF9_0424WF90.28380Isolated non-canonical cWW pairX LSU rRNAG1081C1082G1083*C1160A1161C1162cWWncWWcWW
188 IL_4IOA_0254IOA0.30220X LSU rRNAA936C937G938*C864A865U866cWWcWWcWW
189 IL_4P3U_0124P3U0.31160Isolated non-canonical cWW pairC+DRNA (23-mer)G19U20C21*G28U29C30cWWncwWcWW
190 IL_2ZNI_0012ZNI0.25470Cbacterial tRNAU39U40C41*G29G30A31cWWncWWacWW
191 IL_4ZC7_0014ZC70.22230Isolated non-canonical cWW pairB+ARNA duplexG42U43C44*G5U6C7cWWncWwcWW
192 IL_3LA5_0013LA50.23820APurine riboswitchU16U17C18*G78G79A80cWWncWWcWW
193 IL_3TD0_0013TD00.20260Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
194 IL_6CZR_1186CZR0.22970Isolated non-canonical cWW pair1a SSU rRNAC94A95G96*C68G69G70cWWncWWcWW
195 IL_3DIL_0063DIL0.21270Isolated non-canonical cWW pairARNA (174-MER)G115G116G117*C137A138C139cWWcWWcWW
196 IL_5TBW_1275TBW0.27090Isolated non-canonical cWW pair1 LSU rRNAG3252G3253G3254*C3233A3234C3235cWWcWWcWW
197 IL_3D0U_0063D0U0.21820Isolated non-canonical cWW pairALysine Riboswitch RNAG112G113G114*C134A135C136cWWcWWcWW
198 IL_5MSF_0055MSF0.22431RRNA (18-mer)G3||||P_PG4||||P_PG6||||P_P*C13||||P_PA14||||P_PC15||||P_P
199 IL_5MSF_0015MSF0.22431Isolated non-canonical cWW pairRRNA (18-mer)G3||||P_1G4||||P_1G6||||P_1*C13||||P_1A14||||P_1C15||||P_1cWWcWWcWW
200 IL_4LFB_0104LFB0.24340Isolated non-canonical cWW pairA SSU rRNAG190|||KU190|||LG191*C186C187C188cWWcWWcWW
201 IL_4V9F_0174V9F0.22820Isolated non-canonical cWW pair0 LSU rRNAA597C598G599*C558U559U560cWWcWWcWW
202 IL_4V9F_1054V9F0.21510Isolated non-canonical cWW pair9 5S rRNAC107C108G109*C72A73G74cWWcWWcWW
203 IL_5TBW_3785TBW0.27911Isolated non-canonical cWW pairAS 5S rRNAA84G85G87*C94A95U96cWWcWWcWW
204 IL_4V88_4444V880.28010Isolated non-canonical cWW pairA6 SSU rRNAG1464C1465G1466*C1173C1174U1175cWWncBWcWW
205 IL_5TBW_0445TBW0.34380Isolated non-canonical cWW pair1 LSU rRNAG1087U1088G1089*C1069U1070U1071cWWncWwcWW
206 IL_4V83_2354V830.25150Isolated non-canonical cWW pairCVdomain 3 of PSIC IGR IRES RNAG6173U6174G6175*C6153U6154C6155cWWncwWcWW
207 IL_4ZDO_0014ZDO0.30670Isolated non-canonical cWW pair (H)ESelenocysteine transfer RNAA5||A|CU6||AG7||A*C65||AU66||AU67||A|AcWWcwWcWW
208 IL_3RG5_0033RG50.34850BSelenocysteine transfer RNAA5|||B|1_556U6||||1_556G7||||1_556*C66||||1_556U67||||1_556U67|||A|1_556cWWcwWcWW
209 IL_3RG5_0023RG50.34850Isolated non-canonical cWW pairBSelenocysteine transfer RNAA5|||BU6G7*C66U67U67|||AcWWcwWcWW
210 IL_4KZD_0034KZD0.34490Isolated non-canonical cWW pairRRNA (84-MER)G17U18G19*C66U67C68cWWcwWcWW
211 IL_4V88_4264V880.36641Isolated non-canonical cWW pairA6 SSU rRNAA850U851C852*G819U821U822cWWcwWcWW
212 IL_1YZ9_0011YZ90.31840Isolated non-canonical cWW pairC+DRNA (11-mer)A4C5U6*A15C16U17cWWncWBcWW
213 IL_1YZ9_0021YZ90.30080Isolated non-canonical cWW pairF+ERNA (11-mer)A15C16U17*A4C5U6cWWncWBcWW
214 IL_5TBW_1125TBW0.35950Isolated non-canonical cWW pair1 LSU rRNAA2926C2927C2928*G2918A2919U2920cWWcWWcWW
215 IL_3MEI_0023MEI0.36050Isolated non-canonical cWW pairB+ARNA (23-mer)G13C14C15*G8C9C10cWWncWBcWW
216 IL_5CCB_0015CCB0.35040Isolated non-canonical cWW pairN tRNAA31C32U33*A37A38U39cWWcWWcWW
217 IL_5CCB_0025CCB0.35040N tRNAA31||||7_555C32||||7_555U33||||7_555*A37||||7_555A38||||7_555U39||||7_555cWWcWWcWW
218 IL_5TBW_0795TBW0.36680Isolated non-canonical cWW pair1 LSU rRNAG1940C1941U1942*A2106A2107C2108cWWcWWcWW
219 IL_6OL3_0026OL30.33650Isolated non-canonical cWW pairC VA RNAG78C79C80*G53A54C55cWWcWWcWW
220 IL_2O3V_0012O3V0.30260Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
221 IL_4P3T_0014P3T0.27970Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWncwWcWW
222 IL_2OE8_0012OE80.33450Isolated non-canonical cWW pairB+ARNA (17-mer)G1494U1495C1496*G1405U1406C1407cWWcwWcWW
223 IL_2O3Y_0012O3Y0.30830Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
224 IL_3BNN_0083BNN0.32790Isolated non-canonical cWW pairC+DA site of human ribosomeG17U18C19*G3U4C5cWWcwWcWW
225 IL_1MFQ_0021MFQ0.31720Isolated non-canonical cWW pairA SRP RNAA228U229C230*G120U121U122cWWcwWcWW
226 IL_4NGF_0024NGF0.32500Isolated non-canonical cWW pairG+HRNA (17-mer)G7U8C9*G7U8C9cWWncwWcWW
227 IL_6CZR_1576CZR0.42320Isolated non-canonical cWW pair1a SSU rRNAG1044U1045C1046*G1175U1176C1177cWWncwWcWW
228 IL_5J7L_0505J7L0.44280Isolated non-canonical cWW pairAA SSU rRNAG1061U1062C1063*G1193U1194C1195cWWcwWcWW
229 IL_4LFB_0474LFB0.42310Isolated non-canonical cWW pairA SSU rRNAG1061U1062C1063*G1193U1194C1195cWWcwWcWW
230 IL_4P43_0014P430.39300Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
231 IL_2O3X_0042O3X0.33160Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
232 IL_4V84_0714V840.42190AVRNA (34-MER)G6192U6193C6194*G6183A6184U6185ncWWcWWncWWcWW
233 IL_4KR9_0024KR90.40070XRNA (39-MER)G28U29C30*G6A7U8cWWcWWcWW
234 IL_4KR9_0014KR90.39970MRNA (39-MER)G28U29C30*G6A7U8cWWcWWcWW
235 IL_5E81_3715E810.31370Self complementary1K tRNAG27U28U29*A41A42U43ncWWcWWcWW
236 IL_5UNE_0035UNE0.37110Isolated non-canonical cWW pairA+BRNA (47-MER)G12G13C14*G31G32C33cWWcWW
237 IL_5UNE_0075UNE0.45990Isolated non-canonical cWW pairB+ARNA (47-MER)G12G13C14*G31G32C33ncWWcWW
238 IL_4IOA_0794IOA0.47810X LSU rRNAG2078A2079U2080*A2175U2176U2177cWWncWWcWW
239 IL_4M6D_0114M6D0.33720Isolated non-canonical cWW pairHaptamerG12G13C14*G46A47C48cWWcWWncWW
240 IL_4M4O_0024M4O0.31790Isolated non-canonical cWW pairBRNA (59-MER)G12G13C14*G46A47C48cWWcWWcWW
241 IL_5TBW_0685TBW0.37180Isolated non-canonical cWW pair1 LSU rRNAG1661G1662C1663*G1786A1787C1788cWWcWWcWW
242 IL_3IVK_0023IVK0.39850Isolated non-canonical cWW pairMclass I ligase productA102A103C104*G87G88U89cWWcWWcWWncWW
243 IL_3HHN_0043HHN0.36320Isolated non-canonical cWW pairEClass I ligase ribozyme, self-ligation productA102A103C104*G87G88U89cWWcWWcWW
244 IL_4V88_4724V880.40760Isolated non-canonical cWW pairA6 SSU rRNAG1672G1673C1674*G1727A1728C1729cWWcWWcWW
245 IL_4LFB_0634LFB0.36520Isolated non-canonical cWW pairA SSU rRNAG1435U1436C1437*G1464C1465C1466cWWcWWcWW
246 IL_5TBW_0465TBW0.36840Isolated non-canonical cWW pair1 LSU rRNAA1120U1121U1122*A1136C1137U1138cWWcWWcWW
247 IL_6CZR_1716CZR0.39450Isolated non-canonical cWW pair1a SSU rRNAG1418U1419C1420*G1442C1443C1444cWWncWWcWW
248 IL_5TBW_0215TBW0.41000Isolated non-canonical cWW pair1 LSU rRNAG792C793U794*G668U669C670cWWcWWcWW
249 IL_4IOA_0194IOA0.34050Isolated non-canonical cWW pair (H)X LSU rRNAG767U768C769*G754C755C756cWWcWWcWW
250 IL_4V88_4654V880.27780Isolated non-canonical cWW pairA6 SSU rRNAG1642U1643C1644*G1757U1758C1759cWWcWW
251 IL_5D0B_0015D0B0.37990Isolated non-canonical cWW pairFRNA (17-mer)A37A38U39*A31C32U33cWWcWWcWW
252 IL_5M0H_0015M0H0.33051Other ILAASH1 E3 (42 nt-TL/TLR)A37U38U39*A4A5U7cWWcWW
253 IL_4V8Q_1884V8Q0.35460BY SsrAC20A21G22*U56U57G58cWWncWWncWW
254 IL_5M73_0035M730.38651A SRP RNAC230G232U233*A118A119G120cWWncWWcWW
255 IL_4V9F_0774V9F0.55150Isolated near basepair0 LSU rRNAG2237A2238C2239*G2136A2137C2138cWWncWW
256 IL_5H1K_0015H1K0.53260Isolated non-canonical cWW pairD+CU4 snRNA (13-mer)G7A8C9*G7A8C9cWWcWW
257 IL_4V88_4064V880.62940Isolated near basepairA6 SSU rRNAC411A412U413*A420A421G422cWWcWW
258 IL_5TBW_0575TBW0.56001Isolated cWS basepair1 LSU rRNAA1428U1430G1431*C1376G1377U1378cWWcSWcWW
259 IL_1U6B_0011U6B0.56801Isolated non-canonical cWW pairB197-MERG19C20G22*C29A30C31cWWncWWcWW
260 IL_4K31_0034K310.46021Isolated non-canonical cWW pairB+CRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
261 IL_4K31_0024K310.47781Isolated non-canonical cWW pairC+BRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
262 IL_4RUM_0014RUM0.53741Isolated non-canonical cWW pairANiCo riboswitch RNAG13A14C16*G88A89C90cWWcwWcWW
263 IL_6CZR_1286CZR0.52631Single bulged G, near cWW1a SSU rRNAC382U383A385*U371G372G373cWWncWWcWW
264 IL_5UNE_0045UNE0.48460Isolated non-canonical cWW pairB+ARNA (47-MER)C27A28G29*U16A17G18cWWcwWcWW
265 IL_5ZTM_0015ZTM0.62420Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2C162C163G164*U118A119G120cWWncWWcWW
266 IL_5J7L_3265J7L0.39610Isolated non-canonical cWW pairDA LSU rRNAC2232U2233G2234*U2085U2086G2087cWWcwWcWW
267 IL_4Y4O_2564Y4O0.409502A LSU rRNAC2085U2086G2087*U2232U2233G2234cWWcwWcWW
268 IL_4IOA_0784IOA0.38690Isolated non-canonical cWW pair (H)X LSU rRNAC2068U2069G2070*U2211U2212G2213cWWcwWcWW
269 IL_4V88_4244V880.41280Isolated non-canonical cWW pairA6 SSU rRNAA799U800G801*U748U749U750cWWcwWcWW
270 IL_4WF9_0954WF90.59872Isolated non-canonical cWW with bulgesX LSU rRNAG2601C2602G2605*C2537U2538C2539cWWncWWcWW
271 IL_5J7L_3405J7L0.63892Isolated non-canonical cWW with bulgesDA LSU rRNAG2574C2575G2578*C2510U2511C2512cWWncWWcWW
272 IL_4Y4O_2724Y4O0.63652Isolated non-canonical cWW with bulges (H)2A LSU rRNAG2574C2575G2578*C2510U2511C2512cWWncWWcWW
273 IL_4IOA_0914IOA0.64112Isolated non-canonical cWW with bulges (H)X LSU rRNAG2553C2554G2557*C2489U2490C2491cWWncWWcWW
274 IL_5TBW_1085TBW0.66892Isolated non-canonical cWW with bulges1 LSU rRNAG2943U2944G2947*C2879U2880C2881cWWcwWcWW
275 IL_4V9F_0974V9F0.65131Isolated non-canonical cWW with bulges0 LSU rRNAG2900C2901C2903*G2855A2856C2857cWWncWWcWW
276 IL_4IOA_1044IOA0.65441Y 5S rRNAG66C67G69*C19A20C21cWWcWWcWW
277 IL_5ML7_0105ML70.53861Isolated non-canonical cWW with bulgesB23S ribosomal RNAG2196C2197A2199*U2181A2182C2183cWWcWWcWW
278 IL_3KTW_0023KTW0.59211Isolated non-canonical cWW with bulgesC SRP RNAA177U178C180*G152G153U154cWWncSHcWWncWW
279 IL_5M73_0055M730.75690Isolated non-canonical cWW pair (H)A SRP RNAA163G164G165*U132A133U134cWWncSHncWW
280 IL_5J7L_3075J7L0.83774Intercalated tWHDA LSU rRNAC1990U1991U1993*A1669C1670G1674cWWcWW
281 IL_4WF9_0654WF90.85434Intercalated tWHX LSU rRNAC2017U2018U2020*A1713C1714G1718cWWcWW
282 IL_4V9F_0624V9F0.84014Intercalated tWH0 LSU rRNAC2031U2032U2034*A1747U1748G1752cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC41
CUG*CUG36
CAG*CAG9
CCG*CCG8
CUG*CCG7
GAG*CCC5
ACU*ACU4
GUU*AUC4
AUG*CCU4
GGC*GAC4
GCGAG*CUC4
UUU*AUA3
CUU*AUG3
GUG*CUC3
GAC*GAC3
GGG*CAC3
AUG*CUU3
GUC*GAU3
GUC*GCC3
CUG*UUG3
AGU*AAU2
CAG*UAG2
UUA*UUG2
UUG*UUG2
GAAG*CGC2
GUG*CCC2
AGG*UAU2
GGG*CUC2
ACG*CAU2
UGG*UGA2
GAG*UCC2
CAG*CGG2
CAC*GCG2
AAU*ACU2
GAG*CCU2
AUG*UUU2
GAG*CGU2
GGG*CAU2
GUU*AAU2
UUC*GGA2
GGAG*CAC2
ACU*AAU2
GGC*GGC2
AAC*GGU2
AAAG*CGU2
CGC*GGAG1
GGG*CUU1
GAG*CUU1
GGC*GCC1
GAAG*CAC1
GUU*AUAC1
ACA*UUU1
AUC*GGU1
GACG*UAC1
GCG*UGC1
GUG*UUAUC1
GCC*GGC1
CCC*GAG1
UCG*CCG1
GAAUC*GAC1
CUAC*GAG1
UUGC*GGA1
GAGG*CAC1
AAG*CGU1
UCA*UCA1
CCU*AAG1
CUA*UCG1
UUA*UUA1
ACU*AUU1
AUA*UUU1
CUC*GUG1
GUA*UUC1
AUU*AUU1
AAC*GCU1
GAC*GCC1
GAU*ACC1
GUC*GUU1
GAAG*CCC1
UAC*GAA1
GGC*GUC1
CGG*CUG1
GGA*UUC1
CAG*CCG1
CGG*CGG1
UCG*CAA1
GUG*UGC1
GCG*CAU1
AGA*UAU1
CAC*GGG1
UUU*GGA1
UCU*AUA1
ACG*CCU1
GCG*CAC1
ACG*CUU1
CCG*CAG1
AGUG*CAU1
GCG*CCU1
GUG*CUU1
AUC*GUUU1
ACC*GAU1
GCC*GCC1
GCU*AAC1
GCC*GAC1
AUC*GUU1
GAU*AUU1
AUU*ACU1
GCU*GUC1
AUU*AACU1
CAG*UUG1
CAGU*AAG1
CAU*AAG1
AGUG*CGU1
GCCG*CAC1
GAGC*GAC1
CUGA*UGG1
CCG*UAG1
GUGAG*CUC1
GCAC*GAC1
GCAG*CAC1
GCCA*UAC1
AUUC*GGU1
CUGU*ACUAGG1
CUGU*ACUCGG1
CUGU*AUUCGG1
Non-Watson-Crick part of the motif
SequenceCounts
U*U110
U*C18
C*C17
A*C17
A*A16
G*A14
C*A14
A*G8
G*U6
C*U5
U*G5
G*G5
U*A5
AA*G4
CGA*U4
A*U3
AG*A3
C*G2
UG*G2
GA*A2
CC*A2
CA*A2
G*GA1
G*C1
AA*A1
U*UA1
AC*A1
U*UAU1
AAU*A1
UA*A1
AA*C1
GU*A1
U*UU1
U*AC1
GU*G1
UGA*U1
UU*G1
UG*CUAG1
UG*CUCG1
UG*UUCG1

Release history

Release3.46
Date2021-06-23
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (201)
  • (39)
  • Isolated cWH basepair (11)
  • Isolated non-canonical cWW pair (H) (8)
  • Isolated non-canonical cWW with bulges (7)
  • Intercalated tWH (3)
  • Isolated non-canonical cWW with bulges (H) (2)
  • Isolated near basepair (2)
  • Single bulged G, near cWW (2)
  • Isolated non-canonical cWW contact (2)
  • Decoding loop related (1)
  • Self complementary (1)
  • Other IL (1)
  • Multiple bulged bases, near cWW (1)
  • Isolated cWS basepair (1)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.45 | Max 1.14
    Help

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