6LQT Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6LQT_008 | 1/SA/70:81 | No text annotation Not in a motif group | ||
| HL_6LQT_009 | 1/SA/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6LQT_010 | 1/SA/190:195 | No text annotation Not in a motif group | ||
| HL_6LQT_011 | 1/SA/230:235 | UNCG Not in a motif group | geometric HL_4WF9_040 HL_03562.2 | |
| HL_6LQT_013 | 1/SA/276:279 | No text annotation Not in a motif group | homologous HL_4V88_192 HL_53837.1 | |
| HL_6LQT_014 | 1/SA/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6LQT_015 | 1/SA/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6LQT_016 | 1/SA/491:496 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6LQT_017 | 1/SA/520:532 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_6LQT_018 | 1/SA/561:566 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6LQT_022 | 1/SA/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6LQT_023 | 1/SA/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6LQT_024 | 1/SA/1055:1064 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_6LQT_025 | 1/SA/1129:1139 | No text annotation Not in a motif group | ||
| HL_6LQT_028 | 1/SA/1594:1602 | No text annotation Not in a motif group | ||
| HL_6LQT_029 | 1/SA/1629:1636 | No text annotation Not in a motif group | ||
| HL_6LQT_030 | 1/SA/1698:1703 | Other HL Not in a motif group | geometric HL_5J7L_164 HL_87030.2 | |
| HL_6LQT_031 | 1/SA/1777:1784 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6LQT_001 | No text annotation | ||
| HL_6LQT_002 | No text annotation | ||
| HL_6LQT_003 | No text annotation | ||
| HL_6LQT_004 | No text annotation | ||
| HL_6LQT_005 | No text annotation | ||
| HL_6LQT_006 | No text annotation | ||
| HL_6LQT_007 | No text annotation | ||
| HL_6LQT_012 | T-loop with 1 bulged base | ||
| HL_6LQT_019 | No text annotation | ||
| HL_6LQT_020 | No text annotation | ||
| HL_6LQT_021 | No text annotation | ||
| HL_6LQT_026 | No text annotation | ||
| HL_6LQT_027 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6LQT_001 | 1/3A/6:7, 1/SA/1117:1119 | Single bulged G Not in a motif group | geometric IL_3IGI_004 IL_00225.2 | |
| IL_6LQT_002 | 1/3A/48:51, 1/5A/465:470 | No text annotation Not in a motif group | ||
| IL_6LQT_003 | 1/3A/78:85, 1/3A/325:329 | No text annotation Not in a motif group | ||
| IL_6LQT_004 | 1/3A/97:98, 1/3A/317:319 | No text annotation Not in a motif group | ||
| IL_6LQT_005 | 1/3A/101:106, 1/3A/310:314 | No text annotation Not in a motif group | ||
| IL_6LQT_008 | 1/5A/17:18, 1/5A/62:64 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.2 | |
| IL_6LQT_009 | 1/5A/497:498, 1/5A/540:542 | No text annotation Not in a motif group | ||
| IL_6LQT_010 | 1/5A/550:552, 1/5A/585:587 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_002 IL_82068.2 | |
| IL_6LQT_011 | 1/SA/24:26, 1/SA/600:601 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_6LQT_012 | 1/SA/35:37, 1/SA/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_6LQT_013 | 1/SA/50:52, 1/SA/428:429 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_6LQT_014 | 1/SA/58:63, 1/SA/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6LQT_015 | 1/SA/64:69, 1/SA/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6LQT_016 | 1/SA/109:112, 1/SA/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6LQT_017 | 1/SA/113:116, 1/SA/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6LQT_018 | 1/SA/117:122, 1/SA/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6LQT_019 | 1/SA/144:149, 1/SA/165:171 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4LFB_009 IL_39753.1 | |
| IL_6LQT_020 | 1/SA/150:153, 1/SA/161:164 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.2 | |
| IL_6LQT_021 | 1/SA/186:189, 1/SA/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_6LQT_022 | 1/SA/204:206, 1/SA/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_7RQB_022 IL_05564.2 | |
| IL_6LQT_023 | 1/SA/206:208, 1/SA/257:259 | No text annotation Not in a motif group | homologous IL_4V88_398 IL_95997.1 | |
| IL_6LQT_024 | 1/SA/265:267, 1/SA/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6LQT_025 | 1/SA/270:273, 1/SA/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6LQT_026 | 1/SA/275:276, 1/SA/279:281 | No text annotation Not in a motif group | homologous IL_8C3A_409 IL_83039.13 | |
| IL_6LQT_027 | 1/SA/311:316, 1/SA/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6LQT_028 | 1/SA/318:323, 1/SA/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_6LQT_029 | 1/SA/439:441, 1/SA/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_6LQT_030 | 1/SA/443:447, 1/SA/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6LQT_031 | 1/SA/447:448, 1/SA/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6LQT_032 | 1/SA/480:482, 1/SA/505:508 | Isolated cWH basepair Not in a motif group | geometric IL_6F4H_001 IL_51629.2 | |
| IL_6LQT_033 | 1/SA/514:516, 1/SA/536:543 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_6LQT_034 | 1/SA/516:518, 1/SA/533:536 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_411 IL_46796.1 | |
| IL_6LQT_035 | 1/SA/518:520, 1/SA/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_6LQT_036 | 1/SA/551:552, 1/SA/584:587 | Multiple bulged bases Not in a motif group | geometric IL_3IGI_013 IL_71530.2 | |
| IL_6LQT_037 | 1/SA/552:559, 1/SA/568:584 | No text annotation Not in a motif group | ||
| IL_6LQT_038 | 1/SA/624:626, 1/SA/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6LQT_039 | 1/SA/627:631, 1/SA/969:972 | No text annotation Not in a motif group | ||
| IL_6LQT_040 | 1/SA/631:632, 1/SA/967:969 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_6LQT_041 | 1/SA/646:648, 1/SA/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_6LQT_042 | 1/SA/652:655, 1/SA/679:682 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_128 IL_30621.2 | |
| IL_6LQT_043 | 1/SA/655:658, 1/SA/677:679 | No text annotation Not in a motif group | ||
| IL_6LQT_046 | 1/SA/865:866, 1/SA/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_6LQT_047 | 1/SA/866:870, 1/SA/957:962 | No text annotation Not in a motif group | geometric IL_4V88_422 IL_05145.2 | |
| IL_6LQT_048 | 1/SA/871:873, 1/SA/954:956 | No text annotation Not in a motif group | geometric IL_2R8S_001 IL_95997.1 | |
| IL_6LQT_049 | 1/SA/874:878, 1/SA/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_6LQT_050 | 1/SA/885:888, 1/SA/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6LQT_051 | 1/SA/893:899, 1/SA/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_6LQT_052 | 1/SA/1041:1044, 1/SA/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_6LQT_053 | 1/SA/1051:1053, 1/SA/1066:1067 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_6LQT_054 | 1/SA/1157:1160, 1/SA/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6LQT_055 | 1/SA/1173:1176, 1/SA/1463:1466 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5C5W_003 IL_30621.2 | |
| IL_6LQT_056 | 1/SA/1470:1474, 1/SA/1533:1574 | No text annotation Not in a motif group | ||
| IL_6LQT_057 | 1/SA/1650:1652, 1/SA/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6LQT_058 | 1/SA/1653:1658, 1/SA/1742:1747 | No text annotation Not in a motif group | ||
| IL_6LQT_059 | 1/SA/1659:1661, 1/SA/1740:1741 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6LQT_060 | 1/SA/1664:1668, 1/SA/1733:1737 | No text annotation Not in a motif group | ||
| IL_6LQT_061 | 1/SA/1669:1672, 1/SA/1729:1732 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6LQT_062 | 1/SA/1672:1674, 1/SA/1727:1729 | No text annotation Not in a motif group | geometric IL_5TBW_378 IL_95997.1 | |
| IL_6LQT_063 | 1/SA/1688:1690, 1/SA/1711:1713 | Single stack bend Not in a motif group | geometric IL_5VSU_003 IL_76488.2 | |
| IL_6LQT_064 | 1/SA/1690:1692, 1/SA/1709:1711 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_6LQT_065 | 1/SA/1692:1695, 1/SA/1706:1709 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6LQT_006 | No text annotation | ||
| IL_6LQT_007 | No text annotation | ||
| IL_6LQT_044 | No text annotation | ||
| IL_6LQT_045 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6LQT_001 | 1/SA/633:635, 1/SA/861:865, 1/SA/965:966 | No text annotation Not in a motif group | ||
| J3_6LQT_002 | 1/SA/881:884, 1/SA/928:936, 1/SA/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6LQT_003 | 1/SA/1150:1151, 1/SA/1627:1629, 1/SA/1636:1640 | No text annotation Not in a motif group | ||
| J3_6LQT_004 | 1/SA/1168:1171, 1/SA/1468:1470, 1/SA/1574:1577 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA |
Problematic loops
No problematic loops
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