8CF1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8CF1_001 | 1/A/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_8CF1_002 | 1/A/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.3 | |
| HL_8CF1_003 | 1/A/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_8CF1_004 | 1/A/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.2 | |
| HL_8CF1_005 | 1/A/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_92935.1 | |
| HL_8CF1_006 | 1/A/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.3 | |
| HL_8CF1_007 | 1/A/1265:1270 | GNRA | homologous HL_5J7L_027 NA | |
| HL_8CF1_008 | 1/A/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_8CF1_009 | 1/A/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8CF1_010 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8CF1_001 | 1/A/922:923, 1/A/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_8CF1_002 | 1/A/925:927, 1/A/1390:1391 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_8CF1_003 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_8CF1_004 | 1/A/953:954, 1/A/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_8CF1_005 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform | geometric IL_5J7L_043 NA | |
| IL_8CF1_006 | 1/A/998:999, 1/A/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_8CF1_007 | 1/A/1003:1006, 1/A/1023:1037 | No text annotation | ||
| IL_8CF1_008 | 1/A/1048:1050, 1/A/1208:1209 | Single bulged U | geometric IL_5J7L_046 NA | |
| IL_8CF1_010 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_8CF1_011 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_8CF1_012 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged A | homologous IL_5J7L_049 NA | |
| IL_8CF1_013 | 1/A/1061:1063, 1/A/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_8CF1_014 | 1/A/1124:1128, 1/A/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_8CF1_015 | 1/A/1129:1132, 1/A/1142:1143 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_8CF1_016 | 1/A/1158:1161, 1/A/1175:1181 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_8CF1_017 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_8CF1_018 | 1/A/1255:1258, 1/A/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_8CF1_019 | 1/A/1259:1263, 1/A/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_8CF1_020 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_57885.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8CF1_009 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8CF1_001 | 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_8CF1_002 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_8CF1_003 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_8CF1_004 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation | homologous J3_5J7L_007 NA | |
| J3_8CF1_008 | 1/A/990:997, 1/A/1044:1047, 1/A/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_8CF1_009 | 1/A/1003:1006, 1/A/1023:1027, 1/A/1034:1037 | No text annotation | ||
| J3_8CF1_005 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_8CF1_010 | 1/A/1073:1074, 1/A/1083:1086, 1/A/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_8CF1_006 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_8CF1_011 | 1/A/1116:1118, 1/A/1155:1161, 1/A/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_8CF1_007 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 |
Problematic loops
No problematic loops
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