7ZAG Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/2/16:18,1/2/30:32 | NA | NA |
2 | ➜ | 1/2/36:38,1/2/518:520 | NA | NA |
3 | ➜ | 1/2/54:60,1/2/368:370 | NA | NA |
4 | ➜ | 1/2/62:65,1/2/364:366 | NA | NA |
5 | ➜ | 1/2/71:74,1/2/99:100 | NA | NA |
6 | ➜ | 1/2/75:77,1/2/96:98 | NA | NA |
7 | ➜ | 1/2/125:128,1/2/240:241 | NA | NA |
8 | ➜ | 1/2/128:133,1/2/236:240 | NA | NA |
9 | ➜ | 1/2/145:150,1/2/165:171 | NA | NA |
10 | ➜ | 1/2/187:189,1/2/198:199 | NA | NA |
11 | ➜ | 1/2/249:251,1/2/293:295 | NA | NA |
12 | ➜ | 1/2/251:257,1/2/285:293 | NA | NA |
13 | ➜ | 1/2/258:261,1/2/283:284 | NA | NA |
14 | ➜ | 1/2/298:300,1/2/318:320 | NA | NA |
15 | ➜ | 1/2/301:302,1/2/313:317 | NA | NA |
16 | ➜ | 1/2/302:304,1/2/311:313 | NA | NA |
17 | ➜ | 1/2/376:378,1/2/401:402 | NA | NA |
18 | ➜ | 1/2/378:380,1/2/399:401 | NA | NA |
19 | ➜ | 1/2/380:384,1/2/398:399 | NA | NA |
20 | ➜ | 1/2/384:385,1/2/396:398 | NA | NA |
21 | ➜ | 1/2/386:388,1/2/393:395 | NA | NA |
22 | ➜ | 1/2/466:468,1/2/508:510 | NA | NA |
23 | ➜ | 1/2/469:476,1/2/506:507 | NA | NA |
24 | ➜ | 1/2/476:478,1/2/505:506 | NA | NA |
25 | ➜ | 1/2/478:480,1/2/503:505 | NA | NA |
26 | ➜ | 1/2/481:487,1/2/494:502 | NA | NA |
27 | ➜ | 1/2/545:550,1/2/724:729 | NA | NA |
28 | ➜ | 1/2/560:562,1/2/611:612 | NA | NA |
29 | ➜ | 1/2/563:564,1/2/607:610 | NA | NA |
30 | ➜ | 1/2/571:577,1/2/595:600 | NA | NA |
31 | ➜ | 1/2/581:583,1/2/589:591 | NA | NA |
32 | ➜ | 1/2/621:623,1/2/717:721 | NA | NA |
33 | ➜ | 1/2/624:625,1/2/714:716 | NA | NA |
34 | ➜ | 1/2/625:627,1/2/712:714 | NA | NA |
35 | ➜ | 1/2/627:633,1/2/707:712 | NA | NA |
36 | ➜ | 1/2/635:638,1/2/702:705 | NA | NA |
37 | ➜ | 1/2/641:645,1/2/679:683 | NA | NA |
38 | ➜ | 1/2/651:655,1/2/666:673 | NA | NA |
39 | ➜ | 1/2/738:741,1/2/772:775 | NA | NA |
40 | ➜ | 1/2/741:745,1/2/771:772 | NA | NA |
41 | ➜ | 1/2/746:750,1/2/766:770 | NA | NA |
42 | ➜ | 1/2/750:752,1/2/764:766 | NA | NA |
43 | ➜ | 1/2/789:791,1/2/847:849 | NA | NA |
44 | ➜ | 1/2/791:793,1/2/845:847 | NA | NA |
45 | ➜ | 1/2/858:865,1/2/876:881 | NA | NA |
46 | ➜ | 1/2/865:867,1/2/874:876 | NA | NA |
47 | ➜ | 1/2/893:894,1/2/1367:1369 | NA | NA |
48 | ➜ | 1/2/896:898,1/2/1364:1365 | NA | NA |
49 | ➜ | 1/2/904:907,1/2/1354:1358 | NA | NA |
50 | ➜ | 1/2/912:914,1/2/1315:1317 | NA | NA |
51 | ➜ | 1/2/924:926,1/2/1200:1203 | NA | NA |
52 | ➜ | 1/2/956:958,1/2/1193:1195 | NA | NA |
53 | ➜ | 1/2/969:971,1/2/1002:1005 | NA | NA |
54 | ➜ | 1/2/971:978,1/2/998:1002 | NA | NA |
55 | ➜ | 1/2/980:982,1/2/994:996 | NA | NA |
56 | ➜ | 1/2/1013:1015,1/2/1182:1183 | NA | NA |
57 | ➜ | 1/2/1016:1021,1/2/1178:1181 | NA | NA |
58 | ➜ | 1/2/1021:1023,1/2/1173:1178 | NA | NA |
59 | ➜ | 1/2/1024:1026,1/2/1169:1172 | NA | NA |
60 | ➜ | 1/2/1038:1051,1/2/1064:1067 | NA | NA |
61 | ➜ | 1/2/1089:1092,1/2/1119:1123 | NA | NA |
62 | ➜ | 1/2/1094:1097,1/2/1116:1117 | NA | NA |
63 | ➜ | 1/2/1132:1135,1/2/1149:1155 | NA | NA |
64 | ➜ | 1/2/1136:1138,1/2/1146:1148 | NA | NA |
65 | ➜ | 1/2/1221:1227,1/2/1258:1264 | NA | NA |
66 | ➜ | 1/2/1229:1232,1/2/1251:1256 | NA | NA |
67 | ➜ | 1/2/1232:1236,1/2/1247:1251 | NA | NA |
68 | ➜ | 1/2/1277:1282,1/2/1303:1308 | NA | NA |
69 | ➜ | 1/2/1373:1375,1/2/1470:1473 | NA | NA |
70 | ➜ | 1/2/1375:1378,1/2/1466:1470 | NA | NA |
71 | ➜ | 1/2/1379:1381,1/2/1463:1465 | NA | NA |
72 | ➜ | 1/2/1381:1383,1/2/1460:1463 | NA | NA |
73 | ➜ | 1/2/1386:1388,1/2/1455:1457 | NA | NA |
74 | ➜ | 1/2/1390:1393,1/2/1450:1453 | NA | NA |
75 | ➜ | 1/2/1405:1408,1/2/1435:1438 | NA | NA |
76 | ➜ | 1/2/1476:1478,1/2/1495:1497 | NA | NA |
77 | ➜ | 1/2/1478:1480,1/2/1493:1495 | NA | NA |
78 | ➜ | 1/2/1504:1506,1/5/7:9 | NA | NA |
79 | ➜ | 1/2/1508:1509,1/5/4:5 | NA | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/2/19:29 | NA | NA |
2 | ➜ | 1/2/84:89 | NA | NA |
3 | ➜ | 1/2/155:160 | NA | NA |
4 | ➜ | 1/2/190:197 | NA | NA |
5 | ➜ | 1/2/218:223 | NA | NA |
6 | ➜ | 1/2/268:276 | NA | NA |
7 | ➜ | 1/2/305:310 | NA | NA |
8 | ➜ | 1/2/329:342 | NA | NA |
9 | ➜ | 1/2/351:356 | NA | NA |
10 | ➜ | 1/2/388:393 | NA | NA |
11 | ➜ | 1/2/422:426 | NA | NA |
12 | ➜ | 1/2/444:452 | NA | NA |
13 | ➜ | 1/2/488:493 | NA | NA |
14 | ➜ | 1/2/583:589 | NA | NA |
15 | ➜ | 1/2/656:665 | NA | NA |
16 | ➜ | 1/2/692:699 | NA | NA |
17 | ➜ | 1/2/753:763 | NA | NA |
18 | ➜ | 1/2/809:815 | NA | NA |
19 | ➜ | 1/2/833:838 | NA | NA |
20 | ➜ | 1/2/867:874 | NA | NA |
21 | ➜ | 1/2/935:944 | NA | NA |
22 | ➜ | 1/2/985:991 | NA | NA |
23 | ➜ | 1/2/1054:1061 | NA | NA |
24 | ➜ | 1/2/1104:1109 | NA | NA |
25 | ➜ | 1/2/1139:1145 | NA | NA |
26 | ➜ | 1/2/1238:1245 | NA | NA |
27 | ➜ | 1/2/1288:1297 | NA | NA |
28 | ➜ | 1/2/1331:1339 | NA | NA |
29 | ➜ | 1/2/1419:1424 | NA | NA |
30 | ➜ | 1/2/1484:1489 | NA | NA |
31 | ➜ | 1/4/31:39 | NA | NA |
Problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/2/52:54,1/2/370:376,1/2/402:405 | NA | NA |
2 | ➜ | 1/2/552:554,1/2/618:621,1/2/721:722 | NA | NA |
3 | ➜ | 1/2/639:640,1/2/684:692,1/2/699:701 | NA | NA |
4 | ➜ | 1/2/793:797,1/2/827:833,1/2/838:845 | NA | NA |
5 | ➜ | 1/2/915:918,1/2/1209:1211,1/2/1311:1314 | NA | NA |
6 | ➜ | 1/2/927:935,1/2/944:956,1/2/1195:1199 | NA | NA |
7 | ➜ | 1/2/962:966,1/2/1008:1013,1/2/1183:1189 | NA | NA |
8 | ➜ | 1/2/1027:1033,1/2/1072:1077,1/2/1162:1168 | NA | NA |
9 | ➜ | 1/2/1081:1083,1/2/1129:1132,1/2/1155:1158 | NA | NA |
10 | ➜ | 1/2/1211:1215,1/2/1270:1277,1/2/1308:1311 | NA | NA |
Problematic loops
No problematic loops
Coloring options: