JAR3D
Query RF03019-CCF-3.98 completed
Run on Motif Atlas Version 3.98
using the CaCoFold secondary structure. Run with the Rfam secondary structure.
RF03019 RT-16 RNA
Input Summary
00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
00000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666777777777788888888889999999999000000000011111111112222222222333333333344444444445555555555666666666677777777778888888
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
(((((((((((((((((((((...........................................................)))))))))))))))))))))...................((((((((((.......................................(.......(((............................(((((..((((.....(((.......................................................))).....)).))..))))).)))...........)................................................))).)).)))))........
>URS0000D664D3_12908_1-187
CCCAGGGU------------------------GCAA---------------------------------------------------------GCCCCGGG-------------CCACACAUCCGCCUGC---------------------------------------AGUGCUGGCAGCCUCUUUGGGCACCAGACAUGAAAUUCAACAGCAACCGCCAGUAGAUU-------------AAACC-----------------------------------AAUUGAACGUC-UGAAGCUGUGGUGCCGGCACAGGAGUCUCUG---GUUUCGGGGCAUCCCGUGCUUCUUUAA------------GCA-GG-CGGGUUACCCUUG
>URS0000D696F1_12908_1-209
CCUGAGU-AGCAUG-AGAUAUCUAUUUC----CCAAUA-----------------------------------GACGUUGAUGAAAGCA-GCAAGCUUAGGG------------CUACAUGUAAAUCCAC-------------------------------------UACGACUAACGGCGAUUUAAACCAUUGAGUCAUAAAAUACAGUAACGCUAGCUAGUAGC------AAGG---AAAGAUCCUAGGGAAA------------------UCUUGA----GCCAA-CCC-UACCGUUGCAGUGAAACCUUUG---------------------------------------------------GUG-GA-UUUGCUACUUUCU
>URS0000D6AEE0_12908_1-155
UCUCUGAUGAGAAG-GC---------------UUAAA-----------------------------------------------GCGCUUUUUCGUGGAGG-------------CCACACGCCCACUUGC---------------------------------------------AAUGGCCAUUAUGUUUUUGGGCUAUAAAGUGCAGCUCUGACAA------AAGC-----------GUUU--------------------------------------GCUUAAA-GC--UGAAAGAGCAGUGGAGUUUAGU---------------------------------------------------GCA-AGCAGGGCUACUCUGU
>URS0000D69931_12908_1-181
ACAA-UUUUUGUUUUGACAAGUA---------AAAU------------------------------------------UACUUGAAAAAGCUGUUCUUUGUGUCAAGAAGG---CCACACGCCAGUUCAU---------------------------------------------CAUGACCGUUACAUUUUGAGGUUAUAAAGUUCAAUUGCAACAC---------------------AUAGACUAAGGUUUACAUG---------------------------------G-UGAAGCGAUGGUGAAAAACAAAAG-------------------------------------------------AUG-AAUCUGGCUACAAGAG
>URS0000D6CB1F_12908_1-192
CCAAGCAUCCAUUUAUCUUCUUUUCAG-----UUCUUU------------------------------------CUUAACCUGCCCCAAG-GGAA-CUUGGAG-----------CCACACGCCGCCUUGC----------------------------------------------AGUGCCAGAUUUUUUUCUGGACAUGAAAUACAGCGGCAACAGCUGGUAAGCCAA---------UCUCCAU---------------------------------UUGGCUGAACGUU-UGAAGCCGCAGUGGAAGUGCAGCA-------------------------------------------------GCA-AG-GGGGCUACGGUGC
>URS0000D68335_12908_1-148
CCAAG---------------------------GGAA------------------------------------------------------------CUUGGAG-----------CCACACGCCGCCUUGC----------------------------------------------AGUGUUGGCUUUUCUGCCAACUGUGAAAUACAGCGGCAACACAUAGUAUGGCGA---------UUUCCA---------------------------------UUCGCCUGAAUCCG-UGAAGCCGCAGUGGAAGUGUAGCA-------------------------------------------------GCA-AG-GAGGCUACGGUGC
>URS0000D6C68E_12908_1-198
CCUCACAAG-----------------------GCGGAA------------------------------------------------------CUCAACAGG-------------CUACACGCACAUUCAU---------------------------------------------------AGCGCUCUUAUAGAGCCAUAAAAUACAGAAGCAAUAGCAAGUAAC-------------GAUGAACGACCUUGGGGAAGUUGGGA------------------GCCAA-ACC-UAACGCUUCAGUGGAACUCCGAACAUUGUUCGGAAGCAUAGGGAAUAAACUCCUUUGCUUA------------AUG-AA-AGUGCUACAACUG
>URS0000D69470_12908_1-215
GCACCAGUUAUGUAAGUU--------------UAAG-----------------------------------------------GACUUGUAUAGAGUGUGCUUGAA--------CUACAUGCUUGACCAU---------------------------------AGAAGAAAAUGCAGAUUAAUGCUGCAUUUUAUGACAUAAAAUACAGCAGCGAUAGUUAGUAGUUAUGAUAGCC---UUCG------------------------------GGAAGCCAGAGCAAA-UAC-UAAAGCUGCAGUGCGCAGGUCAAGUUAUCUUGGUCUGUUUG--------------------------------GUG-GU-CAGGCUACCAGUG
>URS0000D6D250_12908_1-158
UCUUGGCAUUGAUCU-----------------CUAG--------------------------------------------------AGAUUGGUGUUAAGG-------------CCACACGCUCUUUUGU---------------------------------------------CGGGACUUUCCUUUUGAGAAGUUAUGAAAUGCAGUUGUGACCUUGAGUAAGAC-----------UUUAUU------------------------------------GUCUGAA-AAU-CGAAAUAACAGUGAAGAUUAG----------------------------------------------------ACA-AA-AAAGCUAUAAGAU
>URS0000D69A93_12908_1-194
CUGUCCCGAGCUGGGCGAGUG-CUGCA-----UAACC-------------------------------------UGCAACCAGUU-CCC--CUCAGGAUGGAG-----------CUACACGUCCUGCCAU-----------------------------------CAUGACAUAAGUCAAAGAAAUACUGACAAUGUUAUAAAAUACAGUCGCAACAGCUGGUAACCU-----------UUCU--------------------------------------UGGUGAA-CGUAUGAAGCGACAGUGAUUAUUCAACG-------------------------------------------------GUGUGC-AGGACUACAGAGU
>URS0000D6C3BB_12908_1-205
UCUUAGCUGUUAAUCU---AAAACUUAU----CCCA-------------------------------------AUAAGUCAAUGAAGAUUGAUAACUUGGA-------------CCACAUGCACGUUAAA--------------------------------------GAUGGCUUAGUCUCUAAAUGAGCAAUAGUUAUAAAAUACAGCGAUGAUAAUUAGUAAUU------------AUGAUAAAACUCUGGGAAAGCUUUUG-----------------AAUGAA-UAU-UAAAGUUGCAGUGUAAUUUG-----------------------------------------------------GUU-AA-UGUGCUACUAACC
>URS0000D6AA1F_12908_1-156
UCCCGCC-------------------------GAAA----------------------------------------------------------GGCAGGGG------------CUACAUGCUCUUUUAC------------------------------------------UACGGCGUUCUCUCUAGAAGAAUGUCAUAAAAUACAACUCUGACUAGA----UAC------------------GUAA---------------------------------GUAC-------UGAAGGGGUGGUGAGCAAAGGCGUUGGUGCAAACUGACGUAACA-----------------------------GUA-AG-AGAGCUAUUCGGG
>URS0000D6B470_12908_1-171
CUAUG---------------------------AGAAGUAAUGA-----------------------------------------------------CAUGGA------------UUACACGCCUGUUCAU-----------------------------------------AAUUCCAACUUCCUAUGAUUUGUUGUGAUAAAAUACAAUAGUAAUAACAAAUAGC-------------GAUGAUAAGUGUGUGGGAAGCGCUUGA-----------------GCGAA-GGU-UAAAACUAUGGUGUAUAUACUAAGU------------------------------------------------AUG-AA-CAAGCUAGUCUCC
>URS0000D6738B_12908_1-153
UCUUGGCAUUUACCCCAA--------------AUA------------------------------------------------UUGGGGCAUC-GUCUGGA-------------CUACACGCCUCUUUGC-------------------------------------------------UAGUCUUGCUUGCGCAAGCAUGAAAUUCAGCCGCGACAUUAAGUAGGC------------CGU----------------------------------------GCCGAA-AUA-UGAAGUGGUGGUGCAUCCUUG----------------------------------------------------GUA-AA-GGGGCUACAUUUG
>URS0000D6A39F_12908_1-177
CCCUAGAU------------------------CCAUAUUAAAAA-------------------------------------------------AUCUUGGG-------------CUACAUGCAUAUUUAC---------------------------------------UAGCACAUUAUUUGAAUUUAUUUUAAGUUAUGAAAUACAACAGCAAUGGUUAGUAAU-------------AAUGAUAGAACCUUGGGGAAGUUUUUGA----------------AUGAA-AGU-CAGAGUUGUGGUGACUGAAACA---------------------------------------------------GCA-AG-UAUGCUACUAGUG
>URS0000D6775E_12908_1-243
CCUA--GAGGGCUUAUCAAUUAACACCG----ACUA-------------------------------------CGGAGUACCAAGAUAAGCAAACAAAAGG-------------CUACACGUCCACUCAUAGCGUCUGAAAAGACCAUGUGAAAGUUCAAUGAACUUUUAUAUGUCCAAGGAUUUAAUGACUCUUGGCAUGAAAUACAGUGAUAAUAGUUAGUAGU-------------AAUGAAACAACCUUGGGGAAGUUUGGA-----------------GCGAA-AUC-UAAAGUUGCAGUGAUACUUA-----------------------------------------------------AUG-AG-GGGGCUACUACUA
>URS0000D65BBF_12908_1-230
CUUGAGAUGUUUUC------------------CCUGAAAAAUAUCAAUGAAA-----------------------------------GGCAACAACUUGGG-------------CUACAGGCACGAUCAU--AGUGCUUAUGUGUCAAAAACUUUUAGUUUUUGAGCACUAUCAGAAAUCACAAAGAUUUCUGAAGCCAUCAAAUACAAUAGCGAUAGCAAGUAGU-------------AAUGAAGAACCUUGGGUAAGUUUGGA------------------GCGAA-ACC-UAAAGUUAUGGUGAAUCUUG-----------------------------------------------------AUG-AU-CAUGCUACGACUG
>URS0000D6AAC7_12908_1-166
UGAAG---------------------------GAAAACAA--------------------------------------------------------CUUGGG------------CUACAUGCACAUUCAU-------------------------------------UAAGGCAUGGACAUAUUAAGUCCAAAUGCUGAUAAAAUUCAAUAACAAUAGCUAAUAAU-------------GAUGACAAGCCUUGGGGAAGUUUUGA------------------GUGAA-UAC-UAAAGUUAUGGUGAAACUUG-----------------------------------------------------AUG-AC-UGUGCUAGAUGCU
>URS0000D6C4D4_1046946_1-189
CCUA-GAAAUUAUCC-UGAUU-----------UCG---------------------------------------------AAUCAGGGAUAAUAAAGUGGG-------------CUACAUGCAUAUUCAU--------------------------------------UAAGGCAUGGAUGAUUGAAUCUAUAUGCCGAUGAAAUACAAUAACAAUAGUUAGUAGU-------------AAUGACAAGCCUUGGGGAAGUUUUGA------------------ACGAA-AAU-UAGAGUUAUGGUGAGACUUG-----------------------------------------------------AUG-AG-UGUGCUAUGCCUG
>URS0000D6A23F_12908_1-207
GUUU--AUCA-AGGAAUCUA------------UGACAACACGACCCU----------------------------------UAGGUUCCUAUGAAAGAAACAAAAGUGGG----UUACACGCAGGUUCAU---------------------------------------AGUGCAUUGACGAUUUAAGUCUAUAUGCCAUGAAAUACAAUAAUGAUAGUUAGUAAU-------------AAUGACAAACCUUGGGUAAGUUCUUCC-----------------AUGAA-UAC-UAAAAUUAUGGUGAAACUUA-----------------------------------------------------AUG-UA-UCUGCUAGAACUG
>URS0000D6AB1E_1046946_1-204
UCCUAGCUAUGUUG-CUUGG-AGGUUUUU---CCAA------------------------------------GAAAAUCUGUGAAGACAGCAUCAU--GGA-------------CUACACUCUUGUCUAU------------------------------------------AAAUUACAGCUUAUUUGAUUUGCUGUAUGAAAUUCAACAGAAAUAGAUGGUAGC-------------UAUAAAAGAUGUGUGGGAAGCUCUUUU-----------------GCGAA-UGC-UAAAUCUGUGGUGUAACUAAAUU--------------------------------------------------AUA-GA-UAAGCUAUUCUCA
>URS0000D68A2A_12908_1-205
CCAGUGAUCAUGAAUCAU--------------AAAUUCAC-------------------------------------------AU-AUUUAUGUUAACUGGA------------CUACACGCUCUUUUGC--------------------------------------UACGGCAAUUAAACUCUAAGUUUUAUUGUUAUAAAAUUCAACAACGACA-----UA-UUUACAUUUGG---AAAUAUCCUAGAAAUCUUUGAUUUCUUCGUA---CCUAAUGU--------UG--UGAAGUUGUGGUGGUCUAUUAAAA-------------------------------------------------GUA-AA-AGAGCUAUUGCAG
>URS0000D6B55B_12908_1-194
CCU--GGAGGAUUAUC----GAGUUCGUUC--CGACA----------------------------------GAAUGGAAAUUAAAGACAAGACUCGAAAGG-------------UUACACGUUCAUUCAU-------------------------------------------------AGUGCUUUGUUUUUUAGCCAUGAAAUUCAAUAAUGAUAAUUGGUAGUU------------AUGAAAAACCUUGGGGAAGUUUGG-------------------AGCGAA-GAU-UAAAGUUAUGGUGUGACUUA-----------------------------------------------------AUG-AA-UGGACUAUCUUUG
>URS0000D6BCF9_12908_1-178
CCAGG-AGU---AGCU----------------GAUA-------------------------------------------------AGCUCUUACUGCUUGGA------------CUACAAGCUCAUUUGU--------------------------------------------------AGUGCUCUUUUUAAAGCCAUAAAAUACAAAAGUGAUAGUUAGUAGCA------------AAACAUUGGAAGUCUGAAAAGAUGAAAAAU-------------GGCGAA-UAC-UAAAACUUCAGUGAGAAAAUAAAAA------------------------------------------------AUA-AA-UGGGCUAAACUUU
>URS0000D6D459_12908_1-200
UUGUCCUGAG----------------------CAGGUAAAGUACCGCACAGCUUGCGGUUGAGAAUGCC----------------------CUUAGGACGGGA-----------CUAUACGUCCUGCCAU------------------------------------CACGCCAAGAAUCUUCCUAAAGAAGUAUUGGUAUGAAAUACAGUCACAACAACUGGUAGCUCUU---------GCAA------------------------------------AGGAGUGAA-CGUCUGAAGUGACAGUGGUAGAGUCAAGG------------------------------------------------GUGUGC-AGGGCUACAACGC
>URS0000D683AB_12908_1-157
UAGGC-CUUGCGUUGCUUCUU-----------UAU---------------------------------------------GAGAAGUAAUGGAAGUGCUUGGG-----------CUACACGUCCUUUCGC-------------------------------------------UACGACAAACUAAUAUCUGUUUGUCAUAAAAUUCAAUCACGACAC---------------------CUAAUGC---------------------------------------------G-UGAAGUGGUGGUGCAUUCAACUAG-------------------------------------------------GCG-AG-AGGGCUACUGAGG
>URS0000D66BE2_12908_1-173
UCCCGAGCUGCAAC-GCC--------------AAAAAA---------------------------------------------GGUAGUUGCAGGAAGGGG-------------CUACACGCCCUGCCAU------------------------------------CACGGCAAGAGCCUGCAGCAAGCAGCAUUGCUAUGAAAUACAGCCAUGACAGCAAGUAGU-------------GAAA----------------------------------------ACGAACGUU-UGAAAUGGCAGUGAAAAGUAAACG-------------------------------------------------GUGCGC-GGGGCUACUGAGC
>URS0000D68875_12908_1-158
CCCUCGCCU-----------------------UGU---------------------------------------------------------AGGCUAGGG-------------CCACACACUCGCUUAU----------------------------------------AGUGCCAAUAAUCUUCUGAUUAUCGGCUGUGAAAUUCAGCAGUGACAGUUAGUAGU-------------UUAUUUUUU-----------------------------------GCGAA-AAU-UGAAACUGCGGUGGAACACAGAAGGCUUGA-------------------------------------------UUA-AC-UGAGCUGGAAUGU
>URS0000D6BE9B_12908_1-190
UUUAUUCCUCCGUCCUGGAAGCUC--------CUCAUCUUUUU----------------------------------GAGCAAUUGAUUUGGAGAAAUGGA-------------CUACAUGUCAAUUUAC---------------------------------------CAGUACAUUAUUUAGAUUUAUUUUAAGUCAUAAAAUUCAACUUUGACAUUAAGUAG--------------GAAA-----------------------------------------CGAA-AUA-UGAAAAGGUGGUGAAAACUUUAAGUUAAAG-------------------------------------------AUA-AA-UUGACUAUCUAUA
>URS0000D67F17_12908_1-136
UCCUGGCG------------------------UAAU---------------------------------------------------------UGUCAGGG-------------CCACACGUCUGCUCAU-------------------------------------------------CACGGCAAUCUUAGUUGUCAUUAAAUGCAACUGCAACACUUAGUAA--------------GUAA-----------------------------------------UGAA-AGGAUGAAGCGGUGGUGCUCUUGAAAG--------------------------------------------------AUGUAG-UAGGCUAGAUAAC
>URS0000D6CF58_1046946_1-159
UCUUGGUAUUAUUUAACU--------------UGAUUUGUGAU----------------------------------------AGUUAGAUAUC-UCAGGG-------------CUACACGCCUGUUUAU--------------------------------------------------CAUGGCCAUUUAAUGGUUAUAAAAUACAGCUGUGACACUUAGUAA--------------AUAU-----------------------------------------UGAA-CAGAUGAAACAGCAUUGCAAUUAAGG---------------------------------------------------AUA-AG-CAGGCUAUAUAGC
>URS0000D67C22_12908_1-149
CCUAGCCAU-----------------------UUA---------------------------------------------------------AUGGCUGGG-------------CCACAUGU-CAGUUUA--------------------------------------UUAAGACAUUAUUAAAAUUAAUUUUAAGUCAUAAAAUUCAAAAGCAAUAUUUAGUAC--------------UUAA-----------------------------------------GGAA-AUC-UAAAGCUUUGGUGUGCAAAUUAAUUUU----------------------------------------------UGC-UU-UGUACAAGCAAGA
>URS0000D681B6_12908_1-166
CUGGAGAAUUGCUC------------------UAU----------------------------------------------------GAGCAAUAAUCUAGA------------CUACAUGUAGAUUUAU----------------------------------------AGUGCAUUUUAGAUUUCUAAAAAUGCCAGUAAAAUACAGCAAAGAUAAUUAGUAGA-------------UUAU----------------------------------------UUGAA-AAU-UAAAUUUGCAGUGCAACAGAAAAUCUGUUUUA-----------------------------------------GUA-AA-UCUGCUACUUUAA
>URS0000D6AAA8_12908_1-135
CCUUGGC-------------------------GUA-----------------------------------------------------------GCCAGGG-------------CCACACGUCAGCUUAU-----------------------------------------------CACGGCAACCAAAAAGUUGUUAUAAAGUUCAACCGUGACGGUUAGUAGU-------------UUUU---------------------------------------GGCGAA-AGCACGAAACGAUGGUGAUAUUAAG----------------------------------------------------GUA-AG-UUGGCUACGUUGA
>URS0000D6715E_1046946_1-136
UCUUGGUU------------------------AAUG---------------------------------------------------------AACCAAGG-------------CCACACGUCAGUUUAC---------------------------------------------------UAAGGCAGUAAUCUGUCAUAAAAUACAACUGUAACACCCAGUAGC-------------AUCU----------------------------------------GCGAAAAAG-UGAAAUAGUGGUGAAAUAUAUAAG-------------------------------------------------GUA-AA-CUGGCUAAUGUUU
>URS0000D69B3C_12908_1-136
UCUUGGUU------------------------AAUG---------------------------------------------------------AACCAAGG-------------CCACACGUCAGUUUAC---------------------------------------------------UAAGGCAGUAAUCUGUCAUAAAAUACAGCUGUAACACCCAGUAGC-------------AUCU----------------------------------------GCGAAAAAG-UGAAAUAGUGGUGAAAUAUAUAAG-------------------------------------------------GUA-AA-CUGGCUAAUGUUU
>URS0000D6664D_12908_1-159
CCCAGCCA------------------------GUAAA--------------------------------------------------------UGGUUGGG-------------CCACAUGCCAGUUGCU-----------------------------------------------UAAUACUUUCUUAUGAAAGUUAUAAAAUUCAACUGCGACAACUGGUAAUUUUC---------GAAA------------------------------------GAGAAUGAA-CGUAUGAAGCAGUGGUGGCGCACUAACUUAGUGUAUCG---------------------------------------AGC-AA-AUGGCUACAACCG
>URS0000D6B0A5_12908_1-159
CUAGCA--------------------------UGGG-----------------------------------------------------------UGCUAGG------------CCACACGUCAGCUCAC---------------------------------------UAGUACAUUAUUUAGAUUUAUUUUAAGUCAUAAAAUUCAUUUUCGACAAUUAGUAGCGAUGAUCUUA---GAAA------------------------------AAAGG-GAUUGUGAA-CAU-UGAAGAAAAGGUGGCACAGA-----------------------------------------------------GUA-AG-CUGGCUAAAUAGU
>URS0000D6708D_12908_1-165
UUUGUAUUUC----------------------CCUGAGCAA--------------------------------------------------GAAAUAUAAAUAGGA--------CUACACGUCAAAAUAU---------------------------------------UAGCACAUUAUUAAGAUUUAUUUUAAGUCAUAAAAUUCAGUAGAAACAAUUAGUAAC-------------AAUUCUAGAAA--------------------------------UGUGAA-AUU-UGAAUCUACGGUGGCAAUUG-----------------------------------------------------AUA-UU-UUGGCUACUAGUU
>URS0000D68B65_12908_1-167
CUUGGAGUUUAUCUUUC---------------CAUGAGGAA-------------------------------------------GAAAGAUAAAGAA-AAGG------------CUACACGUCAAUUUAU---------------------------------------UAGCGCGCUAUUAAGGUUUAUUUUAAGCCAUAAAAUUCAUUUUCAAUAAUUGGUAGU-------------GAAAU---------------------------------------ACGAA-GAU-UAAAGAUUAGGUGGCAAUUG-----------------------------------------------------AUA-AA-UUGACUAAUUGGU
>URS0000D665E2_12908_1-241
UUUUCUUGAAAAUAUUGCCCAGAA--------GUAU-----------------------------------------UUCUU-GCAUGAGCAACAAGAAAAACUAAAUGGA---CUACACGUCAAUUAAU---------------------------------------UAGUACAUUAUUAAGAUUUAUUUUAAGUCAUGAAAUUCAACUUCAACAAUUAGUAGC-------------AAUGACUCGCUCGAAUGAGGA-----------------------GUGAA-AAU-UGAAGAAGUGGUGCUUCCGUAGGAGAAAUCCUUAGACUUGGAGACUCUUUUUUAAGAGAG-------------AUU-AG-UUGGCUACAAGAG
>URS0000D6C90B_12908_1-211
CCAGAGAGAUUUUCUUG---------------CAUGAGCAA-------------------------------------------CAAGAAAGUCAGA-UGGA------------CUACACGUCAAUUAAU---------------------------------------UAGUGCAUUAUUGAGAUUUAUUUUAAGCCAUAAAAUUCAACAACGACAAUUAGUAACUUU----------CUG-------------------------------------GAAAGUGAA-AAUAUGAAGUUGUGGUGCUUCCUUGAAAUUAUAUUAAUAAUUUCUUGAUUAGGAGUGAAAUG---------------GUU-AG-UUGGCUAUCUUAA
>URS0000D69217_12908_1-130
CUCUG---------------------------AAACC-----------------------------------------------------------UAGAG-------------CCACAUGUCAGUUUAU---------------------------------------------------AGAACCAUUUUGUGGGCAUAAAAUACAUCUGCGACAGAUAGUAGCA------------CAGUU--------------------------------------UGUGAA-ACU-UGAAGCAGAGGUGAUUAAAGA----------------------------------------------------AUA-AA-UUGGCUAAAAGGA
>URS0000D6CBBB_12908_1-122
UUAGGAG-------------------------UAAC----------------------------------------------------------UUUUGGA-------------CUACAUGCAGUUUCAU------------------------------------------UAGUGCAUUUUUAUUUGAUUUAAGCCAUAAAAUACAGAAGCGACU----------------------UGCG--------------------------------------------------AGAAGCUUUGGUGACUGAAAG----------------------------------------------------AUG-AA-AUUACUACAUACU
>URS0000D6711E_12908_1-161
UUUUAUUUUUCUUU------------------GGAC----------------------------------------------------AGGAAAGAUAAACUAAAAGGA-----CUACACGUCAAUUGAU-------------------------------------------------AGUGCUUUCAUAAGAAGCCAUAAAAUUCAACAGCGAUAAUUGGUAAC-------------UGAAAUAUU-----------------------------------GUGAA-UAU-UAAAGCUGUGGUGAUUUACUUUUA-------------------------------------------------AUU-AA-UUGGCUACAUGGC
>URS0000D69921_12908_1-183
UUCU-G-UCCUGGAGAA---------------UGUUAU----------------------------------------------UUUUCCUUGAGCAAGAAAAAUAAAUUAGGACUACACGUCAAUUAAU---------------------------------------UAGCACGUUAUUAAAAUUUAUUUUAAGUCAUAAAAUUCAACUUUGACAAUUAGUAGU-------------UGAAAUAUU-----------------------------------ACGAA-UUU-UGAAAAAGUGGUGGUUUACUUUUA-------------------------------------------------AUU-AA-UUGGCUACACAGG
>URS0000D6B2D3_12908_1-221
CUCAGCCAUACUC-------------------UAAC----------------------------------------------------GAGUGUUGCUGAG-------------CCACACGCCAAUUUAU---------------------------------------UAGCGCAUCAUUUAGAUUUAUUUUAAGCCAUAAAAUACAAUCGCAACAUUAAGUAAGGUUAAUUUUU---CCUUACGAGAAAAAAUUAAUUGCAAUAAAA----AAUAUUUACAACGAA-AUA-UGAAGCGACAGUGGAAGGUUCAGAAAUGAACUUUUUGAAAUG-------------------------------AUA-AA-CUGGCUAUAUCUU
>URS0000D67BBF_12908_1-206
CCUGGCC-------------------------AUUAGA--------------------------------------------------------GGCUGGG-------------CCACAUGUCAAUUUAU---------------------------------------UUGCACAUAUUUAAGUUUAUUUUAAGUCAGUAAAAUUCAACUUUGACAAUUAGUAAAGGGUUUCUUUUUUAGAAAAAAAGAAACUACUGUGGUAGA-----AAAAACUACAAUUGUGAA-AAU-UGAAAAAGUGGUGGCAGAUAAAAAUCUGAUAAUCG--------------------------------------GUA-AA-UUGGCUAAUCCCA
>URS0000D66135_12908_1-185
CCUGGCU-------------------------GAAA----------------------------------------------------------AGCUAGG-------------CCACAAGCUCUUUUAU------------------------------------------------UAGUGCCUUUUAAUAGGCUAGUAAAAUACAACUUUGAUAAUUAGUAGU-------------GAAA----------------------------------------AUGAA-ACU-UAAAAAAGUGGUGGCGAGGUUAUUGGAAAUGAUAAAUUCAUUUAAUAAACAAUUUCAAUAACUGAGAUAAUUGGUA-AA-AGAGCUAUUUCCA
>URS0000D68CBE_12908_1-135
CCUAGCU-------------------------UGG-----------------------------------------------------------AGCUAGG-------------CCACACGCCUCUUUAU------------------------------------------------UAGAACUCUUAAGUGAGUCAGUAAAAUUCAAUGGCGACAACUAGUAGUU------------GAAA-------------------------------------AUUAUGAA-CCU-UGAAGUCAUGGUGGCAAUCG-----------------------------------------------------GUA-AA-GAGACUAUCACUA
>URS0000D687B0_12908_1-167
CCUUUUUUC-UAAUAAUUUGUCUU--------AGG------------------------------------------GAGGCACUCUCCAAUGAACUAAGG-------------CUACAUGUCUGUUAAU-------------------------------------------------AGUGCUUUUUAAAAAAGCCAUAAAAUUCAAAAGUGACAAAUAGUAAU-------------GAAA----------------------------------------AUGAA-ACU-UGAAACUUUGGUGAUUUACUUUAA-------------------------------------------------AUU-AA-UAGACUACAUGUC
>URS0000D6C21F_12908_1-171
UCCUGAAGAUUUUUAUAUCUC-----------CUUGAGCAA---------------------------------------GAGAUAUAGAA-----UAGGA-------------CUACACGUCAAUUUAC---------------------------------------UAGCACAUUAUUUAGGUUUAUUUUAAGUCAUGAAAUUCAACUUUGACA----------------------GAAA--------------------------------------------------UGGAUAGGUGGUGAAAGAAAAUCUUUAGGAUUUUCAAAA----------------------------------GUA-AG-UUGGCUAUUUUAG
>URS0000D68575_12908_1-167
UCCUGGAGAGUUUUAUGUUUC-----------CCUGAGCAA---------------------------------------GAAACGUGAAAU-----AGGA-------------CUACACGCCAAUUUAC---------------------------------------UAGCACAUCAUUUAGAUUUAUUUUAAGUCAUAAAAUUCAGCUUUGACA----------------------AAAU--------------------------------------------------UGGAAAAGCGGUGAAAGAAAAUUAAAUUUUCAAAA--------------------------------------GUA-AA-UUGGCUAUCUUAG
>URS0000D6B44F_12908_1-196
CCUAGCUAUACUUUA-AAAUUAAUUC------CUCUU--------------------------------------GUUUUAAUUUAUAAAGUAUU-CUGGG-------------CCACACGCCAAUUUAU---------------------------------------UAAUAUAUCAUUUAGAUUUAUUUUAAGUUAUAAAAUACAACUGCAACAUUAAGUAAC-------------UUUC----------------------------------------GUGAA-AUA-UGAAGUGGUGGUGAAGGGUCUCUUGACUUUUUGAAAUG-----------------------------------AUA-AA-UUGGCUAUCUCUU
>URS0000D6C409_12908_1-139
CCUGGCUAUA----------------------CUAUAA-----------------------------------------------------UAUAGCUGGG-------------CUACAAGCCAAUUGCU------------------------------------------------------UAAGGAUAAAAUCCAUAAAAUACAACUGCGACAUUAAGUAAC-------------CUUAAAAA------------------------------------GUGAA-AUA-UGAAGUAGUGGUGACAUGAAA----------------------------------------------------AGU-AA-AUGGCUAGGCCUU
>URS0000D66FB1_12908_1-154
UCUUGGU-------------------------AUGAAA--------------------------------------------------------ACCAAGG-------------CUACAAGUUAGAUAUU-----------------------------------------------------AAGCUUCCAAUAGCGAUAAAAUUCAAUCACAACAUAUAGUAAU-------------GAUGAAGGAACCAAAAGUGAGCUGA-------------------GUGAA-AUA-UGAAGUGAUGGUGAUUUACUUUCA-------------------------------------------------UUU-AU-CUGACUAGUUGAG
>URS0000D6B07E_12908_1-156
UCUUAGUUUGAC--------------------CAUG-----------------------------------------------------GUUUAGCUAGGG-------------CCACACGCCUUUUGCU------------------------------------------------------UAUGCUCCUAGGGCGUCAAAUGCAAACACGACAUUAAGUAAAA------------AUUAGCUAUUAAGCAA----------------------A----UUUGAA-AUA-UGAAGUGUUGGUGGUUUUACUUUCA------------------------------------------------AGC-AG-AAGGCUACAUAGU
>URS0000D69FDF_12908_1-194
UCUUAGUUUGGC--------------------GUUUAU---------------------------------------------------GCCUUGCUAGGG-------------CCACACGCAUCUUGCU------------------------UAUGCCUGAAACCAAGAAAAUCCUGAAGGAUUUUGGAGAAAGGUAUCAAAUGCAAAAGCAACAUUAAGUACU-------------AAUGAGGGAACCGAAAGUGAGCUGA-------------------AGGAA-AUA-UGAAGCUUUGGUGAUUUUACUUUAG------------------------------------------------AGU-AG-GAUGCUACAUAGU
>URS0000D67D93_12908_1-134
UCCUGACUAUGCU-------------------UAAC----------------------------------------------------AGCAGAGUU-GGA-------------CUACACGUCAAUUCAC-----------------------------------------UAGUACAUUAAUAAUAUAAUUAAUGUCAUAAAAUACAGAAGUUUCU----------------------UGCG--------------------------------------------------AGAAACUUCAGUGAAGAUAAG----------------------------------------------------GUA-AA-UUGGCUAUAGUUU
>URS0000D6871B_12908_1-134
CCUAACCAU-----------------------UUG---------------------------------------------------------AUGGUUGGG-------------CCACACGUCAGUUUAU------------------------------------------UUAUCUAAGUUUAAGAUGAUUUAAAC-UAGAAUGCAAAAAUUUCU----------------------UACG--------------------------------------------------AGAAAUUUUGGUGAAGUCUUUGACU------------------------------------------GAAUUGGUA-UA-CUGGCUAAAAAUU
>URS0000D6ADF9_1046946_1-175
UCUAA-AGUUAUGUC-CUGA--CUAUA-----UAGA--------------------------------------UAUACUAUCAGUGAAGUAUAAGUUGGA-------------CUACAUGCCAGUUUAC----------------------------------------UAGUACAUCAUUAAUUUGAUUUUAAGUCAUGAAAUACAGAAGCAACA----------------------UUCG--------------------------------------------------UGAAGCUUCAGUGGCAAGAGUUAAUCUUUUGUGAUG-------------------------------------GUA-UU-CUGGCUAUAAGUU
>URS0000D69AEC_12908_1-177
CCUGGCCAU-----------------------GUUAAA------------------------------------------------------AUGGUUAGG-------------CCACACGCCUAUUAAU---------------------------------------------------UAUAUCUCAAAGGAGAUAUAAAAUACAACUAUAACAUUAAGUAUUUUAAAGGAAG---GUUGAACUUCAAGGAAACGUAG------------UUGCCUUACGAAGAA-AUA-UGAAAUAGUGGUGAUUUACUUUCA-------------------------------------------------AUU-AA-UGGGCUACAUCUU
>URS0000D67474_12908_1-148
UCUUAGU-UAGCAUA-----------------GUAA--------------------------------------------------UAUGCUUUGCUAGGG-------------CUACACGCCUAUUAAU----------------------------------------------------UAUAUCUCUUUGAGAUAUUAAAUUCAAUUAAAACAUUAAGUAAGC------------AAU----------------------------------------GCUGAA-AUA-UGAAUUAAUGGUGAUUUACUUUAA-------------------------------------------------GUU-AA-AAGGCUACAUAAC
>URS0000D6D008_12908_1-163
CCUAGCCA------------------------GAAA---------------------------------------------------------UGGCUGGG-------------CCACACGCCAGUUAAU--------------------------------------------AGUGUUUGUUAAUUUUAACAAACUAUGAAAUGCAAAUGUGACAUUUAGUAGU-------------GAUGAAGGAACUGAAAGUGAGCUGA-------------------GCGAA-AUA-UGAAGCCUUGGUGAUUUACUUUUA-------------------------------------------------AUU-AA-UUGGCUACAAAUU
>URS0000D6CFF4_12908_1-147
GUCUUAGUUAGC--------------------UUAAU----------------------------------------------------GCUAUACUAGGG-------------CUACAUGCUCAUUGAU--------------------------------------------------AGUGCUUUAAACUAAGCCAUAAAAUUCAACCACAACAUUUAGUAAGU------------UUAA---------------------------------------ACUGAA-AAG-UGAAGUGAUGGUGAUUUACUUUCA-------------------------------------------------AUU-AA-UGAGCUACAUAAC
>URS0000D6C8E6_12908_1-149
UCUUAGUU-AGC--------------------AAUAAUA--------------------------------------------------GCUAAACUAGGG-------------CUACAUGCUUAUUAAU------------------------------------------------AGCGCUUUCUAAAGAAAGCCAUAAAAUUCAAUCAUGACAUUAAGUACU-------------CUAGUU--------------------------------------AGGAA-AUA-UGAAAUGAUGGUGUUUAUUUUUA--------------------------------------------------AUU-AA-UGAGCUACAUAUC
>URS0000D681D3_12908_1-122
CCUAACC-------------------------UUGGGACU------------------------------------------------------GGUUAGG-------------CUACACGUUGAUUAAU--------------------------------------------------------------------UUCCAAUUCAAUCACAACAAUUAGUAAUU------------UCGC---------------------------------------AAUGAA-CUU-UGAAGUGAUGGUGAUUUACUUUCA-------------------------------------------------AUU-AA-UCAACUAUUUAUC
>URS0000D6CB9B_12908_1-151
CCUGGUCUUGCU--------------------UAU------------------------------------------------------AGUAUGACUGGG-------------CCACACGCUUAUUAAU--------------------------------------------------AGCACUCUUAAUUGAGUCAUGAAAUUCAAUCACAACAUUUAGUAAU-------------UAUUAUAUGAAU--------------------------------GUGAA-AAA-UGAAGUGAUGAUGAUUUAUUUUUA-------------------------------------------------AUU-AA-UGGGCUAUAUAUU
>URS0000D6AC8A_12908_1-160
CCUAGUCUUUAC--------------------CUAUAGA--------------------------------------------------GU-AAGACUGGG-------------CCACAAGCCAAUUAAU--------------------------------------------AGUGCCUUUAAAUUUUUAGAAGUCAUAAAAUUCAAUUACAACAAUUAGUAGU-------------UAUGAUAUGAAU--------------------------------GUGAA-AAU-UGAAGUAGUGGUGAUUUACUUUUA-------------------------------------------------AUU-AA-UUGGCUAAUGCCU
>URS0000D6B27B_12908_1-139
CCUAGU--------------------------CUUUA----------------------------------------------------------ACUAGG-------------CCACAAGCUAAUUAAU----------------------------------------------AGUAUUUGUUUUAAAACAAAUCAUAAAAUUCAACCACAACAAUUAGUAGG-------------CUAGUU--------------------------------------CUGAA-UCU-UGAAGUGGUGGUGAUUUACUUUUA-------------------------------------------------AUU-AA-UUAGCUAUAACCA
>URS0000D68221_12908_1-178
CCUAGCUAUACUUGU-----------------UUAAU-------------------------------------------------ACAAGU-UA-CUAGG-------------UCACAAGUCAGUUUAU---------------------------------------UAGCACAUUAUUAAGGUUUAUUUUAAGUCAUAAAAUUCAACCACAACAAUUAGUAGCG------------AUGAUUUGCUUAAAAGGGGUG----------------------UGUGAA-ACU-UGAAGUGGUGGUGGUAAUAAUUG--------------------------------------------------AUA-AA-UUGGCUACUUUUA
>URS0000D67FE5_12908_1-147
UCCUGA-CUAUGC-------------------UAU-----------------------------------------------------GCGUAGAUUAGGG-------------CUACACGUCAAUUUAU---------------------------------------CAGCACAUUGUUGAUUUUCAUUUUAAGUCAUAAAAUACAAAAGCGACA----------------------UCCG--------------------------------------------------UGAAGCUUUGGUGCAGGACUAUCCUGGUAAUAG----------------------------------------GUA-AA-UUGGCUAUAAGCA
>URS0000D6B201_12908_1-121
UCUGG---------------------------UAGC------------------------------------------------------------CCAGAA------------CUACAAGCCAGAUUAC---------------------------------------CAGCACAUUAUUUAGGUUUAUUUUAAGUCAUAAAA-ACAGAAGCCUCA----------------------UUCG--------------------------------------------------UGAUGCUUCGGUGAAUUGAAU----------------------------------------------------GUA-AA-AUGGCUACUUUGC
>URS0000D6C99C_12908_1-159
CUUAGUGAGAGGUA------------------AGA----------------------------------------------------UGCCUUAAACUAUGG------------CUACACGUCAGUUUAU---------------------------------------UAGCACAUUAUUUAGAUUUAUUUUAAGUUAUAAAAUACAGAAGUUUCU----------------------UGCG--------------------------------------------------AGGAAUUUCAGUGAAGAAAUUCGUUAUGAAUUUCCCAAUUG--------------------------------GUA-AA-UUGGCUACAUAAC
>URS0000D6BF4B_12908_1-175
CUUGGUUCUUUAUUUAU-UUUUGU--------CCUGAA---------------------------------------GCACUAUAUAGAAU-AGAAACAGGA------------CUACAUGCCAAUUUAU---------------------------------------UAGCACAUUAUUUAAGUUUAAUUUAAGUCAUAAAAUACAGAAAUUUCU----------------------UACG--------------------------------------------------AGAAAUUUCGGUGAUAGAAUUAAAAAUUCUUAAUUG-------------------------------------AUA-AA-UUGACUAUAUAAU
>URS0000D65C12_12908_1-145
CCUAACC-------------------------AUAU----------------------------------------------------------GGUUAGG-------------CCACACGUCAGUUUAU---------------------------------------UACGACUUUAUUUAGAUUUAUUUUAAGUCAUAAAAUACAGAAAAUUCU----------------------UACG--------------------------------------------------AGAAUUUUCAGUGAACAGAAUCUA--------------------------------GGAGAUUCUGCGAAUUGAUA-AA-UUGGCUACAACGU
>URS0000D67486_12908_1-172
CCUAACC-------------------------AUUU----------------------------------------------------------GGUUAGG-------------CCACACGUCAAUUUAU---------------------------------------UAAGGCAUUAUUAAAAUUUAUUUUAAGCUAUAAAAUUCAAAAAUUCCU----------------------UGCG--------------------------------------------------AGGAAUUUUGGUGUGCAGGUAAAUCCUGCUUUGUGCAAGCAAGAUUCUUGACAUGAGGUAAUCAUGAG-----AUA-AA-UUGGCUAUAAGUU
>URS0000D6D016_12908_1-145
UCUUAACU------------------------AAUGAUCUGG---------------------------------------------------AGUU-GGA-------------CUACACGUUAAUUUAU----------------------------------------UAGCACAUUGUUUAGUUUAUUUUAAGUCAUAAAAUACAGAAAUUCCU----------------------UGCG--------------------------------------------------AGGAAUUUCAGUGAAGGAACUUUGUUCCCCAAUUG--------------------------------------AUA-AA-UUAGCUAUAAGUA
>URS0000D6A944_12908_1-152
UCCUGACU--CUCU------------------AAAU---------------------------------------------------AGAGUAAGUUAGGG-------------CUACACGCCAGUUUAU---------------------------------------UAGCACUUUAUUUAAAUUUAUUUUAAGUCGUGAAAUACAGAAAUUUCU----------------------UACG--------------------------------------------------AGGAAUUUCCGUGAAAAGAAUUUGCUCUCUUAAUUG-------------------------------------AUA-AA-UUGGCUAUAAGCA
>URS0000D67353_12908_1-153
UCCAGGCAA-----------------------GAACA-------------------------------------------------------UUGUCUGGG-------------CCACACGUCUUCCAAU----------------------------------------CUGAACGCAUUCAUUAUUUAGCGUUCGGGUGCAAUACAGCCGCAACACUGAGUAGCGU-----------GAUA--------------------------------------GCGUGAAAUCG-UGAAGCGGCAGUGGUUUAUUUCG--------------------------------------------------GUU-GG-AAGACUACCCGGU
>URS0000D6CBD0_12908_1-186
UUUUAUACUUCUUUCUUUUU------------GUAUUUACUGUCCCA----------------------------------GCUGCGAAAGUGGCUUGGAA-------------CUACACGCUCUUUCAC-------------------------------------------------GAAGACAACCAAAGUUGUCAUAAAAUACAGCUUCAACUUGA----UGCA-CAAAUGUGA-UGGUCU--------------------------UUACAUUUCUUGCA-------CUGAAGGGGCAGUGAAUUCGUAA---------------------------------------------------GUG-GA-AGGGCUACUCAGG
>URS0000D664E7_12908_1-126
GUCCCAGCUUA---------------------AAAA------------------------------------------------------UAAGCUUGGAU-------------CUACAUGCCCUUUCAC--------------------------------------------------CAAGGUAGCUAAGCUAUCAUAAAAUACAGCUCCAACA----------------------GCAA--------------------------------------------------UGAAGGUGCAGUGAAUUUAAUAAAA------------------------------------------------GUG-AA-AGAGCUACUGGUU
>URS0000D661A2_12908_1-151
GUCCCAGCUUA----AUGUUUUAUCU------AAAA---------------------------------------AGAUAAAGCAAAAAAUAAGUUUGGAU-------------CUACAUGCGCUUUCAC--------------------------------------------------UACGGGAGCAUCGCUCUCAUAAAAUACAGCCUCAACA----------------------GCAA--------------------------------------------------UGAAGGGGCAGUGAAUAUUAUUAA-------------------------------------------------GUG-AA-AGAGCUACUGGUU
>URS0000D65820_12908_1-174
UUCUUUAAUGAGC---CUUACCAUCAUUUCUUUUCA---------------------------------AAGGAUUU-UGGUAAACAUGCUU-----GGAAG------------UUACACGCUCUUUCAC-------------------------------------------UACGACUUUAUUUAUUUAUGAAGUUAUAAAAUACAGCUUCGACU----------------------UGAUGCUUAGCAC-----------------------------------------UGAAGAAGCAGUGAUAAUAAAAA--------------------------------------------------GUG-AA-AGAGCUAUUGAGG
>URS0000D6A450_12908_1-154
UCUUGAU-UUACACUGCA--------------GUU------------------------------------------------UGCAGUGUUUUAUCUGGG-------------CUACACGCUUUUUUAC------------------------------------UAGUGCAGUGUAAUGCUUUCAAGCAACCUGUCUUAAAAUACAACUGCAACAC---------------------CUAAUAU---------------------------------------------G-UGAAGCAGUGGUGAUUAAUUAA---------------------------------------------------GUA-AA-AAAGCUACAGGGU
>URS0000D698A3_12908_1-202
CCUAGCUUAUUGU---UUAGAGGUCUGUCU--CCCA-----------------------------------AGACAGACUAAUGAAGGGCAGUAACUUGGG-------------CUACACGCUUACCCAU------------------------------------------------AAUGUAGCAAAAGUGCUACAAUAAAAUACAAUGGCGAUAGUUAGUAGC-------------UAUAAAAGGUGUGUGGGAAGCCCUUUC-----------------GCGAA-UAU-UGGAGCCAUGGUGGAUAAAUAAUU-------------------------------------------------AUG-GA-UAAGCUAGCCGGU
>URS0000D69944_12908_1-159
UCCUAGCUUUUCC-----UUAUGUGGUU----UUCAUUUUU--------------------------------GAUCAUGUAAGAAAUGGAGUAGCUUGGAA------------CUACACGUCCUUUCAC-------------------------------------------------UAUGAGAACUUUUGUUCCUAUAAAAUACAACCAUGACA----------------------GAAA--------------------------------------------------UGAACUGGUGGUGAAAAUACAU---------------------------------------------------GUG-AA-AGGGCUAUAGCGG
>URS0000D67C2E_12908_1-147
UCUCAGCUGCUUCAUU----------------UAUGAAGC---------------------------------------------AAUGAAGUAGCUUGGAA------------CUACACGUCAUUUCAC--------------------------------------------------UAUGACAGUAUAACUGUUAUAAAAUACAAUCACAACAC---------------------CUAUUGC---------------------------------------------G-UGAAGUGGUGGUGGUCUUUCAAGAAG-----------------------------------------------GUG-AA-AUGGCUACUUAUG
>URS0000D6D131_12908_1-139
CCUAG-CU-AACUGCACA--------------ACAAGGA--------------------------------------------UGUGUGGGGCAGACUAGG-------------CUACACGUCCUUUCAC---------------------------------------------------UAGGGCAAGAAAUUGCUAUAAACAACAACUACAACA----------------------GAAA--------------------------------------------------UGAAGUAGCGGUGAUUAGAAUACA-------------------------------------------------GUG-AA-AGGGCUACUCUUG
>URS0000D6CFE9_12908_1-147
CCAAGUUG-CUUAUCUCUGAGU----------AGAGUA-----------------------------------------AGUUGGAGA--AGUUAGCUUGGA------------CUACAUGCCCUUUCAC--------------------------------------------------UAUGGCAACCUAGUUGCUAUUAAAUACAACCAUGACA----------------------GAAA--------------------------------------------------UGAAUUGGCGGUGAAUUAAUUAAA-------------------------------------------------GUG-AA-AGAGCUACUCUUG
>URS0000D6D363_12908_1-201
CUAGCAUAUU--GUUUGG-AGAAUUAUUCU--CCU------------------------------------AGAAUAAUUUGAUGAAGCGUAAUAU-CUGGGG-----------UUACACGCUUAUUUGU--------------------------------------------------AAUGCAACAAAAGUUGUUAUAAAAUACAACAGCAAUAGUUGGUAGCUAUAAAAGG----CGUGUGGGAAGC-----------------------CCUUUC---GCGAA-UAC-UAAAGUUGUGGUGACAAAAAAAAUU------------------------------------------------AUU-AG-UAAGCUAACUUUG
>URS0000D68D87_12908_1-199
CUAGCGUAUUAUUU---GGAAGGUUUCUCU--ACCC-----------------------------------AGAGAAAACUAAUGAAGGAUGGUAC-CUGGA------------CUACACGCUUAUCCAU---------------------------------------------------AAUACAGCUUUGCUGUAAUAAAAUACAAUAGCAAUAAUUAGUAACGCUAAAAGGUGU-GUGGGAA-------------------------GC-CCUUU---UGUGAA-AAU-UAGAGUUAUGGUGGAUAAAUAAUU-------------------------------------------------AUG-GG-UAAGCUAGCUGGU
>URS0000D69D00_12908_1-198
CUAGCAUAUUAUUU---GGAGAAUUAUUUU--CCU------------------------------------AAAAUAUUUUUAUGAAAAAUAGUAUCUUGGG------------CUACACGCUUAUACAU---------------------------------------------------AAUGCAACGUUAUUGCUAUAAAAUACAACAGCGAUAGUCAGUAGCUAUAAAAGGUGU-GUGGGAA-------------------------AC-CCUUU---CGCGAA-UAC-UAAAGUUGUGGUGAAGAAAAAUU--------------------------------------------------GUG-GA-UAAGCUAGCUGGU
>URS0000D67862_12908_1-132
CCUAGCUAUCCGUUG-----------------UUU---------------------------------------------------CAAUG-UGAGCUAGG-------------UUAUACGCUCCCUUAU--------------------------------------------------GACGGCAAUAUAAUUGUCAUAAAAUACAACUACGACA----------------------GCAA--------------------------------------------------UGAAGUAGUGGUGGGUUAACUUUAA------------------------------------------------GUA-GA-GGAGCUAUGCUCU
>URS0000D6C118_12908_1-155
UUAGUUUCUU--UUAUGUCCUGGC--------AACC-----------------------------------------GAAAGGAAACUUUUGAGAAGCUGGG------------UUAUACGCUCUUUUAC--------------------------------------------------GAGGGCAACUUAGUUGUCAUAAAAUACAACCAUAACCC---------------------CUAAUGU---------------------------------------------G-UGAAAUGGUGGUGAGAACCAAUAA-------------------------------------------------GUG-AA-AGAGCUAUGCUCU
>URS0000D6B98D_12908_1-137
CCUGGCAAC-CGUAG-----------------GUGA--------------------------------------------------CUAUGAGAAGCUGGG-------------UUAUACGCACUUCCAC-------------------------------------------------GAUAGACAACUAUGUUGUCAUAAAAUACAGCCAUGACAC---------------------CCAAUGU---------------------------------------------G-UGAAAUGGUGGUGAAGAAAAUAA--------------------------------------------------GUG-GA-AGAGCUAUGCUUU
>URS0000D68A1A_12908_1-134
CCUGGCAAC-CGUG------------------GAAA---------------------------------------------------CAUGAGAAGCUGGG-------------UUAUACGCUCUUUUAC--------------------------------------------------GAGGGCAACAAUGUUGUCAUAAAAUACAACCAAGACAC---------------------CUAAUGU---------------------------------------------G-UGAAUUGGUGGUGCACAUAAUAA--------------------------------------------------GUG-AA-AGAGCUAUGCUCU
>URS0000D68015_12908_1-148
UCC--UAGCUC-GUGCAUUC------------CAAUUGUU-----------------------------------------GAAUGCAAAGAGUAGCUGGAA------------CUACACGCCUUUCCGC---------------------------------------------------UAUGGCAGCUUGCUGCUAUAAAAUGCACCCAUGACAG---------------------CUAAUGC---------------------------------------------C-UGAAAUGGUGGUGAAAACAGAAA--------------------------------------------------GUG-GA-AUGGCUACUUAGG
>URS0000D65AFA_12908_1-143
UCCCAGCUA-------AUUCCA----------GCAA-------------------------------------------UGGAAUUAUAGAAUGGCUUGGAA------------CUACACGCUCUACUGC---------------------------------------------------UAUGGCAACUUGUUGCUAUAAAAUUCAACCACAACAG---------------------CUAACGC---------------------------------------------C-UGAAGUGGUGGUGACGUAAAAA---------------------------------------------------GUG-GU-AGGGCUACUUGGA
>URS0000D6B10A_12908_1-134
CCUAGU-AAC--CGUU----------------UUU--------------------------------------------------AACGAAGUAAGCUAGG-------------CUAUACGCUUAUUUGC---------------------------------------------------UAUGGGAGCUUGCUCUUAUAAAAUACAAUCACAACAC---------------------CUAAUGU---------------------------------------------G-UGAAGUGAUGGUGAAAACAAGAA--------------------------------------------------GUA-AA-UAGGCUAACUUGG
>URS0000D6B26B_12908_1-134
CCUAGU-AAC--CGU-----------------UUUU--------------------------------------------------ACGAAGUAAGCUAGG-------------UUACACGCUUAUUUAC--------------------------------------------------UAUGGGAGCCCAGCUCUUAUAAAAUACAGUCACGACA----------------------UCUAAUGUG---------------------------------------------UGAAGUGGUGGUGAUAACAAGAA--------------------------------------------------GUA-AA-UAAGCUAACUUGG
>URS0000D698DF_12908_1-132
CUAGCAAAC--CGU------------------UUUU---------------------------------------------------ACGAAGUCAGCUAG-------------UUAUACGCUUAUUUAC---------------------------------------------------UAUGGGAGUUUACUCUUAUAAAAUGCAAUCACGACAC---------------------CUAAUGU---------------------------------------------G-UGAAGUGGUGGUGAAAACAAGAA--------------------------------------------------GUA-AA-UAAGCUAACUUGG
>URS0000D6A4DE_12908_1-155
UUCUAGC-CUUGCGAUAUUCUUU---------GAAA------------------------------------------AGAGAAUAUGGUGAGUGCUUGGG-------------CUACAUGCUCUCUUGC------------------------------------------UAGGGUUGUGUUGUUAGAAUGCAAUCAUAAAAUACAACUGCGACA----------------------UGCG--------------------------------------------------UGAAGUGGUGGUGAUAUAACAAA--------------------------------------------------GUA-AG-AGAGCUACUGAGG
>URS0000D673E6_12908_1-169
UUGAGC-CUU-GCCAUCGUUCCU---------CUACAA----------------------------------------AGGAUUU-UGGAGAAGUGCUUGGGAG----------UUACACGCUUUUUCAC---------------------------------------UACGGUUUUAUUCUAAUCAGAAUGAAAUCAUAAAAUACAGCUCCGACU----------------------UGAUGCUUCGCAC-----------------------------------------UGAAGGGGCAGUGAAUUCAUGA---------------------------------------------------GUG-AA-AAGGCUAAUUGCG
There are no chains in PDB that we map to Rfam family RF03019.
Jump to results for:
- Loop 1HL Column numbers: 21-81
- Loop 2IL Column numbers: 125-126, 372-374
- Loop 3IL Column numbers: 127-128, 369-371
- Loop 4IL Column numbers: 130-170, 318-367
- Loop 5IL Column numbers: 170-178, 306-318
- Loop 6IL Column numbers: 180-209, 302-304
- Loop 7IL Column numbers: 213-216, 295-298
- Loop 8IL Column numbers: 217-218, 292-294
- Loop 9IL Column numbers: 219-225, 285-291
- Loop 10HL Column numbers: 227-283
Loop 1 Hairpin loop
Column numbers: 21-81
Scored sequences and counts
------------GAAA--------------------------------------------- 4
------------UAAC--------------------------------------------- 3
------------UAU---------------------------------------------- 3
------------UUAAU-------------------------------------------- 2
------------AAUG--------------------------------------------- 2
------------UUUU--------------------------------------------- 2
------------UUU---------------------------------------------- 2
------------CAGGUAAAGUACCGCACAGCUUGCGGUUGAGAAUGCC------------ 1
CCAUCAUUUCUUUUCA---------------------------------AAGGAUUU-UGG 1
AUGUGGUU----UUCAUUUUU--------------------------------GAUCAUGU 1
GAGUUCGUUC--CGACA----------------------------------GAAUGGAAAU 1
AGGUCUGUCU--CCCA-----------------------------------AGACAGACUA 1
AGGUUUCUCU--ACCC-----------------------------------AGAGAAAACU 1
GAAUUAUUCU--CCU------------------------------------AGAAUAAUUU 1
GAAUUAUUUU--CCU------------------------------------AAAAUAUUUU 1
UCUAUUUC----CCAAUA-----------------------------------GACGUUGA 1
-AGGUUUUU---CCAA------------------------------------GAAAAUCUG 1
------------CCUGAAAAAUAUCAAUGAAA----------------------------- 1
AAACUUAU----CCCA-------------------------------------AUAAGUCA 1
UAACACCG----ACUA-------------------------------------CGGAGUAC 1
UUUUCAG-----UUCUUU------------------------------------CUUAACC 1
GCUC--------CUCAUCUUUUU----------------------------------GAGC 1
G-CUGCA-----UAACC-------------------------------------UGCAACC 1
UAAUUC------CUCUU--------------------------------------GUUUUA 1
--CUAUA-----UAGA--------------------------------------UAUACUA 1
UUAUCU------AAAA---------------------------------------AGAUAA 1
------------GUAUUUACUGUCCCA---------------------------------- 1
------------UGACAACACGACCCU---------------------------------- 1
UUGU--------CCUGAA---------------------------------------GCAC 1
------------CCAUAUUAAAAA------------------------------------- 1
AGAA--------GUAU-----------------------------------------UUCU 1
CCU---------CUACAA----------------------------------------AGG 1
UGGC--------AACC-----------------------------------------GAAA 1
------------AGAAGUAAUGA-------------------------------------- 1
------------UGAUUUGUGAU-------------------------------------- 1
C-----------CCUGAGCAA---------------------------------------G 1
C-----------CUUGAGCAA---------------------------------------G 1
UCUU--------AGG------------------------------------------GAGG 1
------------AAUGAUCUGG--------------------------------------- 1
GU----------AGAGUA-----------------------------------------AG 1
GUA---------AAAU------------------------------------------UAC 1
UUU---------GAAA------------------------------------------AGA 1
------------CAUGAGCAA---------------------------------------- 1
------------CAUGAGGAA---------------------------------------- 1
------------CCUGAGCAA---------------------------------------- 1
------------AAAUUCAC----------------------------------------- 1
------------CAAUUGUU----------------------------------------- 1
------------GAAAACAA----------------------------------------- 1
------------UAUGAAGC----------------------------------------- 1
------------UUGGGACU----------------------------------------- 1
CA----------GCAA-------------------------------------------UG 1
------------AAUAAUA------------------------------------------ 1
------------ACAAGGA------------------------------------------ 1
------------CUAUAGA------------------------------------------ 1
------------AAAAAA------------------------------------------- 1
------------AUGAAA------------------------------------------- 1
------------AUUAGA------------------------------------------- 1
------------CUAUAA------------------------------------------- 1
------------GCGGAA------------------------------------------- 1
------------GUUAAA------------------------------------------- 1
------------GUUUAU------------------------------------------- 1
------------UGUUAU------------------------------------------- 1
------------AAACC-------------------------------------------- 1
------------CUUUA-------------------------------------------- 1
------------GAACA-------------------------------------------- 1
------------GUAAA-------------------------------------------- 1
------------UUAAA-------------------------------------------- 1
U-----------UAU---------------------------------------------G 1
U-----------UCG---------------------------------------------A 1
------------AAAA--------------------------------------------- 1
------------AAAU--------------------------------------------- 1
------------AUAU--------------------------------------------- 1
------------AUUU--------------------------------------------- 1
------------CAUG--------------------------------------------- 1
------------CUAG--------------------------------------------- 1
------------GAUA--------------------------------------------- 1
------------GCAA--------------------------------------------- 1
------------GGAA--------------------------------------------- 1
------------GGAC--------------------------------------------- 1
------------GUAA--------------------------------------------- 1
------------GUGA--------------------------------------------- 1
------------UAAG--------------------------------------------- 1
------------UAAU--------------------------------------------- 1
------------UAGC--------------------------------------------- 1
------------UGGG--------------------------------------------- 1
------------AGA---------------------------------------------- 1
------------AUA---------------------------------------------- 1
------------GUA---------------------------------------------- 1
------------GUU---------------------------------------------- 1
------------UGG---------------------------------------------- 1
------------UGU---------------------------------------------- 1
------------UUA---------------------------------------------- 1
------------UUG---------------------------------------------- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_70782.2
Basepair signature:
|
22.12 | -2778.30 | 4 | 3 |
|
| 2 |
Motif group HL_56334.1
Basepair signature:
|
21.15 | -3285.12 | 3 | 3 |
Mini UNCG |
| 3 |
Motif group HL_48778.2
Basepair signature:
|
20.19 | -2808.95 | 3 | 3 |
Mini UNCG |
| 4 |
Motif group HL_32346.4
Basepair signature:
|
18.27 | -3297.41 | 3 | 3 |
|
| 5 |
Motif group HL_53890.2
Basepair signature:
|
14.42 | -1918.41 | 3 | 2 |
|
| 6 |
Motif group HL_13189.1
Basepair signature:
|
14.42 | -2403.42 | 4 | 4 |
|
| 7 |
Motif group HL_75660.5
Basepair signature:
|
14.42 | -4117.48 | 3 | 2.5 |
|
| 8 |
Motif group HL_37824.7
Basepair signature:
|
13.46 | -1691.03 | 3 | 2 |
GNRA |
| 9 |
Motif group HL_04783.2
Basepair signature:
|
12.50 | -1704.68 | 3 | 3 |
|
| 10 |
Motif group HL_78677.1
Basepair signature:
|
11.54 | -3703.99 | 4 | 4 |
|
Loop 2 Internal loop
Column numbers: 125-126, 372-374
Scored sequences and counts
AU*A-U 27
UU*A-A 18
GU*A-U 10
AU*G-U 7
GU*A-C 4
AU*A-A 3
GA*U-C 3
UU*G-A 3
CC*G-G 2
CU*A-G 2
GC*G-C 2
GC*G-U 2
UC*G-A 2
UG*C-A 2
AC*GCA 1
GU*AUC 1
AA*U-U 1
AC*A-U 1
AC*G-G 1
AG*U-U 1
AU*A-C 1
AU*C-U 1
CC*A-G 1
CU*G-G 1
GA*A-A 1
GC*C-U 1
GU*A-A 1
GU*G-C 1
GU*U-C 1
UA*U-A 1
UG*C-G 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_84476.1
Basepair signature:
|
94.23 | 21.67 | 3 | 2 |
Multiple bulged bases |
| 2 |
Motif group IL_07039.3
Basepair signature:
|
92.31 | 11.37 | 2 | 1 |
Major groove platform |
| 3 |
Motif group IL_42771.1
Basepair signature:
|
88.46 | 15.17 | 3 | 1 |
Multiple bulged bases |
| 4 |
Motif group IL_00225.13
Basepair signature:
|
75.00 | 0.69 | 1 | 1 |
Single bulged G |
| 5 |
Motif group IL_81831.1
Basepair signature:
|
69.23 | 13.30 | 4 | 1 |
Intercalated cWS |
| 6 |
Motif group IL_73452.2
Basepair signature:
|
68.27 | 12.88 | 4 | 1 |
|
| 7 |
Motif group IL_66635.5
Basepair signature:
|
64.42 | 6.01 | 3 | 1 |
Major groove intercalation |
| 8 |
Motif group IL_33761.2
Basepair signature:
|
64.42 | 0.08 | 4 | 1 |
|
| 9 |
Motif group IL_26793.1
Basepair signature:
|
63.46 | 7.14 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_90729.1
Basepair signature:
|
63.46 | 2.65 | 2 | 1 |
Single stack bend |
Loop 3 Internal loop
Column numbers: 127-128, 369-371
Scored sequences and counts
UU*A-A 39
UC*G-A 18
UA*U-A 14
CC*G-G 6
UG*U-A 4
CC*GUG 2
CU*A-G 2
UC*A-A 2
UG*C-A 2
UU*A-U 2
UU*G-A 2
CC*GCG 1
UC*GUA 1
AC*G-G 1
AU*A-U 1
CA*U-G 1
CU*G-G 1
UC*G-G 1
UC*G-U 1
UU*A-G 1
UU*C-U 1
UU*U-A 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_84476.1
Basepair signature:
|
95.19 | 26.52 | 4 | 2 |
Multiple bulged bases |
| 2 |
Motif group IL_07039.3
Basepair signature:
|
95.19 | 16.14 | 2 | 1 |
Major groove platform |
| 3 |
Motif group IL_42771.1
Basepair signature:
|
94.23 | 23.00 | 2 | 1 |
Multiple bulged bases |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
92.31 | 21.00 | 3 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_00225.13
Basepair signature:
|
90.38 | 4.95 | 2 | 1 |
Single bulged G |
| 6 |
Motif group IL_66635.5
Basepair signature:
|
87.50 | 13.62 | 3 | 1 |
Major groove intercalation |
| 7 |
Motif group IL_73452.2
Basepair signature:
|
85.58 | 19.84 | 4 | 1 |
|
| 8 |
Motif group IL_26793.1
Basepair signature:
|
83.65 | 12.92 | 2 | 1 |
Single stack bend |
| 9 |
Motif group IL_90729.1
Basepair signature:
|
83.65 | 11.65 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_16386.4
Basepair signature:
|
83.65 | 8.30 | 5 | 1 |
|
Loop 4 Internal loop
Column numbers: 130-170, 318-367
Scored sequences and counts
U---------------------------------------U*CCUGCUUUGUGCAAGCAAGAUUCUUGACAUGAGGUAAUCAUGAG-----A 1
U---------------------------------------U*GAAAUCCUUAGACUUGGAGACUCUUUUUUAAGAGAG-------------A 1
C---------------------------------------A*GUCUCUG---GUUUCGGGGCAUCCCGUGCUUCUUUAA------------G 1
U---------------------------------------U*UUAUAUUAAUAAUUUCUUGAUUAGGAGUGAAAUG---------------G 1
U---------------------------------AGAAGAA*UUAUCUUGGUCUGUUUG--------------------------------G 1
U---------------------------------------U*AAUGAACUUUUUGAAAUG-------------------------------A 1
U---------------------------------------U*--------------------------------GGAGAUUCUGCGAAUUGA 1
U---------------------------------------U*UAUGAAUUUCCCAAUUG--------------------------------G 1
U------------------------UAUGCCUGAAACCAAG*G------------------------------------------------A 1
C---------------------------------------U*UUAGGAUUUUCAAAA----------------------------------G 1
U---------------------------------------U*GACUUUUUGAAAUG-----------------------------------A 1
U---------------------------------------U*AAUUCUUAAUUG-------------------------------------A 1
U---------------------------------------U*CUCUCUUAAUUG-------------------------------------A 1
C---------------------------------------U*AAUUUUCAAAA--------------------------------------G 1
U---------------------------------------U*UCUGAUAAUCG--------------------------------------G 1
U---------------------------------------C*UGGUAAUAG----------------------------------------G 1
C---------------------------------------C*UUAAAG-------------------------------------------A 1
A--------------------------------------UU*UUU----------------------------------------------U 1
U------------------------------------CACG*G------------------------------------------------G 1
Omitted sequenced and counts
C----------------------------------------*-------------------------------------------------G 23
U----------------------------------------*-------------------------------------------------A 21
U----------------------------------------*-------------------------------------------------G 5
U---------------------------------------U*-------------------------------------------------A 4
C---------------------------------------U*-------------------------------------------------G 3
U----------------------------------------*A------------------------------------------------A 2
U----------------------------------------*U------------------------------------------------A 2
U----------------------------------------*GGAAAUGAUAAAUUCAUUUAAUAAACAAUUUCAAUAACUGAGAUAAUUGG 1
UAGCGUCUGAAAAGACCAUGUGAAAGUUCAAUGAACUUUUA*-------------------------------------------------A 1
U--AGUGCUUAUGUGUCAAAAACUUUUAGUUUUUGAGCACU*-------------------------------------------------A 1
U----------------------------------------*AUUGUUCGGAAGCAUAGGGAAUAAACUCCUUUGCUUA------------A 1
C----------------------------------------*UGGUGCAAACUGACGUAACA-----------------------------G 1
C----------------------------------------*UCUUUUGUGAUG-------------------------------------G 1
U----------------------------------------*UUCCCCAAUUG--------------------------------------A 1
U----------------------------------------*UAGUGUAUCG---------------------------------------A 1
U----------------------------------------*CUGUUUUA-----------------------------------------G 1
U----------------------------------------*U------------------------------------------GAAUUGG 1
U----------------------------------------*GCUUGA-------------------------------------------U 1
U-----------------------------------CAUGA*-------------------------------------------------G 1
C------------------------------------UAGU*-------------------------------------------------G 1
U------------------------------------CACG*-------------------------------------------------G 1
C-------------------------------------UAC*-------------------------------------------------G 1
U-------------------------------------UAA*-------------------------------------------------A 1
A--------------------------------------GA*-------------------------------------------------G 1
C----------------------------------------*AG-----------------------------------------------G 1
C--------------------------------------UA*-------------------------------------------------G 1
U--------------------------------------UA*-------------------------------------------------A 1
C----------------------------------------*A------------------------------------------------G 1
C---------------------------------------C*-------------------------------------------------G 1
U----------------------------------------*A------------------------------------------------G 1
U---------------------------------------A*-------------------------------------------------A 1
U----------------------------------------*-------------------------------------------------U 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_78800.1
Basepair signature:
|
5.26 | -7737.80 | 16 | 14 |
|
| 2 |
Motif group IL_99358.1
Basepair signature:
|
5.26 | -8838.89 | 13 | 13 |
|
| 3 |
Motif group IL_51387.2
Basepair signature:
|
5.26 | -8874.80 | 13 | 12 |
|
Loop 5 Internal loop
Column numbers: 170-178, 306-318
Scored sequences and counts
-----AGUG*GAUUUACUUUUA- 2
AAAUGCAGA*GCGCAGGUCAAGU 1
AGUGCUGGC*GCCGGCACAGGAG 1
CAGCACAUU*GCAGGACUAUCCU 1
CAGUACAUU*GAAAACUUUAAGU 1
GAAAAUCCU*GAUUUUACUUUAG 1
GCCAAGAAU*GGUAGAGUCAAGG 1
UAAGACAUU*GUGCAAAUUAAUU 1
UAAGGCAUU*GUGCAGGUAAAUC 1
UAAUAUAUC*GAAGGGUCUCUUG 1
UAGCACAUC*GAAAGAAAAUUAA 1
UAGCACAUU*GAAAGAAAAUCUU 1
UAGCACAUU*GAAGAAAUUCGUU 1
UAGCACAUU*GAUAGAAUUAAAA 1
UAGCACUUU*GAAAAGAAUUUGC 1
UAGCGCAUC*GGAAGGUUCAGAA 1
UAGUACAUU*GCUUCCGUAGGAG 1
UAGUGCAUU*GCUUCCUUGAAAU 1
UUGCACAUA*GGCAGAUAAAAAU 1
-AGUGCAUU*GCAACAGAAAAUC 1
-AGUGCCAA*GGAACACAGAAGG 1
-UAGCACAU*GAAGGAACUUUGU 1
-UAGUACAU*GGCAAGAGUUAAU 1
ACAUAAGUC*GAUUAUUCAACG- 1
ACGGCAAUU*GGUCUAUUAAAA- 1
GGCAAGAGC*GAAAAGUAAACG- 1
UACGACUUU*GAACAGAAUCUA- 1
UAGCACGUU*GGUUUACUUUUA- 1
--AAUUCCA*GUAUAUACUAAGU 1
UAGCACAUU*GGUAAUAAUUG-- 1
---UACGGC*GAGCAAAGGCGUU 1
---UUAUCU*GAAGUCUUUGACU 1
-CUGAACGC*GGUUUAUUUCG-- 1
CGACUAACG*GAAACCUUUG--- 1
UACGGUUUU*GAAUUCAUGA--- 1
UAGCACAUU*GACUGAAACA--- 1
UGCAGUGUA*GAUUAAUUAA--- 1
CAGCACAUU*GAAUUGAAU---- 1
----UACGA*GCAUUCAACUAG- 1
---AAAUUA*GUAACUAAAUU-- 1
---UAGGGU*GAUAUAACAAA-- 1
AAGGCAUGG*GAGACUUG----- 1
AGGCAUGGA*GAAACUUG----- 1
AGUGCAUUG*GAAACUUA----- 1
AUAUGUCCA*GAUACUUA----- 1
AUGGCUUAG*GUAAUUUG----- 1
UAGCACAUU*GGCAAUUG----- 1
UAGCGCGCU*GGCAAUUG----- 1
UAGUACAUU*GGCACAGA----- 1
UAUCAGAAA*GAAUCUUG----- 1
----UACGA*GAUAAUAAAAA-- 1
--UAGUACA*GAAGAUAAG---- 1
------CAU*GAAAAACAAAAG- 1
---UAGUGC*GACUGAAAG---- 1
-------AG*GAUUUACUUUUA- 1
-------AG*GGAAGUGCAGCA- 1
-------AG*GGAAGUGUAGCA- 1
------AAU*GGAGUUUAGU--- 1
------CGG*GAAGAUUAG---- 1
Omitted sequenced and counts
---------*GAUUUACUUUCA- 4
---------*GAAAUAUAUAAG- 2
---------*GAUUUACUUUAA- 2
---------*GGAUAAAUAAUU- 2
---------*GAAAACAAGAA-- 2
--------U*GGCGCACUAACUU 1
---------*GAAUUUAAUAAAA 1
---------*GACAAAAAAAAUU 1
---------*GAGAAAAUAAAAA 1
---------*GGAACUCCGAACA 1
---------*GGCGAGGUUAUUG 1
---------*GGGUUAACUUUAA 1
---------*GGUCUUUCAAGAA 1
---------*GGUUUUACUUUCA 1
---------*GAAUAUUAUUAA- 1
---------*GAAUUAAUUAAA- 1
---------*GAGAACCAAUAA- 1
---------*GAUUAGAAUACA- 1
---------*GAUUUACUUUUA- 1
---------*GAUUUAUUUUUA- 1
---------*GAAAACAGAAA-- 1
---------*GAAGAAAAAUU-- 1
---------*GAAGAAAAUAA-- 1
---------*GAUAACAAGAA-- 1
---------*GCACAUAAUAA-- 1
---------*GCUCUUGAAAG-- 1
---------*GUUUAUUUUUA-- 1
---------*GAAAAUACAU--- 1
---------*GAAUUCGUAA--- 1
---------*GACGUAAAAA--- 1
---------*GCAAUUAAGG--- 1
--------C*GAUAUUAAG---- 1
---------*GACAUGAAA---- 1
---------*GAUUAAAGA---- 1
---------*GCAUCCUUG---- 1
---------*GGCAAUCG----- 1
---------*GUGACUUA----- 1
No Matches Found
View All Results for this LoopLoop 6 Internal loop
Column numbers: 180-209, 302-304
Scored sequences and counts
AAACUAAUAUCUGUUUGUCAUAAAAUUCAA*UGG 1
AACUCUAAGUUUUAUUGUUAUAAAAUUCAA*UGG 1
AAGAAAUACUGACAAUGUUAUAAAAUACAG*CAG 1
AAGGAUUUUGGAGAAAGGUAUCAAAUGCAA*UGG 1
AAUCUUCUGAUUAUCGGCUGUGAAAUUCAG*CGG 1
ACCGUUACAUUUUGAGGUUAUAAAGUUCAA*UGG 1
ACUUUCCUUUUGAGAAGUUAUGAAAUGCAG*CAG 1
AGAACUCUUAAGUGAGUCAGUAAAAUUCAA*UGG 1
AGCUUAUUUGAUUUGCUGUAUGAAAUUCAA*UGG 1
AGUGCCUUUUAAUAGGCUAGUAAAAUACAA*UGG 1
AGUGCUUUCAUAAGAAGCCAUAAAAUUCAA*UGG 1
AGUGCUUUGUUUUUUAGCCAUGAAAUUCAA*UGG 1
AGUGCUUUUUAAAAAAGCCAUAAAAUUCAA*UGG 1
AUACUUUCUUAUGAAAGUUAUAAAAUUCAA*UGG 1
AUAUUAAGUCCAAAUGCUGAUAAAAUUCAA*UGG 1
AUGUAGCAAAAGUGCUACAAUAAAAUACAA*UGG 1
AUUAAUUUGAUUUUAAGUCAUGAAAUACAG*CAG 1
AUUUGUUUUAAAACAAAUCAUAAAAUUCAA*UGG 1
CACAAAGAUUUCUGAAGCCAUCAAAUACAA*UGG 1
CACGGCAAUCUUAGUUGUCAUUAAAUGCAA*UGG 1
CGAUUUAAACCAUUGAGUCAUAAAAUACAG*CAG 1
CGAUUUAAGUCUAUAUGCCAUGAAAUACAA*UGG 1
CGGCAACCAAAAAGUUGUUAUAAAGUUCAA*UGG 1
CUCUAAAUGAGCAAUAGUUAUAAAAUACAG*CAG 1
CUUCCUAUGAUUUGUUGUGAUAAAAUACAA*UGG 1
CUUUAAAUUUUUAGAAGUCAUAAAAUUCAA*UGG 1
GAAGACAACCAAAGUUGUCAUAAAAUACAG*CAG 1
GAUAGACAACUAUGUUGUCAUAAAAUACAG*UGG 1
GCCAGAUUUUUUUCUGGACAUGAAAUACAG*CAG 1
GCCAUUAUGUUUUUGGGCUAUAAAGUGCAG*CAG 1
GCCUCUUUGGGCACCAGACAUGAAAUUCAA*UGG 1
GCGCUUUCUAAAGAAAGCCAUAAAAUUCAA*UGG 1
GGAUUUAAUGACUCUUGGCAUGAAAUACAG*CAG 1
GUGUUGUUAGAAUGCAAUCAUAAAAUACAA*UGG 1
GUUGGCUUUUCUGCCAACUGUGAAAUACAG*CAG 1
GUUUAGUUUAUUUUAAGUCAUAAAAUACAG*CAG 1
UAAUAAUAUAAUUAAUGUCAUAAAAUACAG*CAG 1
UAAUGCUGCAUUUUAUGACAUAAAAUACAG*CAG 1
UAGAUUUCUAAAAAUGCCAGUAAAAUACAG*CAG 1
UAGUCUUGCUUGCGCAAGCAUGAAAUUCAG*UGG 1
UAUGAGAACUUUUGUUCCUAUAAAAUACAA*UGG 1
UGAUUGAAUCUAUAUGCCGAUGAAAUACAA*UGG 1
UGCAGCAAGCAGCAUUGCUAUGAAAUACAG*CAG 1
UGCUUUCAAGCAACCUGUCUUAAAAUACAA*UGG 1
UUAAAAUUAAUUUUAAGUCAUAAAAUUCAA*UGG 1
UUAAAAUUUAUUUUAAGCUAUAAAAUUCAA*UGG 1
UUAAAAUUUAUUUUAAGUCAUAAAAUUCAA*UGG 1
UUAAGAUUUAUUUUAAGUCAUAAAAUUCAG*CGG 1
UUAAGAUUUAUUUUAAGUCAUGAAAUUCAA*UGG 1
UUAAGGUUUAUUUUAAGCCAUAAAAUUCAU*AGG 1
UUAAGGUUUAUUUUAAGUCAUAAAAUUCAA*UGG 1
UUAAGUUUAUUUUAAGUCAGUAAAAUUCAA*UGG 1
UUCAUUAUUUAGCGUUCGGGUGCAAUACAG*CAG 1
UUCCUAAAGAAGUAUUGGUAUGAAAUACAG*CAG 1
UUCUAAUCAGAAUGAAAUCAUAAAAUACAG*CAG 1
UUCUCUCUAGAAGAAUGUCAUAAAAUACAA*UGG 1
UUGAGAUUUAUUUUAAGCCAUAAAAUUCAA*UGG 1
UUGAUUUUCAUUUUAAGUCAUAAAAUACAA*UGG 1
UUGUUAAUUUUAACAAACUAUGAAAUGCAA*UGG 1
UUUAAAUUUAUUUUAAGUCGUGAAAUACAG*CCG 1
UUUAAGUUUAAUUUAAGUCAUAAAAUACAG*CGG 1
UUUAGAUUUAUUUUAAGCCAUAAAAUACAA*CAG 1
UUUAGAUUUAUUUUAAGUCAUAAAAUACAG*CAG 1
UUUAGAUUUAUUUUAAGUCAUAAAAUUCAA*UGG 1
UUUAGAUUUAUUUUAAGUCAUAAAAUUCAG*CGG 1
UUUAGAUUUAUUUUAAGUCAUAAAAUUCAU*AGG 1
UUUAGAUUUAUUUUAAGUUAUAAAAUACAA*UGG 1
UUUAGAUUUAUUUUAAGUUAUAAAAUACAG*CAG 1
UUUAGGUUUAUUUUAAGUCAUGAAAUUCAA*UGG 1
UUUAUUUAUUUAUGAAGUUAUAAAAUACAG*CAG 1
UUUGAAUUUAUUUUAAGUUAUGAAAUACAA*UGG 1
UUUUUAUUUGAUUUAAGCCAUAAAAUACAG*UGG 1
-AAUGCAACAAAAGUUGUUAUAAAAUACAA*UGG 1
-AGCACUCUUAAUUGAGUCAUGAAAUUCAA*UGA 1
-AGUGCUCUUUUUAAAGCCAUAAAAUACAA*CAG 1
-AGUGCUUUAAACUAAGCCAUAAAAUUCAA*UGG 1
-CAAGGUAGCUAAGCUAUCAUAAAAUACAG*CAG 1
-CAUGGCCAUUUAAUGGUUAUAAAAUACAG*CAU 1
-GACGGCAAUAUAAUUGUCAUAAAAUACAA*UGG 1
-GAGGGCAACAAUGUUGUCAUAAAAUACAA*UGG 1
-GAGGGCAACUUAGUUGUCAUAAAAUACAA*UGG 1
-UACGGGAGCAUCGCUCUCAUAAAAUACAG*CAG 1
-UAUGACAGUAUAACUGUUAUAAAAUACAA*UGG 1
-UAUGGCAACCUAGUUGCUAUUAAAUACAA*CGG 1
-UAUGGGAGCCCAGCUCUUAUAAAAUACAG*UGG 1
AGUUUAAGAUGAUUUAAAC-UAGAAUGCAA*UGG 1
UUUAGGUUUAUUUUAAGUCAUAAAA-ACAG*CGG 1
--AAUACAGCUUUGCUGUAAUAAAAUACAA*UGG 1
--AAUGCAACGUUAUUGCUAUAAAAUACAA*UGG 1
--AGAACCAUUUUGUGGGCAUAAAAUACAU*AGG 1
--AGCGCUCUUAUAGAGCCAUAAAAUACAG*CAG 1
--UAAGGCAGUAAUCUGUCAUAAAAUACAA*UGG 1
--UAAGGCAGUAAUCUGUCAUAAAAUACAG*UGG 1
--UAGGGCAAGAAAUUGCUAUAAACAACAA*CGG 1
--UAUAUCUCAAAGGAGAUAUAAAAUACAA*UGG 1
--UAUGGCAACUUGUUGCUAUAAAAUUCAA*UGG 1
--UAUGGCAGCUUGCUGCUAUAAAAUGCAC*UGG 1
--UAUGGGAGCUUGCUCUUAUAAAAUACAA*UGG 1
--UAUGGGAGUUUACUCUUAUAAAAUGCAA*UGG 1
---UAUAUCUCUUUGAGAUAUUAAAUUCAA*UGG 1
----AAGCUUCCAAUAGCGAUAAAAUUCAA*UGG 1
-----UAAGGAUAAAAUCCAUAAAAUACAA*UGG 1
-----UAUGCUCCUAGGGCGUCAAAUGCAA*UGG 1
-------------------UUCCAAUUCAA*UGG 1
No Matches Found
View All Results for this LoopLoop 7 Internal loop
Column numbers: 213-216, 295-298
Scored sequences and counts
CAAC*GAAG 28
CGAC*GAAG 18
UGAC*GAAA 13
CAAU*AAAG 4
CGAU*AAAG 4
UAAC*GAAA 4
CAAU*AGAG 3
UGAU*AAAA 3
UUUC*GAAA 3
AAAC*GAAU 2
UGAC*GAAG 2
UGAU*AAAG 2
UUCC*GGAA 2
UUUC*GGAA 2
AAAU*AAAU 1
AGAC*GAAU 1
AGAU*AAAU 1
AUUC*GAAU 1
CAAU*AACG 1
CCUC*GAUG 1
CGAU*GGAG 1
CGCU*ACCG 1
UAAU*AAAA 1
UAAU*AAAG 1
UGAC*GAAC 1
UGAC*GAAU 1
UGAC*GGAA 1
UGAC*GGAU 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_09705.15
Basepair signature:
|
92.31 | 71.93 | 1 | 0 |
Double sheared |
| 2 |
Motif group IL_41344.1
Basepair signature:
|
92.31 | 25.92 | 5 | 2 |
|
| 3 |
Motif group IL_48444.6
Basepair signature:
|
90.38 | 35.98 | 3 | 2 |
|
| 4 |
Motif group IL_99358.1
Basepair signature:
|
90.38 | 21.89 | 3 | 2 |
|
| 5 |
Motif group IL_80398.1
Basepair signature:
|
89.42 | 63.77 | 2 | 1 |
Minor groove platform |
| 6 |
Motif group IL_84251.1
Basepair signature:
|
85.58 | 37.63 | 3 | 1 |
|
| 7 |
Motif group IL_10484.1
Basepair signature:
|
85.58 | 16.68 | 4 | 2 |
Double sheared |
| 8 |
Motif group IL_77691.5
Basepair signature:
|
82.69 | -4.23 | 2 | 1 |
UAA/GAN related |
| 9 |
Motif group IL_25872.4
Basepair signature:
|
81.73 | 12.80 | 5 | 1 |
|
| 10 |
Motif group IL_71598.1
Basepair signature:
|
73.08 | 4.54 | 3 | 2 |
|
Loop 8 Internal loop
Column numbers: 217-218, 292-294
Scored sequences and counts
AA*U-U 19
AG*C-U 13
AU*A-U 13
AC*G-U 12
AG*U-U 6
AA*UAU 2
AC*GAU 2
AA*UCU 1
AG*UAU 1
GG*CAC 1
AU*C-U 1
AU*G-U 1
CC*G-U 1
CG*C-U 1
CU*U-C 1
GG*U-C 1
UU*-CU 1
Omitted sequenced and counts
A-*--U 14
U-*--A 9
U-*--U 2
AA*--U 1
UA*--U 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
96.10 | 24.34 | 2 | 1 |
Major groove platform |
| 2 |
Motif group IL_42771.1
Basepair signature:
|
93.51 | 24.94 | 3 | 1 |
Multiple bulged bases |
| 3 |
Motif group IL_00225.13
Basepair signature:
|
93.51 | 4.34 | 1 | 1 |
Single bulged G |
| 4 |
Motif group IL_84476.1
Basepair signature:
|
92.21 | 23.21 | 3 | 2 |
Multiple bulged bases |
| 5 |
Motif group IL_81831.1
Basepair signature:
|
92.21 | 21.08 | 4 | 1 |
Intercalated cWS |
| 6 |
Motif group IL_66635.5
Basepair signature:
|
92.21 | 17.27 | 3 | 1 |
Major groove intercalation |
| 7 |
Motif group IL_33761.2
Basepair signature:
|
92.21 | 11.26 | 4 | 1 |
|
| 8 |
Motif group IL_26793.1
Basepair signature:
|
84.42 | 18.49 | 2 | 1 |
Single stack bend |
| 9 |
Motif group IL_90729.1
Basepair signature:
|
84.42 | 13.09 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_73452.2
Basepair signature:
|
83.12 | 20.53 | 4 | 1 |
|
Loop 9 Internal loop
Column numbers: 219-225, 285-291
Scored sequences and counts
UUAGUAA*UGAA-AA 5
UAAGUAA*UGAA-AU 4
UUAGUAG*UGAA-AA 3
CCAGUAG*CGAAAAA 2
CUGGUAA*UGAA-CG 2
UAAGUAC*GGAA-AU 2
UAAGUAG*CGAA-AU 2
UUAGUAA*UGAA-AG 2
UUAGUAA*UGAA-UA 2
UUAGUAG*CGAA-AA 2
UUAGUAG*CGAA-AU 2
UUAGUAG*CGAA-UA 2
UUAGUAG*UGAA-AC 2
UUGGUAG*CGAA-GA 2
AUAGUAU*UGAAUCC 1
CAAGUAG*CGAACGU 1
CCAGUAG*UGAACGU 1
CUGGUAA*UGAACGU 1
UGAGUAG*UGAAAUC 1
AUAGUAA*UGAA-AC 1
AUAGUAA*UGAA-AU 1
AUAGUAG*UGAA-AC 1
AUGGUAG*CGAA-UG 1
CAAAUAG*CGAA-GG 1
CAAGUAA*CCAA-AC 1
CAAGUAG*CGAA-AC 1
CUAAUAA*UGAA-UA 1
CUAGUAG*CCAA-CC 1
CUAGUAG*UGAA-CC 1
CUGGUAG*UGAA-CG 1
UAAGUAA*CGAA-AU 1
UAAGUAU*AGAA-AU 1
UCAGUAG*CGAA-UA 1
UGAGUAA*UGAA-AA 1
UUAGUAA*UGAA-AU 1
UUAGUAA*UGAA-CA 1
UUAGUAA*UGAA-CU 1
UUAGUAC*GGAA-AU 1
UUAGUAG*CAAA-UA 1
UUAGUAG*CGAA-AG 1
UUAGUAG*CGAA-UU 1
UUAGUAG*UGAA-CA 1
UUAGUAG*UGAA-UC 1
UUGGUAA*UGAA-UA 1
UUGGUAG*CGAA-UA 1
GA----U*AC----- 1
----UA-*-----UG 1
Omitted sequenced and counts
-------*------- 35
------A*UAAA-GC 1
GA----U*A------ 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_26307.2
Basepair signature:
|
95.52 | 54.67 | 3 | 1 |
7x6 Sarcin-Ricin; G-bulge |
| 2 |
Motif group IL_24254.1
Basepair signature:
|
86.57 | 30.78 | 4 | 1 |
7x6 Sarcin-Ricin with UU cWW pair; G-bulge |
| 3 |
Motif group IL_61286.1
Basepair signature:
|
83.58 | 10.63 | 6 | 2 |
8x6 Sarcin-Ricin with inserted A; G-bulge |
| 4 |
Motif group IL_04346.10
Basepair signature:
|
73.13 | -2.66 | 4 | 2 |
8x7 Sarcin-Ricin; G-bulge |
| 5 |
Motif group IL_16458.4
Basepair signature:
|
58.21 | 1.03 | 5 | 2 |
Sarcin-Ricin target in LSU H95; G-bulge |
| 6 |
Motif group IL_41756.4
Basepair signature:
|
56.72 | -8.85 | 5 | 2 |
8x6 Sarcin-Ricin with inserted Y; G-bulge |
| 7 |
Motif group IL_29198.2
Basepair signature:
|
56.72 | -8.87 | 5 | 3 |
7x7 Sarcin-Ricin with intercalated A; G-bulge |
| 8 |
Motif group IL_47346.2
Basepair signature:
|
37.31 | -23.61 | 6 | 3 |
tSH-tSH-tHH-tHS |
| 9 |
Motif group IL_65594.1
Basepair signature:
|
22.39 | -21.91 | 5 | 3 |
8x7 Sarcin-Ricin; G-bulge |
| 10 |
Motif group IL_88269.4
Basepair signature:
|
19.40 | -28.89 | 4 | 3 |
6x5 Sarcin-Ricin; G-bulge |
Loop 10 Hairpin loop
Column numbers: 227-283
Scored sequences and counts
-------------GAAA---------------------------------------- 8
-------------UGCG---------------------------------------- 6
-------------CUAAUGU------------------------------------- 4
-------------UACG---------------------------------------- 4
-------------GCAA---------------------------------------- 3
-------------UGAAAUAUU----------------------------------- 2
-------------CUAAUGC------------------------------------- 2
-------------CUAGUU-------------------------------------- 2
-------------AUCU---------------------------------------- 2
-------------UUCG---------------------------------------- 2
GGGUUUCUUUUUUAGAAAAAAAGAAACUACUGUGGUAGA-----AAAAACUACAAUU 1
GUUAAUUUUU---CCUUACGAGAAAAAAUUAAUUGCAAUAAAA----AAUAUUUACA 1
UUACAUUUGG---AAAUAUCCUAGAAAUCUUUGAUUUCUUCGUA---CCUAAUGU-- 1
UUAAAGGAAG---GUUGAACUUCAAGGAAACGUAG------------UUGCCUUACG 1
A------------AAACAUUGGAAGUCUGAAAAGAUGAAAAAU-------------G 1
CA-CAAAUGUGA-UGGUCU--------------------------UUACAUUUCUUG 1
-------------AAUGAUAGAACCUUGGGGAAGUUUUUGA---------------- 1
U------------AUGAUAAAACUCUGGGAAAGCUUUUG-----------------A 1
-------------AAUGAAACAACCUUGGGGAAGUUUGGA----------------- 1
-------------AAUGACAAACCUUGGGUAAGUUCUUCC----------------- 1
-------------GAUGAUAAGUGUGUGGGAAGCGCUUGA----------------- 1
-------------UAUAAAAGAUGUGUGGGAAGCUCUUUU----------------- 1
-------------UAUAAAAGGUGUGUGGGAAGCCCUUUC----------------- 1
GCUAAAAGGUGU-GUGGGAA-------------------------GC-CCUUU---U 1
UAUAAAAGG----CGUGUGGGAAGC-----------------------CCUUUC--- 1
UAUAAAAGGUGU-GUGGGAA-------------------------AC-CCUUU---C 1
-------------AAUGAAGAACCUUGGGUAAGUUUGGA------------------ 1
-------------AAUGACAAGCCUUGGGGAAGUUUUGA------------------ 1
-------------GAUGAACGACCUUGGGGAAGUUGGGA------------------ 1
-------------GAUGACAAGCCUUGGGGAAGUUUUGA------------------ 1
------AAGG---AAAGAUCCUAGGGAAA------------------UCUUGA---- 1
U------------AUGAAAAACCUUGGGGAAGUUUGG-------------------A 1
-------------AAUGAGGGAACCGAAAGUGAGCUGA------------------- 1
-------------GAUGAAGGAACCAAAAGUGAGCUGA------------------- 1
-------------GAUGAAGGAACUGAAAGUGAGCUGA------------------- 1
UAUGAUAGCC---UUCG------------------------------GGAAGCCAGA 1
G------------AUGAUUUGCUUAAAAGGGGUG----------------------U 1
GAUGAUCUUA---GAAA------------------------------AAAGG-GAUU 1
-------------AAUGACUCGCUCGAAUGAGGA----------------------- 1
-------------AUAGACUAAGGUUUACAUG------------------------- 1
A------------AUUAGCUAUUAAGCAA----------------------A----U 1
CCAA---------UCUCCAU---------------------------------UUGG 1
GCGA---------UUUCCA---------------------------------UUCGC 1
-------------UGAUGCUUAGCAC------------------------------- 1
-------------UGAUGCUUCGCAC------------------------------- 1
-------------AAUUCUAGAAA--------------------------------U 1
-------------UAUGAUAUGAAU-------------------------------- 1
-------------UAUUAUAUGAAU-------------------------------- 1
UCUU---------GCAA------------------------------------AGGA 1
UUUC---------GAAA------------------------------------GAGA 1
AC-----------UUUAUU------------------------------------GU 1
UUU----------CUG-------------------------------------GAAA 1
-------------UCUAAUGUG----------------------------------- 1
-------------UUAUUUUUU----------------------------------- 1
UU-------------AAACC-----------------------------------AA 1
-------------CUUAAAAA------------------------------------ 1
CU-----------UUCU--------------------------------------UG 1
GC-----------GUUU--------------------------------------GC 1
GU-----------GAUA--------------------------------------GC 1
U------------GAAA-------------------------------------AUU 1
-------------CCAAUGU------------------------------------- 1
-------------CUAACGC------------------------------------- 1
-------------CUAAUAU------------------------------------- 1
-------------CUAUUGC------------------------------------- 1
A------------CAGUU--------------------------------------U 1
C------------------GUAA---------------------------------G 1
U------------UCGC---------------------------------------A 1
U------------UUAA---------------------------------------A 1
-------------GAAAU--------------------------------------- 1
-------------UUUU---------------------------------------G 1
C------------AAU----------------------------------------G 1
C------------CGU----------------------------------------G 1
-------------AAAU---------------------------------------- 1
-------------AUAU---------------------------------------- 1
-------------GUAA---------------------------------------- 1
-------------UCCG---------------------------------------- 1
-------------UUAA---------------------------------------- 1
-------------UUAU---------------------------------------- 1
-------------UUUC---------------------------------------- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_13189.1
Basepair signature:
|
27.88 | -3608.40 | 5 | 4 |
|
| 2 |
Motif group HL_56131.2
Basepair signature:
|
24.04 | -3369.29 | 4 | 4 |
|
| 3 |
Motif group HL_48778.2
Basepair signature:
|
24.04 | -4310.87 | 3 | 4 |
Mini UNCG |
| 4 |
Motif group HL_56334.1
Basepair signature:
|
24.04 | -4317.03 | 3.5 | 4 |
Mini UNCG |
| 5 |
Motif group HL_32346.4
Basepair signature:
|
21.15 | -4319.42 | 3 | 4 |
|
| 6 |
Motif group HL_53890.2
Basepair signature:
|
20.19 | -3411.09 | 3 | 3 |
|
| 7 |
Motif group HL_70782.2
Basepair signature:
|
19.23 | -4296.80 | 4 | 4 |
|
| 8 |
Motif group HL_78677.1
Basepair signature:
|
19.23 | -4535.00 | 5 | 5 |
|
| 9 |
Motif group HL_35941.1
Basepair signature:
|
16.35 | -4550.71 | 5 | 5 |
|
| 10 |
Motif group HL_37824.7
Basepair signature:
|
15.38 | -3233.65 | 3 | 3 |
GNRA |