JAR3D
Query RF03019-3.98 completed
Run on Motif Atlas Version 3.98
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
RF03019 RT-16 RNA
Input Summary
00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
00000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666777777777788888888889999999999000000000011111111112222222222333333333344444444445555555555666666666677777777778888888
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
((((((((((((((.........................................................................))))))))))))))...................((((((((((...........................................(.(((((((..........................(((((..(((((....((.........................................................))....))).))..)))))...))))))).)....................................................))).)).)))))........
>URS0000D664D3_12908/1-187
CCCAGGGU------------------------GCAA---------------------------------------------------------GCCCCGGG-------------CCACACAUCCGCCUGC---------------------------------------AGUGCUGGCAGCCUCUUUGGGCACCAGACAUGAAAUUCAACAGCAACCGCCAGUAGAUU-------------AAACC-----------------------------------AAUUGAACGUC-UGAAGCUGUGGUGCCGGCACAGGAGUCUCUG---GUUUCGGGGCAUCCCGUGCUUCUUUAA------------GCA-GG-CGGGUUACCCUUG
>URS0000D696F1_12908/1-209
CCUGAGU-AGCAUG-AGAUAUCUAUUUC----CCAAUA-----------------------------------GACGUUGAUGAAAGCA-GCAAGCUUAGGG------------CUACAUGUAAAUCCAC-------------------------------------UACGACUAACGGCGAUUUAAACCAUUGAGUCAUAAAAUACAGUAACGCUAGCUAGUAGC------AAGG---AAAGAUCCUAGGGAAA------------------UCUUGA----GCCAA-CCC-UACCGUUGCAGUGAAACCUUUG---------------------------------------------------GUG-GA-UUUGCUACUUUCU
>URS0000D6AEE0_12908/1-155
UCUCUGAUGAGAAG-GC---------------UUAAA-----------------------------------------------GCGCUUUUUCGUGGAGG-------------CCACACGCCCACUUGC---------------------------------------------AAUGGCCAUUAUGUUUUUGGGCUAUAAAGUGCAGCUCUGACAA------AAGC-----------GUUU--------------------------------------GCUUAAA-GC--UGAAAGAGCAGUGGAGUUUAGU---------------------------------------------------GCA-AGCAGGGCUACUCUGU
>URS0000D69931_12908/1-181
ACAA-UUUUUGUUUUGACAAGUA---------AAAU------------------------------------------UACUUGAAAAAGCUGUUCUUUGUGUCAAGAAGG---CCACACGCCAGUUCAU---------------------------------------------CAUGACCGUUACAUUUUGAGGUUAUAAAGUUCAAUUGCAACAC---------------------AUAGACUAAGGUUUACAUG---------------------------------G-UGAAGCGAUGGUGAAAAACAAAAG-------------------------------------------------AUG-AAUCUGGCUACAAGAG
>URS0000D6CB1F_12908/1-192
CCAAGCAUCCAUUUAUCUUCUUUUCAG-----UUCUUU------------------------------------CUUAACCUGCCCCAAG-GGAA-CUUGGAG-----------CCACACGCCGCCUUGC----------------------------------------------AGUGCCAGAUUUUUUUCUGGACAUGAAAUACAGCGGCAACAGCUGGUAAGCCAA---------UCUCCAU---------------------------------UUGGCUGAACGUU-UGAAGCCGCAGUGGAAGUGCAGCA-------------------------------------------------GCA-AG-GGGGCUACGGUGC
>URS0000D68335_12908/1-148
CCAAG---------------------------GGAA------------------------------------------------------------CUUGGAG-----------CCACACGCCGCCUUGC----------------------------------------------AGUGUUGGCUUUUCUGCCAACUGUGAAAUACAGCGGCAACACAUAGUAUGGCGA---------UUUCCA---------------------------------UUCGCCUGAAUCCG-UGAAGCCGCAGUGGAAGUGUAGCA-------------------------------------------------GCA-AG-GAGGCUACGGUGC
>URS0000D6C68E_12908/1-198
CCUCACAAG-----------------------GCGGAA------------------------------------------------------CUCAACAGG-------------CUACACGCACAUUCAU---------------------------------------------------AGCGCUCUUAUAGAGCCAUAAAAUACAGAAGCAAUAGCAAGUAAC-------------GAUGAACGACCUUGGGGAAGUUGGGA------------------GCCAA-ACC-UAACGCUUCAGUGGAACUCCGAACAUUGUUCGGAAGCAUAGGGAAUAAACUCCUUUGCUUA------------AUG-AA-AGUGCUACAACUG
>URS0000D69470_12908/1-215
GCACCAGUUAUGUAAGUU--------------UAAG-----------------------------------------------GACUUGUAUAGAGUGUGCUUGAA--------CUACAUGCUUGACCAU---------------------------------AGAAGAAAAUGCAGAUUAAUGCUGCAUUUUAUGACAUAAAAUACAGCAGCGAUAGUUAGUAGUUAUGAUAGCC---UUCG------------------------------GGAAGCCAGAGCAAA-UAC-UAAAGCUGCAGUGCGCAGGUCAAGUUAUCUUGGUCUGUUUG--------------------------------GUG-GU-CAGGCUACCAGUG
>URS0000D6D250_12908/1-158
UCUUGGCAUUGAUCU-----------------CUAG--------------------------------------------------AGAUUGGUGUUAAGG-------------CCACACGCUCUUUUGU---------------------------------------------CGGGACUUUCCUUUUGAGAAGUUAUGAAAUGCAGUUGUGACCUUGAGUAAGAC-----------UUUAUU------------------------------------GUCUGAA-AAU-CGAAAUAACAGUGAAGAUUAG----------------------------------------------------ACA-AA-AAAGCUAUAAGAU
>URS0000D69A93_12908/1-194
CUGUCCCGAGCUGGGCGAGUG-CUGCA-----UAACC-------------------------------------UGCAACCAGUU-CCC--CUCAGGAUGGAG-----------CUACACGUCCUGCCAU-----------------------------------CAUGACAUAAGUCAAAGAAAUACUGACAAUGUUAUAAAAUACAGUCGCAACAGCUGGUAACCU-----------UUCU--------------------------------------UGGUGAA-CGUAUGAAGCGACAGUGAUUAUUCAACG-------------------------------------------------GUGUGC-AGGACUACAGAGU
>URS0000D6C3BB_12908/1-205
UCUUAGCUGUUAAUCU---AAAACUUAU----CCCA-------------------------------------AUAAGUCAAUGAAGAUUGAUAACUUGGA-------------CCACAUGCACGUUAAA--------------------------------------GAUGGCUUAGUCUCUAAAUGAGCAAUAGUUAUAAAAUACAGCGAUGAUAAUUAGUAAUU------------AUGAUAAAACUCUGGGAAAGCUUUUG-----------------AAUGAA-UAU-UAAAGUUGCAGUGUAAUUUG-----------------------------------------------------GUU-AA-UGUGCUACUAACC
>URS0000D6AA1F_12908/1-156
UCCCGCC-------------------------GAAA----------------------------------------------------------GGCAGGGG------------CUACAUGCUCUUUUAC------------------------------------------UACGGCGUUCUCUCUAGAAGAAUGUCAUAAAAUACAACUCUGACUAGA----UAC------------------GUAA---------------------------------GUAC-------UGAAGGGGUGGUGAGCAAAGGCGUUGGUGCAAACUGACGUAACA-----------------------------GUA-AG-AGAGCUAUUCGGG
>URS0000D6B470_12908/1-171
CUAUG---------------------------AGAAGUAAUGA-----------------------------------------------------CAUGGA------------UUACACGCCUGUUCAU-----------------------------------------AAUUCCAACUUCCUAUGAUUUGUUGUGAUAAAAUACAAUAGUAAUAACAAAUAGC-------------GAUGAUAAGUGUGUGGGAAGCGCUUGA-----------------GCGAA-GGU-UAAAACUAUGGUGUAUAUACUAAGU------------------------------------------------AUG-AA-CAAGCUAGUCUCC
>URS0000D6738B_12908/1-153
UCUUGGCAUUUACCCCAA--------------AUA------------------------------------------------UUGGGGCAUC-GUCUGGA-------------CUACACGCCUCUUUGC-------------------------------------------------UAGUCUUGCUUGCGCAAGCAUGAAAUUCAGCCGCGACAUUAAGUAGGC------------CGU----------------------------------------GCCGAA-AUA-UGAAGUGGUGGUGCAUCCUUG----------------------------------------------------GUA-AA-GGGGCUACAUUUG
>URS0000D6A39F_12908/1-177
CCCUAGAU------------------------CCAUAUUAAAAA-------------------------------------------------AUCUUGGG-------------CUACAUGCAUAUUUAC---------------------------------------UAGCACAUUAUUUGAAUUUAUUUUAAGUUAUGAAAUACAACAGCAAUGGUUAGUAAU-------------AAUGAUAGAACCUUGGGGAAGUUUUUGA----------------AUGAA-AGU-CAGAGUUGUGGUGACUGAAACA---------------------------------------------------GCA-AG-UAUGCUACUAGUG
>URS0000D6775E_12908/1-243
CCUA--GAGGGCUUAUCAAUUAACACCG----ACUA-------------------------------------CGGAGUACCAAGAUAAGCAAACAAAAGG-------------CUACACGUCCACUCAUAGCGUCUGAAAAGACCAUGUGAAAGUUCAAUGAACUUUUAUAUGUCCAAGGAUUUAAUGACUCUUGGCAUGAAAUACAGUGAUAAUAGUUAGUAGU-------------AAUGAAACAACCUUGGGGAAGUUUGGA-----------------GCGAA-AUC-UAAAGUUGCAGUGAUACUUA-----------------------------------------------------AUG-AG-GGGGCUACUACUA
>URS0000D65BBF_12908/1-230
CUUGAGAUGUUUUC------------------CCUGAAAAAUAUCAAUGAAA-----------------------------------GGCAACAACUUGGG-------------CUACAGGCACGAUCAU--AGUGCUUAUGUGUCAAAAACUUUUAGUUUUUGAGCACUAUCAGAAAUCACAAAGAUUUCUGAAGCCAUCAAAUACAAUAGCGAUAGCAAGUAGU-------------AAUGAAGAACCUUGGGUAAGUUUGGA------------------GCGAA-ACC-UAAAGUUAUGGUGAAUCUUG-----------------------------------------------------AUG-AU-CAUGCUACGACUG
>URS0000D6AAC7_12908/1-166
UGAAG---------------------------GAAAACAA--------------------------------------------------------CUUGGG------------CUACAUGCACAUUCAU-------------------------------------UAAGGCAUGGACAUAUUAAGUCCAAAUGCUGAUAAAAUUCAAUAACAAUAGCUAAUAAU-------------GAUGACAAGCCUUGGGGAAGUUUUGA------------------GUGAA-UAC-UAAAGUUAUGGUGAAACUUG-----------------------------------------------------AUG-AC-UGUGCUAGAUGCU
>URS0000D6C4D4_1046946/1-189
CCUA-GAAAUUAUCC-UGAUU-----------UCG---------------------------------------------AAUCAGGGAUAAUAAAGUGGG-------------CUACAUGCAUAUUCAU--------------------------------------UAAGGCAUGGAUGAUUGAAUCUAUAUGCCGAUGAAAUACAAUAACAAUAGUUAGUAGU-------------AAUGACAAGCCUUGGGGAAGUUUUGA------------------ACGAA-AAU-UAGAGUUAUGGUGAGACUUG-----------------------------------------------------AUG-AG-UGUGCUAUGCCUG
>URS0000D6A23F_12908/1-207
GUUU--AUCA-AGGAAUCUA------------UGACAACACGACCCU----------------------------------UAGGUUCCUAUGAAAGAAACAAAAGUGGG----UUACACGCAGGUUCAU---------------------------------------AGUGCAUUGACGAUUUAAGUCUAUAUGCCAUGAAAUACAAUAAUGAUAGUUAGUAAU-------------AAUGACAAACCUUGGGUAAGUUCUUCC-----------------AUGAA-UAC-UAAAAUUAUGGUGAAACUUA-----------------------------------------------------AUG-UA-UCUGCUAGAACUG
>URS0000D6AB1E_1046946/1-204
UCCUAGCUAUGUUG-CUUGG-AGGUUUUU---CCAA------------------------------------GAAAAUCUGUGAAGACAGCAUCAU--GGA-------------CUACACUCUUGUCUAU------------------------------------------AAAUUACAGCUUAUUUGAUUUGCUGUAUGAAAUUCAACAGAAAUAGAUGGUAGC-------------UAUAAAAGAUGUGUGGGAAGCUCUUUU-----------------GCGAA-UGC-UAAAUCUGUGGUGUAACUAAAUU--------------------------------------------------AUA-GA-UAAGCUAUUCUCA
>URS0000D68A2A_12908/1-205
CCAGUGAUCAUGAAUCAU--------------AAAUUCAC-------------------------------------------AU-AUUUAUGUUAACUGGA------------CUACACGCUCUUUUGC--------------------------------------UACGGCAAUUAAACUCUAAGUUUUAUUGUUAUAAAAUUCAACAACGACA-----UA-UUUACAUUUGG---AAAUAUCCUAGAAAUCUUUGAUUUCUUCGUA---CCUAAUGU--------UG--UGAAGUUGUGGUGGUCUAUUAAAA-------------------------------------------------GUA-AA-AGAGCUAUUGCAG
>URS0000D6B55B_12908/1-194
CCU--GGAGGAUUAUC----GAGUUCGUUC--CGACA----------------------------------GAAUGGAAAUUAAAGACAAGACUCGAAAGG-------------UUACACGUUCAUUCAU-------------------------------------------------AGUGCUUUGUUUUUUAGCCAUGAAAUUCAAUAAUGAUAAUUGGUAGUU------------AUGAAAAACCUUGGGGAAGUUUGG-------------------AGCGAA-GAU-UAAAGUUAUGGUGUGACUUA-----------------------------------------------------AUG-AA-UGGACUAUCUUUG
>URS0000D6BCF9_12908/1-178
CCAGG-AGU---AGCU----------------GAUA-------------------------------------------------AGCUCUUACUGCUUGGA------------CUACAAGCUCAUUUGU--------------------------------------------------AGUGCUCUUUUUAAAGCCAUAAAAUACAAAAGUGAUAGUUAGUAGCA------------AAACAUUGGAAGUCUGAAAAGAUGAAAAAU-------------GGCGAA-UAC-UAAAACUUCAGUGAGAAAAUAAAAA------------------------------------------------AUA-AA-UGGGCUAAACUUU
>URS0000D6D459_12908/1-200
UUGUCCUGAG----------------------CAGGUAAAGUACCGCACAGCUUGCGGUUGAGAAUGCC----------------------CUUAGGACGGGA-----------CUAUACGUCCUGCCAU------------------------------------CACGCCAAGAAUCUUCCUAAAGAAGUAUUGGUAUGAAAUACAGUCACAACAACUGGUAGCUCUU---------GCAA------------------------------------AGGAGUGAA-CGUCUGAAGUGACAGUGGUAGAGUCAAGG------------------------------------------------GUGUGC-AGGGCUACAACGC
>URS0000D683AB_12908/1-157
UAGGC-CUUGCGUUGCUUCUU-----------UAU---------------------------------------------GAGAAGUAAUGGAAGUGCUUGGG-----------CUACACGUCCUUUCGC-------------------------------------------UACGACAAACUAAUAUCUGUUUGUCAUAAAAUUCAAUCACGACAC---------------------CUAAUGC---------------------------------------------G-UGAAGUGGUGGUGCAUUCAACUAG-------------------------------------------------GCG-AG-AGGGCUACUGAGG
>URS0000D66BE2_12908/1-173
UCCCGAGCUGCAAC-GCC--------------AAAAAA---------------------------------------------GGUAGUUGCAGGAAGGGG-------------CUACACGCCCUGCCAU------------------------------------CACGGCAAGAGCCUGCAGCAAGCAGCAUUGCUAUGAAAUACAGCCAUGACAGCAAGUAGU-------------GAAA----------------------------------------ACGAACGUU-UGAAAUGGCAGUGAAAAGUAAACG-------------------------------------------------GUGCGC-GGGGCUACUGAGC
>URS0000D68875_12908/1-158
CCCUCGCCU-----------------------UGU---------------------------------------------------------AGGCUAGGG-------------CCACACACUCGCUUAU----------------------------------------AGUGCCAAUAAUCUUCUGAUUAUCGGCUGUGAAAUUCAGCAGUGACAGUUAGUAGU-------------UUAUUUUUU-----------------------------------GCGAA-AAU-UGAAACUGCGGUGGAACACAGAAGGCUUGA-------------------------------------------UUA-AC-UGAGCUGGAAUGU
>URS0000D6BE9B_12908/1-190
UUUAUUCCUCCGUCCUGGAAGCUC--------CUCAUCUUUUU----------------------------------GAGCAAUUGAUUUGGAGAAAUGGA-------------CUACAUGUCAAUUUAC---------------------------------------CAGUACAUUAUUUAGAUUUAUUUUAAGUCAUAAAAUUCAACUUUGACAUUAAGUAG--------------GAAA-----------------------------------------CGAA-AUA-UGAAAAGGUGGUGAAAACUUUAAGUUAAAG-------------------------------------------AUA-AA-UUGACUAUCUAUA
>URS0000D67F17_12908/1-136
UCCUGGCG------------------------UAAU---------------------------------------------------------UGUCAGGG-------------CCACACGUCUGCUCAU-------------------------------------------------CACGGCAAUCUUAGUUGUCAUUAAAUGCAACUGCAACACUUAGUAA--------------GUAA-----------------------------------------UGAA-AGGAUGAAGCGGUGGUGCUCUUGAAAG--------------------------------------------------AUGUAG-UAGGCUAGAUAAC
>URS0000D6CF58_1046946/1-159
UCUUGGUAUUAUUUAACU--------------UGAUUUGUGAU----------------------------------------AGUUAGAUAUC-UCAGGG-------------CUACACGCCUGUUUAU--------------------------------------------------CAUGGCCAUUUAAUGGUUAUAAAAUACAGCUGUGACACUUAGUAA--------------AUAU-----------------------------------------UGAA-CAGAUGAAACAGCAUUGCAAUUAAGG---------------------------------------------------AUA-AG-CAGGCUAUAUAGC
>URS0000D67C22_12908/1-149
CCUAGCCAU-----------------------UUA---------------------------------------------------------AUGGCUGGG-------------CCACAUGU-CAGUUUA--------------------------------------UUAAGACAUUAUUAAAAUUAAUUUUAAGUCAUAAAAUUCAAAAGCAAUAUUUAGUAC--------------UUAA-----------------------------------------GGAA-AUC-UAAAGCUUUGGUGUGCAAAUUAAUUUU----------------------------------------------UGC-UU-UGUACAAGCAAGA
>URS0000D681B6_12908/1-166
CUGGAGAAUUGCUC------------------UAU----------------------------------------------------GAGCAAUAAUCUAGA------------CUACAUGUAGAUUUAU----------------------------------------AGUGCAUUUUAGAUUUCUAAAAAUGCCAGUAAAAUACAGCAAAGAUAAUUAGUAGA-------------UUAU----------------------------------------UUGAA-AAU-UAAAUUUGCAGUGCAACAGAAAAUCUGUUUUA-----------------------------------------GUA-AA-UCUGCUACUUUAA
>URS0000D6AAA8_12908/1-135
CCUUGGC-------------------------GUA-----------------------------------------------------------GCCAGGG-------------CCACACGUCAGCUUAU-----------------------------------------------CACGGCAACCAAAAAGUUGUUAUAAAGUUCAACCGUGACGGUUAGUAGU-------------UUUU---------------------------------------GGCGAA-AGCACGAAACGAUGGUGAUAUUAAG----------------------------------------------------GUA-AG-UUGGCUACGUUGA
>URS0000D6715E_1046946/1-136
UCUUGGUU------------------------AAUG---------------------------------------------------------AACCAAGG-------------CCACACGUCAGUUUAC---------------------------------------------------UAAGGCAGUAAUCUGUCAUAAAAUACAACUGUAACACCCAGUAGC-------------AUCU----------------------------------------GCGAAAAAG-UGAAAUAGUGGUGAAAUAUAUAAG-------------------------------------------------GUA-AA-CUGGCUAAUGUUU
>URS0000D69B3C_12908/1-136
UCUUGGUU------------------------AAUG---------------------------------------------------------AACCAAGG-------------CCACACGUCAGUUUAC---------------------------------------------------UAAGGCAGUAAUCUGUCAUAAAAUACAGCUGUAACACCCAGUAGC-------------AUCU----------------------------------------GCGAAAAAG-UGAAAUAGUGGUGAAAUAUAUAAG-------------------------------------------------GUA-AA-CUGGCUAAUGUUU
>URS0000D6664D_12908/1-159
CCCAGCCA------------------------GUAAA--------------------------------------------------------UGGUUGGG-------------CCACAUGCCAGUUGCU-----------------------------------------------UAAUACUUUCUUAUGAAAGUUAUAAAAUUCAACUGCGACAACUGGUAAUUUUC---------GAAA------------------------------------GAGAAUGAA-CGUAUGAAGCAGUGGUGGCGCACUAACUUAGUGUAUCG---------------------------------------AGC-AA-AUGGCUACAACCG
>URS0000D6B0A5_12908/1-159
CUAGCA--------------------------UGGG-----------------------------------------------------------UGCUAGG------------CCACACGUCAGCUCAC---------------------------------------UAGUACAUUAUUUAGAUUUAUUUUAAGUCAUAAAAUUCAUUUUCGACAAUUAGUAGCGAUGAUCUUA---GAAA------------------------------AAAGG-GAUUGUGAA-CAU-UGAAGAAAAGGUGGCACAGA-----------------------------------------------------GUA-AG-CUGGCUAAAUAGU
>URS0000D6708D_12908/1-165
UUUGUAUUUC----------------------CCUGAGCAA--------------------------------------------------GAAAUAUAAAUAGGA--------CUACACGUCAAAAUAU---------------------------------------UAGCACAUUAUUAAGAUUUAUUUUAAGUCAUAAAAUUCAGUAGAAACAAUUAGUAAC-------------AAUUCUAGAAA--------------------------------UGUGAA-AUU-UGAAUCUACGGUGGCAAUUG-----------------------------------------------------AUA-UU-UUGGCUACUAGUU
>URS0000D68B65_12908/1-167
CUUGGAGUUUAUCUUUC---------------CAUGAGGAA-------------------------------------------GAAAGAUAAAGAA-AAGG------------CUACACGUCAAUUUAU---------------------------------------UAGCGCGCUAUUAAGGUUUAUUUUAAGCCAUAAAAUUCAUUUUCAAUAAUUGGUAGU-------------GAAAU---------------------------------------ACGAA-GAU-UAAAGAUUAGGUGGCAAUUG-----------------------------------------------------AUA-AA-UUGACUAAUUGGU
>URS0000D665E2_12908/1-241
UUUUCUUGAAAAUAUUGCCCAGAA--------GUAU-----------------------------------------UUCUU-GCAUGAGCAACAAGAAAAACUAAAUGGA---CUACACGUCAAUUAAU---------------------------------------UAGUACAUUAUUAAGAUUUAUUUUAAGUCAUGAAAUUCAACUUCAACAAUUAGUAGC-------------AAUGACUCGCUCGAAUGAGGA-----------------------GUGAA-AAU-UGAAGAAGUGGUGCUUCCGUAGGAGAAAUCCUUAGACUUGGAGACUCUUUUUUAAGAGAG-------------AUU-AG-UUGGCUACAAGAG
>URS0000D6C90B_12908/1-211
CCAGAGAGAUUUUCUUG---------------CAUGAGCAA-------------------------------------------CAAGAAAGUCAGA-UGGA------------CUACACGUCAAUUAAU---------------------------------------UAGUGCAUUAUUGAGAUUUAUUUUAAGCCAUAAAAUUCAACAACGACAAUUAGUAACUUU----------CUG-------------------------------------GAAAGUGAA-AAUAUGAAGUUGUGGUGCUUCCUUGAAAUUAUAUUAAUAAUUUCUUGAUUAGGAGUGAAAUG---------------GUU-AG-UUGGCUAUCUUAA
>URS0000D69217_12908/1-130
CUCUG---------------------------AAACC-----------------------------------------------------------UAGAG-------------CCACAUGUCAGUUUAU---------------------------------------------------AGAACCAUUUUGUGGGCAUAAAAUACAUCUGCGACAGAUAGUAGCA------------CAGUU--------------------------------------UGUGAA-ACU-UGAAGCAGAGGUGAUUAAAGA----------------------------------------------------AUA-AA-UUGGCUAAAAGGA
>URS0000D6CBBB_12908/1-122
UUAGGAG-------------------------UAAC----------------------------------------------------------UUUUGGA-------------CUACAUGCAGUUUCAU------------------------------------------UAGUGCAUUUUUAUUUGAUUUAAGCCAUAAAAUACAGAAGCGACU----------------------UGCG--------------------------------------------------AGAAGCUUUGGUGACUGAAAG----------------------------------------------------AUG-AA-AUUACUACAUACU
>URS0000D6711E_12908/1-161
UUUUAUUUUUCUUU------------------GGAC----------------------------------------------------AGGAAAGAUAAACUAAAAGGA-----CUACACGUCAAUUGAU-------------------------------------------------AGUGCUUUCAUAAGAAGCCAUAAAAUUCAACAGCGAUAAUUGGUAAC-------------UGAAAUAUU-----------------------------------GUGAA-UAU-UAAAGCUGUGGUGAUUUACUUUUA-------------------------------------------------AUU-AA-UUGGCUACAUGGC
>URS0000D69921_12908/1-183
UUCU-G-UCCUGGAGAA---------------UGUUAU----------------------------------------------UUUUCCUUGAGCAAGAAAAAUAAAUUAGGACUACACGUCAAUUAAU---------------------------------------UAGCACGUUAUUAAAAUUUAUUUUAAGUCAUAAAAUUCAACUUUGACAAUUAGUAGU-------------UGAAAUAUU-----------------------------------ACGAA-UUU-UGAAAAAGUGGUGGUUUACUUUUA-------------------------------------------------AUU-AA-UUGGCUACACAGG
>URS0000D6B2D3_12908/1-221
CUCAGCCAUACUC-------------------UAAC----------------------------------------------------GAGUGUUGCUGAG-------------CCACACGCCAAUUUAU---------------------------------------UAGCGCAUCAUUUAGAUUUAUUUUAAGCCAUAAAAUACAAUCGCAACAUUAAGUAAGGUUAAUUUUU---CCUUACGAGAAAAAAUUAAUUGCAAUAAAA----AAUAUUUACAACGAA-AUA-UGAAGCGACAGUGGAAGGUUCAGAAAUGAACUUUUUGAAAUG-------------------------------AUA-AA-CUGGCUAUAUCUU
>URS0000D67BBF_12908/1-206
CCUGGCC-------------------------AUUAGA--------------------------------------------------------GGCUGGG-------------CCACAUGUCAAUUUAU---------------------------------------UUGCACAUAUUUAAGUUUAUUUUAAGUCAGUAAAAUUCAACUUUGACAAUUAGUAAAGGGUUUCUUUUUUAGAAAAAAAGAAACUACUGUGGUAGA-----AAAAACUACAAUUGUGAA-AAU-UGAAAAAGUGGUGGCAGAUAAAAAUCUGAUAAUCG--------------------------------------GUA-AA-UUGGCUAAUCCCA
>URS0000D66135_12908/1-185
CCUGGCU-------------------------GAAA----------------------------------------------------------AGCUAGG-------------CCACAAGCUCUUUUAU------------------------------------------------UAGUGCCUUUUAAUAGGCUAGUAAAAUACAACUUUGAUAAUUAGUAGU-------------GAAA----------------------------------------AUGAA-ACU-UAAAAAAGUGGUGGCGAGGUUAUUGGAAAUGAUAAAUUCAUUUAAUAAACAAUUUCAAUAACUGAGAUAAUUGGUA-AA-AGAGCUAUUUCCA
>URS0000D68CBE_12908/1-135
CCUAGCU-------------------------UGG-----------------------------------------------------------AGCUAGG-------------CCACACGCCUCUUUAU------------------------------------------------UAGAACUCUUAAGUGAGUCAGUAAAAUUCAAUGGCGACAACUAGUAGUU------------GAAA-------------------------------------AUUAUGAA-CCU-UGAAGUCAUGGUGGCAAUCG-----------------------------------------------------GUA-AA-GAGACUAUCACUA
>URS0000D687B0_12908/1-167
CCUUUUUUC-UAAUAAUUUGUCUU--------AGG------------------------------------------GAGGCACUCUCCAAUGAACUAAGG-------------CUACAUGUCUGUUAAU-------------------------------------------------AGUGCUUUUUAAAAAAGCCAUAAAAUUCAAAAGUGACAAAUAGUAAU-------------GAAA----------------------------------------AUGAA-ACU-UGAAACUUUGGUGAUUUACUUUAA-------------------------------------------------AUU-AA-UAGACUACAUGUC
>URS0000D6C21F_12908/1-171
UCCUGAAGAUUUUUAUAUCUC-----------CUUGAGCAA---------------------------------------GAGAUAUAGAA-----UAGGA-------------CUACACGUCAAUUUAC---------------------------------------UAGCACAUUAUUUAGGUUUAUUUUAAGUCAUGAAAUUCAACUUUGACA----------------------GAAA--------------------------------------------------UGGAUAGGUGGUGAAAGAAAAUCUUUAGGAUUUUCAAAA----------------------------------GUA-AG-UUGGCUAUUUUAG
>URS0000D68575_12908/1-167
UCCUGGAGAGUUUUAUGUUUC-----------CCUGAGCAA---------------------------------------GAAACGUGAAAU-----AGGA-------------CUACACGCCAAUUUAC---------------------------------------UAGCACAUCAUUUAGAUUUAUUUUAAGUCAUAAAAUUCAGCUUUGACA----------------------AAAU--------------------------------------------------UGGAAAAGCGGUGAAAGAAAAUUAAAUUUUCAAAA--------------------------------------GUA-AA-UUGGCUAUCUUAG
>URS0000D6B44F_12908/1-196
CCUAGCUAUACUUUA-AAAUUAAUUC------CUCUU--------------------------------------GUUUUAAUUUAUAAAGUAUU-CUGGG-------------CCACACGCCAAUUUAU---------------------------------------UAAUAUAUCAUUUAGAUUUAUUUUAAGUUAUAAAAUACAACUGCAACAUUAAGUAAC-------------UUUC----------------------------------------GUGAA-AUA-UGAAGUGGUGGUGAAGGGUCUCUUGACUUUUUGAAAUG-----------------------------------AUA-AA-UUGGCUAUCUCUU
>URS0000D6C409_12908/1-139
CCUGGCUAUA----------------------CUAUAA-----------------------------------------------------UAUAGCUGGG-------------CUACAAGCCAAUUGCU------------------------------------------------------UAAGGAUAAAAUCCAUAAAAUACAACUGCGACAUUAAGUAAC-------------CUUAAAAA------------------------------------GUGAA-AUA-UGAAGUAGUGGUGACAUGAAA----------------------------------------------------AGU-AA-AUGGCUAGGCCUU
>URS0000D66FB1_12908/1-154
UCUUGGU-------------------------AUGAAA--------------------------------------------------------ACCAAGG-------------CUACAAGUUAGAUAUU-----------------------------------------------------AAGCUUCCAAUAGCGAUAAAAUUCAAUCACAACAUAUAGUAAU-------------GAUGAAGGAACCAAAAGUGAGCUGA-------------------GUGAA-AUA-UGAAGUGAUGGUGAUUUACUUUCA-------------------------------------------------UUU-AU-CUGACUAGUUGAG
>URS0000D6B07E_12908/1-156
UCUUAGUUUGAC--------------------CAUG-----------------------------------------------------GUUUAGCUAGGG-------------CCACACGCCUUUUGCU------------------------------------------------------UAUGCUCCUAGGGCGUCAAAUGCAAACACGACAUUAAGUAAAA------------AUUAGCUAUUAAGCAA----------------------A----UUUGAA-AUA-UGAAGUGUUGGUGGUUUUACUUUCA------------------------------------------------AGC-AG-AAGGCUACAUAGU
>URS0000D69FDF_12908/1-194
UCUUAGUUUGGC--------------------GUUUAU---------------------------------------------------GCCUUGCUAGGG-------------CCACACGCAUCUUGCU------------------------UAUGCCUGAAACCAAGAAAAUCCUGAAGGAUUUUGGAGAAAGGUAUCAAAUGCAAAAGCAACAUUAAGUACU-------------AAUGAGGGAACCGAAAGUGAGCUGA-------------------AGGAA-AUA-UGAAGCUUUGGUGAUUUUACUUUAG------------------------------------------------AGU-AG-GAUGCUACAUAGU
>URS0000D67D93_12908/1-134
UCCUGACUAUGCU-------------------UAAC----------------------------------------------------AGCAGAGUU-GGA-------------CUACACGUCAAUUCAC-----------------------------------------UAGUACAUUAAUAAUAUAAUUAAUGUCAUAAAAUACAGAAGUUUCU----------------------UGCG--------------------------------------------------AGAAACUUCAGUGAAGAUAAG----------------------------------------------------GUA-AA-UUGGCUAUAGUUU
>URS0000D6871B_12908/1-134
CCUAACCAU-----------------------UUG---------------------------------------------------------AUGGUUGGG-------------CCACACGUCAGUUUAU------------------------------------------UUAUCUAAGUUUAAGAUGAUUUAAAC-UAGAAUGCAAAAAUUUCU----------------------UACG--------------------------------------------------AGAAAUUUUGGUGAAGUCUUUGACU------------------------------------------GAAUUGGUA-UA-CUGGCUAAAAAUU
>URS0000D6ADF9_1046946/1-175
UCUAA-AGUUAUGUC-CUGA--CUAUA-----UAGA--------------------------------------UAUACUAUCAGUGAAGUAUAAGUUGGA-------------CUACAUGCCAGUUUAC----------------------------------------UAGUACAUCAUUAAUUUGAUUUUAAGUCAUGAAAUACAGAAGCAACA----------------------UUCG--------------------------------------------------UGAAGCUUCAGUGGCAAGAGUUAAUCUUUUGUGAUG-------------------------------------GUA-UU-CUGGCUAUAAGUU
>URS0000D69AEC_12908/1-177
CCUGGCCAU-----------------------GUUAAA------------------------------------------------------AUGGUUAGG-------------CCACACGCCUAUUAAU---------------------------------------------------UAUAUCUCAAAGGAGAUAUAAAAUACAACUAUAACAUUAAGUAUUUUAAAGGAAG---GUUGAACUUCAAGGAAACGUAG------------UUGCCUUACGAAGAA-AUA-UGAAAUAGUGGUGAUUUACUUUCA-------------------------------------------------AUU-AA-UGGGCUACAUCUU
>URS0000D67474_12908/1-148
UCUUAGU-UAGCAUA-----------------GUAA--------------------------------------------------UAUGCUUUGCUAGGG-------------CUACACGCCUAUUAAU----------------------------------------------------UAUAUCUCUUUGAGAUAUUAAAUUCAAUUAAAACAUUAAGUAAGC------------AAU----------------------------------------GCUGAA-AUA-UGAAUUAAUGGUGAUUUACUUUAA-------------------------------------------------GUU-AA-AAGGCUACAUAAC
>URS0000D6D008_12908/1-163
CCUAGCCA------------------------GAAA---------------------------------------------------------UGGCUGGG-------------CCACACGCCAGUUAAU--------------------------------------------AGUGUUUGUUAAUUUUAACAAACUAUGAAAUGCAAAUGUGACAUUUAGUAGU-------------GAUGAAGGAACUGAAAGUGAGCUGA-------------------GCGAA-AUA-UGAAGCCUUGGUGAUUUACUUUUA-------------------------------------------------AUU-AA-UUGGCUACAAAUU
>URS0000D6CFF4_12908/1-147
GUCUUAGUUAGC--------------------UUAAU----------------------------------------------------GCUAUACUAGGG-------------CUACAUGCUCAUUGAU--------------------------------------------------AGUGCUUUAAACUAAGCCAUAAAAUUCAACCACAACAUUUAGUAAGU------------UUAA---------------------------------------ACUGAA-AAG-UGAAGUGAUGGUGAUUUACUUUCA-------------------------------------------------AUU-AA-UGAGCUACAUAAC
>URS0000D6C8E6_12908/1-149
UCUUAGUU-AGC--------------------AAUAAUA--------------------------------------------------GCUAAACUAGGG-------------CUACAUGCUUAUUAAU------------------------------------------------AGCGCUUUCUAAAGAAAGCCAUAAAAUUCAAUCAUGACAUUAAGUACU-------------CUAGUU--------------------------------------AGGAA-AUA-UGAAAUGAUGGUGUUUAUUUUUA--------------------------------------------------AUU-AA-UGAGCUACAUAUC
>URS0000D681D3_12908/1-122
CCUAACC-------------------------UUGGGACU------------------------------------------------------GGUUAGG-------------CUACACGUUGAUUAAU--------------------------------------------------------------------UUCCAAUUCAAUCACAACAAUUAGUAAUU------------UCGC---------------------------------------AAUGAA-CUU-UGAAGUGAUGGUGAUUUACUUUCA-------------------------------------------------AUU-AA-UCAACUAUUUAUC
>URS0000D6CB9B_12908/1-151
CCUGGUCUUGCU--------------------UAU------------------------------------------------------AGUAUGACUGGG-------------CCACACGCUUAUUAAU--------------------------------------------------AGCACUCUUAAUUGAGUCAUGAAAUUCAAUCACAACAUUUAGUAAU-------------UAUUAUAUGAAU--------------------------------GUGAA-AAA-UGAAGUGAUGAUGAUUUAUUUUUA-------------------------------------------------AUU-AA-UGGGCUAUAUAUU
>URS0000D6AC8A_12908/1-160
CCUAGUCUUUAC--------------------CUAUAGA--------------------------------------------------GU-AAGACUGGG-------------CCACAAGCCAAUUAAU--------------------------------------------AGUGCCUUUAAAUUUUUAGAAGUCAUAAAAUUCAAUUACAACAAUUAGUAGU-------------UAUGAUAUGAAU--------------------------------GUGAA-AAU-UGAAGUAGUGGUGAUUUACUUUUA-------------------------------------------------AUU-AA-UUGGCUAAUGCCU
>URS0000D6B27B_12908/1-139
CCUAGU--------------------------CUUUA----------------------------------------------------------ACUAGG-------------CCACAAGCUAAUUAAU----------------------------------------------AGUAUUUGUUUUAAAACAAAUCAUAAAAUUCAACCACAACAAUUAGUAGG-------------CUAGUU--------------------------------------CUGAA-UCU-UGAAGUGGUGGUGAUUUACUUUUA-------------------------------------------------AUU-AA-UUAGCUAUAACCA
>URS0000D68221_12908/1-178
CCUAGCUAUACUUGU-----------------UUAAU-------------------------------------------------ACAAGU-UA-CUAGG-------------UCACAAGUCAGUUUAU---------------------------------------UAGCACAUUAUUAAGGUUUAUUUUAAGUCAUAAAAUUCAACCACAACAAUUAGUAGCG------------AUGAUUUGCUUAAAAGGGGUG----------------------UGUGAA-ACU-UGAAGUGGUGGUGGUAAUAAUUG--------------------------------------------------AUA-AA-UUGGCUACUUUUA
>URS0000D67FE5_12908/1-147
UCCUGA-CUAUGC-------------------UAU-----------------------------------------------------GCGUAGAUUAGGG-------------CUACACGUCAAUUUAU---------------------------------------CAGCACAUUGUUGAUUUUCAUUUUAAGUCAUAAAAUACAAAAGCGACA----------------------UCCG--------------------------------------------------UGAAGCUUUGGUGCAGGACUAUCCUGGUAAUAG----------------------------------------GUA-AA-UUGGCUAUAAGCA
>URS0000D6B201_12908/1-121
UCUGG---------------------------UAGC------------------------------------------------------------CCAGAA------------CUACAAGCCAGAUUAC---------------------------------------CAGCACAUUAUUUAGGUUUAUUUUAAGUCAUAAAA-ACAGAAGCCUCA----------------------UUCG--------------------------------------------------UGAUGCUUCGGUGAAUUGAAU----------------------------------------------------GUA-AA-AUGGCUACUUUGC
>URS0000D6C99C_12908/1-159
CUUAGUGAGAGGUA------------------AGA----------------------------------------------------UGCCUUAAACUAUGG------------CUACACGUCAGUUUAU---------------------------------------UAGCACAUUAUUUAGAUUUAUUUUAAGUUAUAAAAUACAGAAGUUUCU----------------------UGCG--------------------------------------------------AGGAAUUUCAGUGAAGAAAUUCGUUAUGAAUUUCCCAAUUG--------------------------------GUA-AA-UUGGCUACAUAAC
>URS0000D6BF4B_12908/1-175
CUUGGUUCUUUAUUUAU-UUUUGU--------CCUGAA---------------------------------------GCACUAUAUAGAAU-AGAAACAGGA------------CUACAUGCCAAUUUAU---------------------------------------UAGCACAUUAUUUAAGUUUAAUUUAAGUCAUAAAAUACAGAAAUUUCU----------------------UACG--------------------------------------------------AGAAAUUUCGGUGAUAGAAUUAAAAAUUCUUAAUUG-------------------------------------AUA-AA-UUGACUAUAUAAU
>URS0000D65C12_12908/1-145
CCUAACC-------------------------AUAU----------------------------------------------------------GGUUAGG-------------CCACACGUCAGUUUAU---------------------------------------UACGACUUUAUUUAGAUUUAUUUUAAGUCAUAAAAUACAGAAAAUUCU----------------------UACG--------------------------------------------------AGAAUUUUCAGUGAACAGAAUCUA--------------------------------GGAGAUUCUGCGAAUUGAUA-AA-UUGGCUACAACGU
>URS0000D67486_12908/1-172
CCUAACC-------------------------AUUU----------------------------------------------------------GGUUAGG-------------CCACACGUCAAUUUAU---------------------------------------UAAGGCAUUAUUAAAAUUUAUUUUAAGCUAUAAAAUUCAAAAAUUCCU----------------------UGCG--------------------------------------------------AGGAAUUUUGGUGUGCAGGUAAAUCCUGCUUUGUGCAAGCAAGAUUCUUGACAUGAGGUAAUCAUGAG-----AUA-AA-UUGGCUAUAAGUU
>URS0000D6D016_12908/1-145
UCUUAACU------------------------AAUGAUCUGG---------------------------------------------------AGUU-GGA-------------CUACACGUUAAUUUAU----------------------------------------UAGCACAUUGUUUAGUUUAUUUUAAGUCAUAAAAUACAGAAAUUCCU----------------------UGCG--------------------------------------------------AGGAAUUUCAGUGAAGGAACUUUGUUCCCCAAUUG--------------------------------------AUA-AA-UUAGCUAUAAGUA
>URS0000D6A944_12908/1-152
UCCUGACU--CUCU------------------AAAU---------------------------------------------------AGAGUAAGUUAGGG-------------CUACACGCCAGUUUAU---------------------------------------UAGCACUUUAUUUAAAUUUAUUUUAAGUCGUGAAAUACAGAAAUUUCU----------------------UACG--------------------------------------------------AGGAAUUUCCGUGAAAAGAAUUUGCUCUCUUAAUUG-------------------------------------AUA-AA-UUGGCUAUAAGCA
>URS0000D67353_12908/1-153
UCCAGGCAA-----------------------GAACA-------------------------------------------------------UUGUCUGGG-------------CCACACGUCUUCCAAU----------------------------------------CUGAACGCAUUCAUUAUUUAGCGUUCGGGUGCAAUACAGCCGCAACACUGAGUAGCGU-----------GAUA--------------------------------------GCGUGAAAUCG-UGAAGCGGCAGUGGUUUAUUUCG--------------------------------------------------GUU-GG-AAGACUACCCGGU
>URS0000D6CBD0_12908/1-186
UUUUAUACUUCUUUCUUUUU------------GUAUUUACUGUCCCA----------------------------------GCUGCGAAAGUGGCUUGGAA-------------CUACACGCUCUUUCAC-------------------------------------------------GAAGACAACCAAAGUUGUCAUAAAAUACAGCUUCAACUUGA----UGCA-CAAAUGUGA-UGGUCU--------------------------UUACAUUUCUUGCA-------CUGAAGGGGCAGUGAAUUCGUAA---------------------------------------------------GUG-GA-AGGGCUACUCAGG
>URS0000D664E7_12908/1-126
GUCCCAGCUUA---------------------AAAA------------------------------------------------------UAAGCUUGGAU-------------CUACAUGCCCUUUCAC--------------------------------------------------CAAGGUAGCUAAGCUAUCAUAAAAUACAGCUCCAACA----------------------GCAA--------------------------------------------------UGAAGGUGCAGUGAAUUUAAUAAAA------------------------------------------------GUG-AA-AGAGCUACUGGUU
>URS0000D661A2_12908/1-151
GUCCCAGCUUA----AUGUUUUAUCU------AAAA---------------------------------------AGAUAAAGCAAAAAAUAAGUUUGGAU-------------CUACAUGCGCUUUCAC--------------------------------------------------UACGGGAGCAUCGCUCUCAUAAAAUACAGCCUCAACA----------------------GCAA--------------------------------------------------UGAAGGGGCAGUGAAUAUUAUUAA-------------------------------------------------GUG-AA-AGAGCUACUGGUU
>URS0000D65820_12908/1-174
UUCUUUAAUGAGC---CUUACCAUCAUUUCUUUUCA---------------------------------AAGGAUUU-UGGUAAACAUGCUU-----GGAAG------------UUACACGCUCUUUCAC-------------------------------------------UACGACUUUAUUUAUUUAUGAAGUUAUAAAAUACAGCUUCGACU----------------------UGAUGCUUAGCAC-----------------------------------------UGAAGAAGCAGUGAUAAUAAAAA--------------------------------------------------GUG-AA-AGAGCUAUUGAGG
>URS0000D6A450_12908/1-154
UCUUGAU-UUACACUGCA--------------GUU------------------------------------------------UGCAGUGUUUUAUCUGGG-------------CUACACGCUUUUUUAC------------------------------------UAGUGCAGUGUAAUGCUUUCAAGCAACCUGUCUUAAAAUACAACUGCAACAC---------------------CUAAUAU---------------------------------------------G-UGAAGCAGUGGUGAUUAAUUAA---------------------------------------------------GUA-AA-AAAGCUACAGGGU
>URS0000D698A3_12908/1-202
CCUAGCUUAUUGU---UUAGAGGUCUGUCU--CCCA-----------------------------------AGACAGACUAAUGAAGGGCAGUAACUUGGG-------------CUACACGCUUACCCAU------------------------------------------------AAUGUAGCAAAAGUGCUACAAUAAAAUACAAUGGCGAUAGUUAGUAGC-------------UAUAAAAGGUGUGUGGGAAGCCCUUUC-----------------GCGAA-UAU-UGGAGCCAUGGUGGAUAAAUAAUU-------------------------------------------------AUG-GA-UAAGCUAGCCGGU
>URS0000D69944_12908/1-159
UCCUAGCUUUUCC-----UUAUGUGGUU----UUCAUUUUU--------------------------------GAUCAUGUAAGAAAUGGAGUAGCUUGGAA------------CUACACGUCCUUUCAC-------------------------------------------------UAUGAGAACUUUUGUUCCUAUAAAAUACAACCAUGACA----------------------GAAA--------------------------------------------------UGAACUGGUGGUGAAAAUACAU---------------------------------------------------GUG-AA-AGGGCUAUAGCGG
>URS0000D67C2E_12908/1-147
UCUCAGCUGCUUCAUU----------------UAUGAAGC---------------------------------------------AAUGAAGUAGCUUGGAA------------CUACACGUCAUUUCAC--------------------------------------------------UAUGACAGUAUAACUGUUAUAAAAUACAAUCACAACAC---------------------CUAUUGC---------------------------------------------G-UGAAGUGGUGGUGGUCUUUCAAGAAG-----------------------------------------------GUG-AA-AUGGCUACUUAUG
>URS0000D6D131_12908/1-139
CCUAG-CU-AACUGCACA--------------ACAAGGA--------------------------------------------UGUGUGGGGCAGACUAGG-------------CUACACGUCCUUUCAC---------------------------------------------------UAGGGCAAGAAAUUGCUAUAAACAACAACUACAACA----------------------GAAA--------------------------------------------------UGAAGUAGCGGUGAUUAGAAUACA-------------------------------------------------GUG-AA-AGGGCUACUCUUG
>URS0000D6CFE9_12908/1-147
CCAAGUUG-CUUAUCUCUGAGU----------AGAGUA-----------------------------------------AGUUGGAGA--AGUUAGCUUGGA------------CUACAUGCCCUUUCAC--------------------------------------------------UAUGGCAACCUAGUUGCUAUUAAAUACAACCAUGACA----------------------GAAA--------------------------------------------------UGAAUUGGCGGUGAAUUAAUUAAA-------------------------------------------------GUG-AA-AGAGCUACUCUUG
>URS0000D6D363_12908/1-201
CUAGCAUAUU--GUUUGG-AGAAUUAUUCU--CCU------------------------------------AGAAUAAUUUGAUGAAGCGUAAUAU-CUGGGG-----------UUACACGCUUAUUUGU--------------------------------------------------AAUGCAACAAAAGUUGUUAUAAAAUACAACAGCAAUAGUUGGUAGCUAUAAAAGG----CGUGUGGGAAGC-----------------------CCUUUC---GCGAA-UAC-UAAAGUUGUGGUGACAAAAAAAAUU------------------------------------------------AUU-AG-UAAGCUAACUUUG
>URS0000D68D87_12908/1-199
CUAGCGUAUUAUUU---GGAAGGUUUCUCU--ACCC-----------------------------------AGAGAAAACUAAUGAAGGAUGGUAC-CUGGA------------CUACACGCUUAUCCAU---------------------------------------------------AAUACAGCUUUGCUGUAAUAAAAUACAAUAGCAAUAAUUAGUAACGCUAAAAGGUGU-GUGGGAA-------------------------GC-CCUUU---UGUGAA-AAU-UAGAGUUAUGGUGGAUAAAUAAUU-------------------------------------------------AUG-GG-UAAGCUAGCUGGU
>URS0000D69D00_12908/1-198
CUAGCAUAUUAUUU---GGAGAAUUAUUUU--CCU------------------------------------AAAAUAUUUUUAUGAAAAAUAGUAUCUUGGG------------CUACACGCUUAUACAU---------------------------------------------------AAUGCAACGUUAUUGCUAUAAAAUACAACAGCGAUAGUCAGUAGCUAUAAAAGGUGU-GUGGGAA-------------------------AC-CCUUU---CGCGAA-UAC-UAAAGUUGUGGUGAAGAAAAAUU--------------------------------------------------GUG-GA-UAAGCUAGCUGGU
>URS0000D67862_12908/1-132
CCUAGCUAUCCGUUG-----------------UUU---------------------------------------------------CAAUG-UGAGCUAGG-------------UUAUACGCUCCCUUAU--------------------------------------------------GACGGCAAUAUAAUUGUCAUAAAAUACAACUACGACA----------------------GCAA--------------------------------------------------UGAAGUAGUGGUGGGUUAACUUUAA------------------------------------------------GUA-GA-GGAGCUAUGCUCU
>URS0000D6C118_12908/1-155
UUAGUUUCUU--UUAUGUCCUGGC--------AACC-----------------------------------------GAAAGGAAACUUUUGAGAAGCUGGG------------UUAUACGCUCUUUUAC--------------------------------------------------GAGGGCAACUUAGUUGUCAUAAAAUACAACCAUAACCC---------------------CUAAUGU---------------------------------------------G-UGAAAUGGUGGUGAGAACCAAUAA-------------------------------------------------GUG-AA-AGAGCUAUGCUCU
>URS0000D6B98D_12908/1-137
CCUGGCAAC-CGUAG-----------------GUGA--------------------------------------------------CUAUGAGAAGCUGGG-------------UUAUACGCACUUCCAC-------------------------------------------------GAUAGACAACUAUGUUGUCAUAAAAUACAGCCAUGACAC---------------------CCAAUGU---------------------------------------------G-UGAAAUGGUGGUGAAGAAAAUAA--------------------------------------------------GUG-GA-AGAGCUAUGCUUU
>URS0000D68A1A_12908/1-134
CCUGGCAAC-CGUG------------------GAAA---------------------------------------------------CAUGAGAAGCUGGG-------------UUAUACGCUCUUUUAC--------------------------------------------------GAGGGCAACAAUGUUGUCAUAAAAUACAACCAAGACAC---------------------CUAAUGU---------------------------------------------G-UGAAUUGGUGGUGCACAUAAUAA--------------------------------------------------GUG-AA-AGAGCUAUGCUCU
>URS0000D68015_12908/1-148
UCC--UAGCUC-GUGCAUUC------------CAAUUGUU-----------------------------------------GAAUGCAAAGAGUAGCUGGAA------------CUACACGCCUUUCCGC---------------------------------------------------UAUGGCAGCUUGCUGCUAUAAAAUGCACCCAUGACAG---------------------CUAAUGC---------------------------------------------C-UGAAAUGGUGGUGAAAACAGAAA--------------------------------------------------GUG-GA-AUGGCUACUUAGG
>URS0000D65AFA_12908/1-143
UCCCAGCUA-------AUUCCA----------GCAA-------------------------------------------UGGAAUUAUAGAAUGGCUUGGAA------------CUACACGCUCUACUGC---------------------------------------------------UAUGGCAACUUGUUGCUAUAAAAUUCAACCACAACAG---------------------CUAACGC---------------------------------------------C-UGAAGUGGUGGUGACGUAAAAA---------------------------------------------------GUG-GU-AGGGCUACUUGGA
>URS0000D6B10A_12908/1-134
CCUAGU-AAC--CGUU----------------UUU--------------------------------------------------AACGAAGUAAGCUAGG-------------CUAUACGCUUAUUUGC---------------------------------------------------UAUGGGAGCUUGCUCUUAUAAAAUACAAUCACAACAC---------------------CUAAUGU---------------------------------------------G-UGAAGUGAUGGUGAAAACAAGAA--------------------------------------------------GUA-AA-UAGGCUAACUUGG
>URS0000D6B26B_12908/1-134
CCUAGU-AAC--CGU-----------------UUUU--------------------------------------------------ACGAAGUAAGCUAGG-------------UUACACGCUUAUUUAC--------------------------------------------------UAUGGGAGCCCAGCUCUUAUAAAAUACAGUCACGACA----------------------UCUAAUGUG---------------------------------------------UGAAGUGGUGGUGAUAACAAGAA--------------------------------------------------GUA-AA-UAAGCUAACUUGG
>URS0000D698DF_12908/1-132
CUAGCAAAC--CGU------------------UUUU---------------------------------------------------ACGAAGUCAGCUAG-------------UUAUACGCUUAUUUAC---------------------------------------------------UAUGGGAGUUUACUCUUAUAAAAUGCAAUCACGACAC---------------------CUAAUGU---------------------------------------------G-UGAAGUGGUGGUGAAAACAAGAA--------------------------------------------------GUA-AA-UAAGCUAACUUGG
>URS0000D6A4DE_12908/1-155
UUCUAGC-CUUGCGAUAUUCUUU---------GAAA------------------------------------------AGAGAAUAUGGUGAGUGCUUGGG-------------CUACAUGCUCUCUUGC------------------------------------------UAGGGUUGUGUUGUUAGAAUGCAAUCAUAAAAUACAACUGCGACA----------------------UGCG--------------------------------------------------UGAAGUGGUGGUGAUAUAACAAA--------------------------------------------------GUA-AG-AGAGCUACUGAGG
>URS0000D673E6_12908/1-169
UUGAGC-CUU-GCCAUCGUUCCU---------CUACAA----------------------------------------AGGAUUU-UGGAGAAGUGCUUGGGAG----------UUACACGCUUUUUCAC---------------------------------------UACGGUUUUAUUCUAAUCAGAAUGAAAUCAUAAAAUACAGCUCCGACU----------------------UGAUGCUUCGCAC-----------------------------------------UGAAGGGGCAGUGAAUUCAUGA---------------------------------------------------GUG-AA-AAGGCUAAUUGCG
There are no chains in PDB that we map to Rfam family RF03019.
Jump to results for:
- Loop 1HL Column numbers: 14-88
- Loop 2IL Column numbers: 125-126, 372-374
- Loop 3IL Column numbers: 127-128, 369-371
- Loop 4IL Column numbers: 130-174, 314-367
- Loop 5IL Column numbers: 174-176, 312-314
- Loop 6IL Column numbers: 182-209, 302-306
- Loop 7IL Column numbers: 213-216, 295-298
- Loop 8IL Column numbers: 217-218, 292-294
- Loop 9IL Column numbers: 220-225, 285-290
- Loop 10HL Column numbers: 226-284
Loop 1 Hairpin loop
Column numbers: 14-88
Scored sequences and counts
-------------------GAAA---------------------------------------------------- 3
-------------------UAAC---------------------------------------------------- 3
-------------------AAUG---------------------------------------------------- 2
-------------------UAU----------------------------------------------------- 2
---CUUACCAUCAUUUCUUUUCA---------------------------------AAGGAUUU-UGGUAAACAU 1
-------------------CAGGUAAAGUACCGCACAGCUUGCGGUUGAGAAUGCC------------------- 1
UUUGG-AGAAUUAUUCU--CCU------------------------------------AGAAUAAUUUGAUGAAG 1
---UUAGAGGUCUGUCU--CCCA-----------------------------------AGACAGACUAAUGAAGG 1
AUC----GAGUUCGUUC--CGACA----------------------------------GAAUGGAAAUUAAAGAC 1
G-AGAUAUCUAUUUC----CCAAUA-----------------------------------GACGUUGAUGAAAGC 1
U---GGAAGGUUUCUCU--ACCC-----------------------------------AGAGAAAACUAAUGAAG 1
-----UUAUGUGGUU----UUCAUUUUU--------------------------------GAUCAUGUAAGAAAU 1
G-CUUGG-AGGUUUUU---CCAA------------------------------------GAAAAUCUGUGAAGAC 1
U---GGAGAAUUAUUUU--CCU------------------------------------AAAAUAUUUUUAUGAAA 1
UAUCAAUUAACACCG----ACUA-------------------------------------CGGAGUACCAAGAUA 1
UAUCUUCUUUUCAG-----UUCUUU------------------------------------CUUAACCUGCCCCA 1
CCUGGAAGCUC--------CUCAUCUUUUU----------------------------------GAGCAAUUGAU 1
GGCGAGUG-CUGCA-----UAACC-------------------------------------UGCAACCAGUU-CC 1
UCU---AAAACUUAU----CCCA-------------------------------------AUAAGUCAAUGAAGA 1
UA-AAAUUAAUUC------CUCUU--------------------------------------GUUUUAAUUUAUA 1
GAAUCUA------------UGACAACACGACCCU----------------------------------UAGGUUC 1
UC-CUGA--CUAUA-----UAGA--------------------------------------UAUACUAUCAGUGA 1
UCUUUUU------------GUAUUUACUGUCCCA----------------------------------GCUGCGA 1
--AUGUUUUAUCU------AAAA---------------------------------------AGAUAAAGCAAAA 1
UUAU-UUUUGU--------CCUGAA---------------------------------------GCACUAUAUAG 1
UAUGUCCUGGC--------AACC-----------------------------------------GAAAGGAAACU 1
AUUGCCCAGAA--------GUAU-----------------------------------------UUCUU-GCAUG 1
CAUCGUUCCU---------CUACAA----------------------------------------AGGAUUU-UG 1
UAAUUUGUCUU--------AGG------------------------------------------GAGGCACUCUC 1
UAUAUCUC-----------CUUGAGCAA---------------------------------------GAGAUAUA 1
UAUGUUUC-----------CCUGAGCAA---------------------------------------GAAACGUG 1
GAUAUUCUUU---------GAAA------------------------------------------AGAGAAUAUG 1
UCUCUGAGU----------AGAGUA-----------------------------------------AGUUGGAGA 1
UUGACAAGUA---------AAAU------------------------------------------UACUUGAAAA 1
C------------------CCUGAAAAAUAUCAAUGAAA-----------------------------------G 1
UGCAUUC------------CAAUUGUU-----------------------------------------GAAUGCA 1
UAACU--------------UGAUUUGUGAU----------------------------------------AGUUA 1
---AUUCCA----------GCAA-------------------------------------------UGGAAUUAU 1
UGCUUCUU-----------UAU---------------------------------------------GAGAAGUA 1
CC-UGAUU-----------UCG---------------------------------------------AAUCAGGG 1
AUCAU--------------AAAUUCAC-------------------------------------------AU-AU 1
CUUG---------------CAUGAGCAA-------------------------------------------CAAG 1
GCACA--------------ACAAGGA--------------------------------------------UGUGU 1
UUUC---------------CAUGAGGAA-------------------------------------------GAAA 1
C-GCC--------------AAAAAA---------------------------------------------GGUAG 1
AAGUU--------------UAAG-----------------------------------------------GACUU 1
AGAA---------------UGUUAU----------------------------------------------UUUU 1
AUU----------------UAUGAAGC---------------------------------------------AAU 1
CCCAA--------------AUA------------------------------------------------UUGGG 1
CUGCA--------------GUU------------------------------------------------UGCAG 1
-------------------CCAUAUUAAAAA-------------------------------------------- 1
G-GC---------------UUAAA-----------------------------------------------GCGC 1
-------------------AGAAGUAAUGA--------------------------------------------- 1
-------------------AAUGAUCUGG---------------------------------------------- 1
GCU----------------GAUA-------------------------------------------------AGC 1
-------------------CCUGAGCAA----------------------------------------------- 1
GU-----------------UUAAU-------------------------------------------------AC 1
GUU----------------UUU--------------------------------------------------AAC 1
-------------------GAAAACAA------------------------------------------------ 1
-------------------UUGGGACU------------------------------------------------ 1
AG-----------------GUGA--------------------------------------------------CU 1
CU-----------------CUAG--------------------------------------------------AG 1
GU-----------------UUUU--------------------------------------------------AC 1
UA-----------------GUAA--------------------------------------------------UA 1
-------------------AAUAAUA------------------------------------------------- 1
-------------------CUAUAGA------------------------------------------------- 1
UG-----------------UUU---------------------------------------------------CA 1
-------------------AUGAAA-------------------------------------------------- 1
-------------------AUUAGA-------------------------------------------------- 1
-------------------CUAUAA-------------------------------------------------- 1
-------------------GCGGAA-------------------------------------------------- 1
-------------------GUUAAA-------------------------------------------------- 1
-------------------GUUUAU-------------------------------------------------- 1
G------------------GAAA---------------------------------------------------C 1
U------------------AAAU---------------------------------------------------A 1
U------------------UUUU---------------------------------------------------A 1
-------------------AAACC--------------------------------------------------- 1
-------------------CUUUA--------------------------------------------------- 1
-------------------GAACA--------------------------------------------------- 1
-------------------GUAAA--------------------------------------------------- 1
-------------------UUAAU--------------------------------------------------- 1
A------------------AGA----------------------------------------------------U 1
C------------------UAU----------------------------------------------------G 1
U------------------GGAC---------------------------------------------------- 1
-------------------AAAA---------------------------------------------------- 1
-------------------AUAU---------------------------------------------------- 1
-------------------AUUU---------------------------------------------------- 1
-------------------CAUG---------------------------------------------------- 1
-------------------GCAA---------------------------------------------------- 1
-------------------GGAA---------------------------------------------------- 1
-------------------UAAU---------------------------------------------------- 1
-------------------UAGC---------------------------------------------------- 1
-------------------UGGG---------------------------------------------------- 1
-------------------GUA----------------------------------------------------- 1
-------------------UGG----------------------------------------------------- 1
-------------------UGU----------------------------------------------------- 1
-------------------UUA----------------------------------------------------- 1
-------------------UUG----------------------------------------------------- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_56334.1
Basepair signature:
|
18.27 | -5235.65 | 5 | 5 |
Mini UNCG |
| 2 |
Motif group HL_70782.2
Basepair signature:
|
14.42 | -5126.10 | 5 | 5 |
|
| 3 |
Motif group HL_53890.2
Basepair signature:
|
12.50 | -4337.61 | 5 | 4.5 |
|
| 4 |
Motif group HL_32346.4
Basepair signature:
|
12.50 | -5247.85 | 5.5 | 5.5 |
|
| 5 |
Motif group HL_37824.7
Basepair signature:
|
11.54 | -3701.07 | 3.5 | 4 |
GNRA |
| 6 |
Motif group HL_75660.5
Basepair signature:
|
11.54 | -5840.91 | 4.5 | 4 |
|
| 7 |
Motif group HL_04783.2
Basepair signature:
|
10.58 | -3841.58 | 4.5 | 4 |
|
| 8 |
Motif group HL_82710.2
Basepair signature:
|
10.58 | -4757.61 | 5.5 | 5 |
|
| 9 |
Motif group HL_38901.2
Basepair signature:
|
10.58 | -4939.52 | 4.5 | 4 |
tRNA D-loop |
| 10 |
Motif group HL_48778.2
Basepair signature:
|
10.58 | -5150.52 | 5 | 5.5 |
Mini UNCG |
Loop 2 Internal loop
Column numbers: 125-126, 372-374
Scored sequences and counts
AU*A-U 27
UU*A-A 18
GU*A-U 10
AU*G-U 7
GU*A-C 4
AU*A-A 3
GA*U-C 3
UU*G-A 3
CC*G-G 2
CU*A-G 2
GC*G-C 2
GC*G-U 2
UC*G-A 2
UG*C-A 2
AC*GCA 1
GU*AUC 1
AA*U-U 1
AC*A-U 1
AC*G-G 1
AG*U-U 1
AU*A-C 1
AU*C-U 1
CC*A-G 1
CU*G-G 1
GA*A-A 1
GC*C-U 1
GU*A-A 1
GU*G-C 1
GU*U-C 1
UA*U-A 1
UG*C-G 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_84476.1
Basepair signature:
|
94.23 | 21.67 | 3 | 2 |
Multiple bulged bases |
| 2 |
Motif group IL_07039.3
Basepair signature:
|
92.31 | 11.37 | 2 | 1 |
Major groove platform |
| 3 |
Motif group IL_42771.1
Basepair signature:
|
88.46 | 15.17 | 3 | 1 |
Multiple bulged bases |
| 4 |
Motif group IL_00225.13
Basepair signature:
|
75.00 | 0.69 | 1 | 1 |
Single bulged G |
| 5 |
Motif group IL_81831.1
Basepair signature:
|
69.23 | 13.30 | 4 | 1 |
Intercalated cWS |
| 6 |
Motif group IL_73452.2
Basepair signature:
|
68.27 | 12.88 | 4 | 1 |
|
| 7 |
Motif group IL_66635.5
Basepair signature:
|
64.42 | 6.01 | 3 | 1 |
Major groove intercalation |
| 8 |
Motif group IL_33761.2
Basepair signature:
|
64.42 | 0.08 | 4 | 1 |
|
| 9 |
Motif group IL_26793.1
Basepair signature:
|
63.46 | 7.14 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_90729.1
Basepair signature:
|
63.46 | 2.65 | 2 | 1 |
Single stack bend |
Loop 3 Internal loop
Column numbers: 127-128, 369-371
Scored sequences and counts
UU*A-A 39
UC*G-A 18
UA*U-A 14
CC*G-G 6
UG*U-A 4
CC*GUG 2
CU*A-G 2
UC*A-A 2
UG*C-A 2
UU*A-U 2
UU*G-A 2
CC*GCG 1
UC*GUA 1
AC*G-G 1
AU*A-U 1
CA*U-G 1
CU*G-G 1
UC*G-G 1
UC*G-U 1
UU*A-G 1
UU*C-U 1
UU*U-A 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_84476.1
Basepair signature:
|
95.19 | 26.52 | 4 | 2 |
Multiple bulged bases |
| 2 |
Motif group IL_07039.3
Basepair signature:
|
95.19 | 16.14 | 2 | 1 |
Major groove platform |
| 3 |
Motif group IL_42771.1
Basepair signature:
|
94.23 | 23.00 | 2 | 1 |
Multiple bulged bases |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
92.31 | 21.00 | 3 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_00225.13
Basepair signature:
|
90.38 | 4.95 | 2 | 1 |
Single bulged G |
| 6 |
Motif group IL_66635.5
Basepair signature:
|
87.50 | 13.62 | 3 | 1 |
Major groove intercalation |
| 7 |
Motif group IL_73452.2
Basepair signature:
|
85.58 | 19.84 | 4 | 1 |
|
| 8 |
Motif group IL_26793.1
Basepair signature:
|
83.65 | 12.92 | 2 | 1 |
Single stack bend |
| 9 |
Motif group IL_90729.1
Basepair signature:
|
83.65 | 11.65 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_16386.4
Basepair signature:
|
83.65 | 8.30 | 5 | 1 |
|
Loop 4 Internal loop
Column numbers: 130-174, 314-367
Scored sequences and counts
U---------------------------------------UAAGG*AAAUCCUGCUUUGUGCAAGCAAGAUUCUUGACAUGAGGUAAUCAUGAG-----A 1
U---------------------------------------UAGUA*AGGAGAAAUCCUUAGACUUGGAGACUCUUUUUUAAGAGAG-------------A 1
C---------------------------------------AGUGC*AGGAGUCUCUG---GUUUCGGGGCAUCCCGUGCUUCUUUAA------------G 1
U---------------------------------------UAGUG*GAAAUUAUAUUAAUAAUUUCUUGAUUAGGAGUGAAAUG---------------G 1
U---------------------------------AGAAGAAAAUG*CAAGUUAUCUUGGUCUGUUUG--------------------------------G 1
U---------------------------------------UAGCG*CAGAAAUGAACUUUUUGAAAUG-------------------------------A 1
C------------------------------------------UA*GCGUUGGUGCAAACUGACGUAACA-----------------------------G 1
U---------------------------------------UACGA*UCUA--------------------------------GGAGAUUCUGCGAAUUGA 1
U---------------------------------------UAGCA*UCGUUAUGAAUUUCCCAAUUG--------------------------------G 1
U------------------------UAUGCCUGAAACCAAGAAAA*UUUAG------------------------------------------------A 1
C---------------------------------------UAGCA*AUCUUUAGGAUUUUCAAAA----------------------------------G 1
U---------------------------------------UAAUA*UCUUGACUUUUUGAAAUG-----------------------------------A 1
U---------------------------------------UAGCA*UAAAAAUUCUUAAUUG-------------------------------------A 1
U---------------------------------------UAGCA*UUUGCUCUCUUAAUUG-------------------------------------A 1
C----------------------------------------UAGU*UUAAUCUUUUGUGAUG-------------------------------------G 1
C---------------------------------------UAGCA*AUUAAAUUUUCAAAA--------------------------------------G 1
U---------------------------------------UUGCA*AAAAUCUGAUAAUCG--------------------------------------G 1
U----------------------------------------UAGC*UUUGUUCCCCAAUUG--------------------------------------A 1
U---------------------------------------CAGCA*AUCCUGGUAAUAG----------------------------------------G 1
U----------------------------------------AGUG*AAAUCUGUUUUA-----------------------------------------G 1
C---------------------------------------CAGUA*UAAGUUAAAG-------------------------------------------A 1
U----------------------------------------AGUG*GAAGGCUUGA-------------------------------------------U 1
A--------------------------------------UUAAGA*UAAUUUU----------------------------------------------U 1
U------------------------------------------UU*UGACU------------------------------------------GAAUUGG 1
U------------------------------------CACGCCAA*CAAGG------------------------------------------------G 1
U-----------------------------------CAUGACAUA*AACG-------------------------------------------------G 1
U------------------------------------CACGGCAA*AACG-------------------------------------------------G 1
C--------------------------------------UACGGC*AAAA-------------------------------------------------G 1
C------------------------------------UAGUGCAG*AA---------------------------------------------------G 1
C-------------------------------------UACGACU*UG---------------------------------------------------G 1
U---------------------------------------UAGCA*UUUA-------------------------------------------------A 1
U-----------------------------------------AAU*UAAGU------------------------------------------------A 1
U---------------------------------------UAGCA*UUG--------------------------------------------------A 1
C---------------------------------------UACGG*GA---------------------------------------------------G 1
C---------------------------------------UAGCA*CA---------------------------------------------------G 1
U----------------------------------------CUGA*UCG--------------------------------------------------G 1
C---------------------------------------CAGCA*U----------------------------------------------------G 1
C-------------------------------------------U*CUAG-------------------------------------------------G 1
C------------------------------------------UA*AAA--------------------------------------------------G 1
U------------------------------------------AA*AUU--------------------------------------------------A 1
C-------------------------------------------U*AAA--------------------------------------------------G 1
C-----------------------------------------UAG*G----------------------------------------------------G 1
U------------------------------------------UA*G----------------------------------------------------A 1
Omitted sequenced and counts
U--------------------------------------------*UUUA-------------------------------------------------A 5
U--------------------------------------------*UUCA-------------------------------------------------A 3
C--------------------------------------------*GAA--------------------------------------------------G 3
C--------------------------------------------*AGCA-------------------------------------------------G 2
C--------------------------------------------*UAAG-------------------------------------------------G 2
U--------------------------------------------*AAUU-------------------------------------------------A 2
C--------------------------------------------*UAA--------------------------------------------------G 2
C--------------------------------------------*AA---------------------------------------------------G 2
U--------------------------------------------*A----------------------------------------------------A 2
U--------------------------------------------*UAUUGGAAAUGAUAAAUUCAUUUAAUAAACAAUUUCAAUAACUGAGAUAAUUGG 1
UAGCGUCUGAAAAGACCAUGUGAAAGUUCAAUGAACUUUUAUAUG*-----------------------------------------------------A 1
U--AGUGCUUAUGUGUCAAAAACUUUUAGUUUUUGAGCACUAUCA*-----------------------------------------------------A 1
U--------------------------------------------*GAACAUUGUUCGGAAGCAUAGGGAAUAAACUCCUUUGCUUA------------A 1
U--------------------------------------------*AACUUAGUGUAUCG---------------------------------------A 1
U-------------------------------------UAAGGCA*-----------------------------------------------------A 1
A--------------------------------------GAUGGC*-----------------------------------------------------G 1
C--------------------------------------------*AAGAAG-----------------------------------------------G 1
U--------------------------------------UAAGGC*-----------------------------------------------------A 1
C--------------------------------------------*UAAAA------------------------------------------------G 1
C---------------------------------------UAGUA*-----------------------------------------------------G 1
U--------------------------------------------*AAAAA------------------------------------------------A 1
U--------------------------------------------*AAAUU------------------------------------------------A 1
U--------------------------------------------*UUUAA------------------------------------------------G 1
U--------------------------------------------*UUUCA------------------------------------------------A 1
U---------------------------------------AGUGC*-----------------------------------------------------A 1
U---------------------------------------UAGCA*-----------------------------------------------------A 1
U---------------------------------------UAGCG*-----------------------------------------------------A 1
C--------------------------------------------*AUAA-------------------------------------------------G 1
C--------------------------------------------*UAAA-------------------------------------------------G 1
C--------------------------------------------*UACA-------------------------------------------------G 1
C--------------------------------------------*UUAA-------------------------------------------------G 1
U--------------------------------------------*AAAG-------------------------------------------------A 1
U--------------------------------------------*UUAA-------------------------------------------------A 1
U--------------------------------------------*UUAA-------------------------------------------------G 1
U--------------------------------------------*UUCA-------------------------------------------------U 1
C--------------------------------------------*AAA--------------------------------------------------G 1
U--------------------------------------------*AAG--------------------------------------------------A 1
U--------------------------------------------*AUU--------------------------------------------------G 1
U--------------------------------------------*UUA--------------------------------------------------A 1
C--------------------------------------------*AU---------------------------------------------------G 1
C--------------------------------------------*GU---------------------------------------------------G 1
U--------------------------------------------*GG---------------------------------------------------A 1
C--------------------------------------------*G----------------------------------------------------G 1
U--------------------------------------------*G----------------------------------------------------A 1
U--------------------------------------------*G----------------------------------------------------G 1
U--------------------------------------------*-----------------------------------------------------A 1
U--------------------------------------------*-----------------------------------------------------G 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_41344.1
Basepair signature:
|
4.65 | -5872.66 | 11 | 9 |
|
| 2 |
Motif group IL_73452.2
Basepair signature:
|
4.65 | -6825.73 | 12 | 10 |
|
| 3 |
Motif group IL_66635.5
Basepair signature:
|
4.65 | -6845.29 | 12 | 11 |
Major groove intercalation |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
4.65 | -7083.29 | 12 | 11 |
Intercalated cWS |
| 5 |
Motif group IL_84476.1
Basepair signature:
|
4.65 | -7262.42 | 11 | 10 |
Multiple bulged bases |
| 6 |
Motif group IL_21200.1
Basepair signature:
|
2.33 | -2302.40 | 10 | 8 |
tSH-tHW |
| 7 |
Motif group IL_90346.1
Basepair signature:
|
2.33 | -2343.84 | 11 | 8 |
|
| 8 |
Motif group IL_82683.2
Basepair signature:
|
2.33 | -2847.08 | 10 | 8 |
|
| 9 |
Motif group IL_57188.5
Basepair signature:
|
2.33 | -2890.16 | 10 | 8 |
Kink-turn related |
| 10 |
Motif group IL_77045.1
Basepair signature:
|
2.33 | -3226.41 | 13 | 10 |
Kink-turn |
Loop 5 Internal loop
Column numbers: 174-176, 312-314
Scored sequences and counts
ACA*AUU 3
ACA*AAA 2
ACA*AAU 2
ACU*AAU 2
-AG*CUU 2
AAC*UUU 1
AAG*UCA 1
AAU*AAA 1
ACA*AAC 1
ACA*CUA 1
ACA*GUA 1
ACA*UAA 1
ACA*UUU 1
ACG*AGG 1
ACG*CUU 1
AGA*GUC 1
AGA*UAA 1
AGG*ACA 1
AGU*AAG 1
AUA*UCU 1
AUC*ACU 1
CAA*UUA 1
CAC*ACU 1
CUG*ACA 1
GCA*GAA 1
GCA*GUA 1
GCA*GUC 1
GCA*UUC 1
GCA*UUG 1
GCC*CAG 1
GUA*AAG 1
GUG*UUA 1
GUU*AUG 1
UAA*UUU 1
UAC*AAA 1
UAC*AAC 1
UAC*AGU 1
UAU*UUU 1
UUC*ACU 1
ACA*GA- 1
ACA*UG- 1
AGA*UG- 1
AUG*UG- 1
CAU*UA- 1
CAU*UG- 1
CUU*UG- 1
GCG*UG- 1
GUC*UA- 1
Omitted sequenced and counts
---*CUU 8
---*AAG 5
---*AAA 4
---*AAU 4
---*AUA 3
---*UAU 3
---*ACU 2
---*AGA 2
---*GUA 2
---*UUU 2
--A*UAG 1
--C*CAA 1
--C*UAG 1
---*ACA 1
---*AUU 1
---*CAA 1
---*CCG 1
---*CUA 1
---*GAA 1
---*GCA 1
---*GUU 1
---*UCA 1
---*UUG 1
---*CG- 1
---*UA- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_08770.1
Basepair signature:
|
72.22 | 17.98 | 3 | 1 |
|
| 2 |
Motif group IL_87907.2
Basepair signature:
|
72.22 | -9.77 | 2 | 0 |
Isolated non-canonical cWW pair |
| 3 |
Motif group IL_31737.3
Basepair signature:
|
61.11 | 8.43 | 3 | 1 |
Stack and bulge |
| 4 |
Motif group IL_14688.1
Basepair signature:
|
57.41 | 4.64 | 3 | 1 |
Isolated non-canonical cWW pair |
| 5 |
Motif group IL_42997.3
Basepair signature:
|
57.41 | -9.43 | 2 | 1 |
Isolated cWS basepair |
| 6 |
Motif group IL_07785.1
Basepair signature:
|
51.85 | -6.56 | 3 | 1 |
Isolated non-canonical cWW pair |
| 7 |
Motif group IL_42771.1
Basepair signature:
|
42.59 | -9.61 | 3 | 1 |
Multiple bulged bases |
| 8 |
Motif group IL_10167.6
Basepair signature:
|
42.59 | -41.50 | 3 | 1 |
Isolated cWH basepair |
| 9 |
Motif group IL_57744.1
Basepair signature:
|
40.74 | -17.12 | 3 | 1 |
Isolated non-canonical cWW pair |
| 10 |
Motif group IL_28037.2
Basepair signature:
|
40.74 | -41.39 | 2.5 | 1 |
Isolated non-canonical cWW pair |
Loop 6 Internal loop
Column numbers: 182-209, 302-306
Scored sequences and counts
AAAAUUAAUUUUAAGUCAUAAAAUUCAA*UGGUG 1
AAAAUUUAUUUUAAGCUAUAAAAUUCAA*UGGUG 1
AAAAUUUAUUUUAAGUCAUAAAAUUCAA*UGGUG 1
AACUCUUAAGUGAGUCAGUAAAAUUCAA*UGGUG 1
AAGAUUUAUUUUAAGUCAUAAAAUUCAG*CGGUG 1
AAGAUUUAUUUUAAGUCAUGAAAUUCAA*UGGUG 1
AAGGUAGCUAAGCUAUCAUAAAAUACAG*CAGUG 1
AAGGUUUAUUUUAAGCCAUAAAAUUCAU*AGGUG 1
AAGGUUUAUUUUAAGUCAUAAAAUUCAA*UGGUG 1
AAGUUUAUUUUAAGUCAGUAAAAUUCAA*UGGUG 1
AAUACAGCUUUGCUGUAAUAAAAUACAA*UGGUG 1
AAUGCAACGUUAUUGCUAUAAAAUACAA*UGGUG 1
ACGGCAAUAUAAUUGUCAUAAAAUACAA*UGGUG 1
ACGGGAGCAUCGCUCUCAUAAAAUACAG*CAGUG 1
ACUAAUAUCUGUUUGUCAUAAAAUUCAA*UGGUG 1
ACUUUCUUAUGAAAGUUAUAAAAUUCAA*UGGUG 1
AGAACCAUUUUGUGGGCAUAAAAUACAU*AGGUG 1
AGACAACCAAAGUUGUCAUAAAAUACAG*CAGUG 1
AGCGCUCUUAUAGAGCCAUAAAAUACAG*CAGUG 1
AGGGCAACAAUGUUGUCAUAAAAUACAA*UGGUG 1
AGGGCAACUUAGUUGUCAUAAAAUACAA*UGGUG 1
AUAAUAUAAUUAAUGUCAUAAAAUACAG*CAGUG 1
AUGACAGUAUAACUGUUAUAAAAUACAA*UGGUG 1
AUGCAACAAAAGUUGUUAUAAAAUACAA*UGGUG 1
AUGCUGCAUUUUAUGACAUAAAAUACAG*CAGUG 1
AUGGCAACCUAGUUGCUAUUAAAUACAA*CGGUG 1
AUGGCCAUUUAAUGGUUAUAAAAUACAG*CAUUG 1
AUGGGAGCCCAGCUCUUAUAAAAUACAG*UGGUG 1
AUUAAGUCCAAAUGCUGAUAAAAUUCAA*UGGUG 1
AUUGAAUCUAUAUGCCGAUGAAAUACAA*UGGUG 1
AUUUAAACCAUUGAGUCAUAAAAUACAG*CAGUG 1
AUUUAAGUCUAUAUGCCAUGAAAUACAA*UGGUG 1
AUUUAAUGACUCUUGGCAUGAAAUACAG*CAGUG 1
CAAAGAUUUCUGAAGCCAUCAAAUACAA*UGGUG 1
CAGAUUUUUUUCUGGACAUGAAAUACAG*CAGUG 1
CAGCAAGCAGCAUUGCUAUGAAAUACAG*CAGUG 1
CAUUAUGUUUUUGGGCUAUAAAGUGCAG*CAGUG 1
CAUUAUUUAGCGUUCGGGUGCAAUACAG*CAGUG 1
CCUAAAGAAGUAUUGGUAUGAAAUACAG*CAGUG 1
CGGCAAUCUUAGUUGUCAUUAAAUGCAA*UGGUG 1
CGUUACAUUUUGAGGUUAUAAAGUUCAA*UGGUG 1
CUAAAUGAGCAAUAGUUAUAAAAUACAG*CAGUG 1
CUAAUCAGAAUGAAAUCAUAAAAUACAG*CAGUG 1
CUCUAAGUUUUAUUGUUAUAAAAUUCAA*UGGUG 1
CUCUCUAGAAGAAUGUCAUAAAAUACAA*UGGUG 1
CUCUUUGGGCACCAGACAUGAAAUUCAA*UGGUG 1
CUUAUUUGAUUUGCUGUAUGAAAUUCAA*UGGUG 1
CUUUCAAGCAACCUGUCUUAAAAUACAA*UGGUG 1
GAAAUACUGACAAUGUUAUAAAAUACAG*CAGUG 1
GAGAUUUAUUUUAAGCCAUAAAAUUCAA*UGGUG 1
GAUUUCUAAAAAUGCCAGUAAAAUACAG*CAGUG 1
GAUUUUCAUUUUAAGUCAUAAAAUACAA*UGGUG 1
GCAACCAAAAAGUUGUUAUAAAGUUCAA*UGGUG 1
GCACUCUUAAUUGAGUCAUGAAAUUCAA*UGAUG 1
GCUUUCUAAAGAAAGCCAUAAAAUUCAA*UGGUG 1
GGAUUUUGGAGAAAGGUAUCAAAUGCAA*UGGUG 1
GUAGCAAAAGUGCUACAAUAAAAUACAA*UGGUG 1
GUCUUGCUUGCGCAAGCAUGAAAUUCAG*UGGUG 1
GUGCUCUUUUUAAAGCCAUAAAAUACAA*CAGUG 1
GUGCUUUAAACUAAGCCAUAAAAUUCAA*UGGUG 1
GUUAAUUUUAACAAACUAUGAAAUGCAA*UGGUG 1
GUUGUUAGAAUGCAAUCAUAAAAUACAA*UGGUG 1
UAAAUUUAUUUUAAGUCGUGAAAUACAG*CCGUG 1
UAAGGCAGUAAUCUGUCAUAAAAUACAA*UGGUG 1
UAAGGCAGUAAUCUGUCAUAAAAUACAG*UGGUG 1
UAAGUUUAAUUUAAGUCAUAAAAUACAG*CGGUG 1
UAAUUUGAUUUUAAGUCAUGAAAUACAG*CAGUG 1
UAGACAACUAUGUUGUCAUAAAAUACAG*UGGUG 1
UAGAUUUAUUUUAAGCCAUAAAAUACAA*CAGUG 1
UAGAUUUAUUUUAAGUCAUAAAAUACAG*CAGUG 1
UAGAUUUAUUUUAAGUCAUAAAAUUCAA*UGGUG 1
UAGAUUUAUUUUAAGUCAUAAAAUUCAG*CGGUG 1
UAGAUUUAUUUUAAGUCAUAAAAUUCAU*AGGUG 1
UAGAUUUAUUUUAAGUUAUAAAAUACAA*UGGUG 1
UAGAUUUAUUUUAAGUUAUAAAAUACAG*CAGUG 1
UAGGGCAAGAAAUUGCUAUAAACAACAA*CGGUG 1
UAGGUUUAUUUUAAGUCAUGAAAUUCAA*UGGUG 1
UAUAUCUCAAAGGAGAUAUAAAAUACAA*UGGUG 1
UAUGGCAACUUGUUGCUAUAAAAUUCAA*UGGUG 1
UAUGGCAGCUUGCUGCUAUAAAAUGCAC*UGGUG 1
UAUGGGAGCUUGCUCUUAUAAAAUACAA*UGGUG 1
UAUGGGAGUUUACUCUUAUAAAAUGCAA*UGGUG 1
UAUUUAUUUAUGAAGUUAUAAAAUACAG*CAGUG 1
UCCUAUGAUUUGUUGUGAUAAAAUACAA*UGGUG 1
UCUUCUGAUUAUCGGCUGUGAAAUUCAG*CGGUG 1
UGAAUUUAUUUUAAGUUAUGAAAUACAA*UGGUG 1
UGAGAACUUUUGUUCCUAUAAAAUACAA*UGGUG 1
UGCCUUUUAAUAGGCUAGUAAAAUACAA*UGGUG 1
UGCUUUCAUAAGAAGCCAUAAAAUUCAA*UGGUG 1
UGCUUUGUUUUUUAGCCAUGAAAUUCAA*UGGUG 1
UGCUUUUUAAAAAAGCCAUAAAAUUCAA*UGGUG 1
UGGCUUUUCUGCCAACUGUGAAAUACAG*CAGUG 1
UUAAAUUUUUAGAAGUCAUAAAAUUCAA*UGGUG 1
UUAGUUUAUUUUAAGUCAUAAAAUACAG*CAGUG 1
UUGUUUUAAAACAAAUCAUAAAAUUCAA*UGGUG 1
UUUAUUUGAUUUAAGCCAUAAAAUACAG*UGGUG 1
UUUCCUUUUGAGAAGUUAUGAAAUGCAG*CAGUG 1
-UAUAUCUCUUUGAGAUAUUAAAUUCAA*UGGUG 1
UAGGUUUAUUUUAAGUCAUAAAA-ACAG*CGGUG 1
UUUAAGAUGAUUUAAAC-UAGAAUGCAA*UGGUG 1
--AAGCUUCCAAUAGCGAUAAAAUUCAA*UGGUG 1
---UAAGGAUAAAAUCCAUAAAAUACAA*UGGUG 1
---UAUGCUCCUAGGGCGUCAAAUGCAA*UGGUG 1
-----------------UUCCAAUUCAA*UGGUG 1
No Matches Found
View All Results for this LoopLoop 7 Internal loop
Column numbers: 213-216, 295-298
Scored sequences and counts
CAAC*GAAG 28
CGAC*GAAG 18
UGAC*GAAA 13
CAAU*AAAG 4
CGAU*AAAG 4
UAAC*GAAA 4
CAAU*AGAG 3
UGAU*AAAA 3
UUUC*GAAA 3
AAAC*GAAU 2
UGAC*GAAG 2
UGAU*AAAG 2
UUCC*GGAA 2
UUUC*GGAA 2
AAAU*AAAU 1
AGAC*GAAU 1
AGAU*AAAU 1
AUUC*GAAU 1
CAAU*AACG 1
CCUC*GAUG 1
CGAU*GGAG 1
CGCU*ACCG 1
UAAU*AAAA 1
UAAU*AAAG 1
UGAC*GAAC 1
UGAC*GAAU 1
UGAC*GGAA 1
UGAC*GGAU 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_09705.15
Basepair signature:
|
92.31 | 71.93 | 1 | 0 |
Double sheared |
| 2 |
Motif group IL_41344.1
Basepair signature:
|
92.31 | 25.92 | 5 | 2 |
|
| 3 |
Motif group IL_48444.6
Basepair signature:
|
90.38 | 35.98 | 3 | 2 |
|
| 4 |
Motif group IL_99358.1
Basepair signature:
|
90.38 | 21.89 | 3 | 2 |
|
| 5 |
Motif group IL_80398.1
Basepair signature:
|
89.42 | 63.77 | 2 | 1 |
Minor groove platform |
| 6 |
Motif group IL_84251.1
Basepair signature:
|
85.58 | 37.63 | 3 | 1 |
|
| 7 |
Motif group IL_10484.1
Basepair signature:
|
85.58 | 16.68 | 4 | 2 |
Double sheared |
| 8 |
Motif group IL_77691.5
Basepair signature:
|
82.69 | -4.23 | 2 | 1 |
UAA/GAN related |
| 9 |
Motif group IL_25872.4
Basepair signature:
|
81.73 | 12.80 | 5 | 1 |
|
| 10 |
Motif group IL_71598.1
Basepair signature:
|
73.08 | 4.54 | 3 | 2 |
|
Loop 8 Internal loop
Column numbers: 217-218, 292-294
Scored sequences and counts
AA*U-U 19
AG*C-U 13
AU*A-U 13
AC*G-U 12
AG*U-U 6
AA*UAU 2
AC*GAU 2
AA*UCU 1
AG*UAU 1
GG*CAC 1
AU*C-U 1
AU*G-U 1
CC*G-U 1
CG*C-U 1
CU*U-C 1
GG*U-C 1
UU*-CU 1
Omitted sequenced and counts
A-*--U 14
U-*--A 9
U-*--U 2
AA*--U 1
UA*--U 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
96.10 | 24.34 | 2 | 1 |
Major groove platform |
| 2 |
Motif group IL_42771.1
Basepair signature:
|
93.51 | 24.94 | 3 | 1 |
Multiple bulged bases |
| 3 |
Motif group IL_00225.13
Basepair signature:
|
93.51 | 4.34 | 1 | 1 |
Single bulged G |
| 4 |
Motif group IL_84476.1
Basepair signature:
|
92.21 | 23.21 | 3 | 2 |
Multiple bulged bases |
| 5 |
Motif group IL_81831.1
Basepair signature:
|
92.21 | 21.08 | 4 | 1 |
Intercalated cWS |
| 6 |
Motif group IL_66635.5
Basepair signature:
|
92.21 | 17.27 | 3 | 1 |
Major groove intercalation |
| 7 |
Motif group IL_33761.2
Basepair signature:
|
92.21 | 11.26 | 4 | 1 |
|
| 8 |
Motif group IL_26793.1
Basepair signature:
|
84.42 | 18.49 | 2 | 1 |
Single stack bend |
| 9 |
Motif group IL_90729.1
Basepair signature:
|
84.42 | 13.09 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_73452.2
Basepair signature:
|
83.12 | 20.53 | 4 | 1 |
|
Loop 9 Internal loop
Column numbers: 220-225, 285-290
Scored sequences and counts
UAGUAA*UGAA-A 10
UAGUAG*UGAA-A 6
UAGUAG*CGAA-A 5
AAGUAA*UGAA-A 4
AAGUAG*CGAA-A 3
UAGUAG*CGAA-U 3
CAGUAG*CGAAAA 2
AAGUAC*GGAA-A 2
UAGUAA*UGAA-C 2
UAGUAA*UGAA-U 2
UAGUAG*UGAA-C 2
UGGUAA*UGAA-C 2
UGGUAG*CGAA-G 2
UGGUAG*CGAA-U 2
AAGUAG*CGAACG 1
CAGUAG*UGAACG 1
GAGUAG*UGAAAU 1
UAGUAU*UGAAUC 1
UGGUAA*UGAACG 1
AAAUAG*CGAA-G 1
AAGUAA*CCAA-A 1
AAGUAA*CGAA-A 1
AAGUAU*AGAA-A 1
CAGUAG*CGAA-U 1
GAGUAA*UGAA-A 1
UAAUAA*UGAA-U 1
UAGUAC*GGAA-A 1
UAGUAG*CAAA-U 1
UAGUAG*CCAA-C 1
UAGUAG*UGAA-U 1
UGGUAA*UGAA-U 1
UGGUAG*UGAA-C 1
A----U*AC---- 1
Omitted sequenced and counts
------*------ 35
-----A*UAAA-G 1
---UA-*-----U 1
A----U*A----- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_88269.4
Basepair signature:
|
98.48 | 61.60 | 3 | 1 |
6x5 Sarcin-Ricin; G-bulge |
| 2 |
Motif group IL_21667.1
Basepair signature:
|
80.30 | 19.26 | 3 | 2 |
|
| 3 |
Motif group IL_26307.2
Basepair signature:
|
80.30 | 5.06 | 3 | 2 |
7x6 Sarcin-Ricin; G-bulge |
| 4 |
Motif group IL_21001.1
Basepair signature:
|
77.27 | -0.20 | 4 | 2 |
|
| 5 |
Motif group IL_62654.1
Basepair signature:
|
75.76 | 1.02 | 5 | 2 |
tSH-tHH-tHS |
| 6 |
Motif group IL_97631.1
Basepair signature:
|
65.15 | -1.80 | 7 | 3 |
Triple sheared related |
| 7 |
Motif group IL_33886.1
Basepair signature:
|
65.15 | -5.76 | 6 | 3 |
Kink-turn with embedded cWW pair |
| 8 |
Motif group IL_42778.1
Basepair signature:
|
62.12 | -0.43 | 6 | 3 |
|
| 9 |
Motif group IL_24254.1
Basepair signature:
|
36.36 | -10.40 | 5 | 2 |
7x6 Sarcin-Ricin with UU cWW pair; G-bulge |
| 10 |
Motif group IL_38862.4
Basepair signature:
|
27.27 | -24.53 | 4 | 1 |
5x5 Sarcin-Ricin with intercalated A; G-bulge |
Loop 10 Hairpin loop
Column numbers: 226-284
Scored sequences and counts
--------------UGCG----------------------------------------- 6
--------------GAAA----------------------------------------- 5
--------------CUAAUGU-------------------------------------- 4
--------------UACG----------------------------------------- 4
U-------------GAAA----------------------------------------A 3
--------------GCAA----------------------------------------- 3
--------------CUAAUGC-------------------------------------- 2
C-------------AUCU----------------------------------------G 2
--------------UUCG----------------------------------------- 2
AGGGUUUCUUUUUUAGAAAAAAAGAAACUACUGUGGUAGA-----AAAAACUACAAUUG 1
GGUUAAUUUUU---CCUUACGAGAAAAAAUUAAUUGCAAUAAAA----AAUAUUUACAA 1
UUUACAUUUGG---AAAUAUCCUAGAAAUCUUUGAUUUCUUCGUA---CCUAAUGU--- 1
UUUAAAGGAAG---GUUGAACUUCAAGGAAACGUAG------------UUGCCUUACGA 1
CA------------AAACAUUGGAAGUCUGAAAAGAUGAAAAAU-------------GG 1
GCA-CAAAUGUGA-UGGUCU--------------------------UUACAUUUCUUGC 1
U-------------AAUGAUAGAACCUUGGGGAAGUUUUUGA----------------A 1
UU------------AUGAUAAAACUCUGGGAAAGCUUUUG-----------------AA 1
C-------------GAUGAUAAGUGUGUGGGAAGCGCUUGA-----------------G 1
C-------------UAUAAAAGAUGUGUGGGAAGCUCUUUU-----------------G 1
C-------------UAUAAAAGGUGUGUGGGAAGCCCUUUC-----------------G 1
CGCUAAAAGGUGU-GUGGGAA-------------------------GC-CCUUU---UG 1
CUAUAAAAGG----CGUGUGGGAAGC-----------------------CCUUUC---G 1
CUAUAAAAGGUGU-GUGGGAA-------------------------AC-CCUUU---CG 1
U-------------AAUGAAACAACCUUGGGGAAGUUUGGA-----------------G 1
U-------------AAUGACAAACCUUGGGUAAGUUCUUCC-----------------A 1
C-------------GAUGAACGACCUUGGGGAAGUUGGGA------------------G 1
C------AAGG---AAAGAUCCUAGGGAAA------------------UCUUGA----G 1
U-------------AAUGAAGAACCUUGGGUAAGUUUGGA------------------G 1
U-------------AAUGACAAGCCUUGGGGAAGUUUUGA------------------A 1
U-------------GAUGACAAGCCUUGGGGAAGUUUUGA------------------G 1
UU------------AUGAAAAACCUUGGGGAAGUUUGG-------------------AG 1
U-------------AAUGAGGGAACCGAAAGUGAGCUGA-------------------A 1
U-------------GAUGAAGGAACCAAAAGUGAGCUGA-------------------G 1
U-------------GAUGAAGGAACUGAAAGUGAGCUGA-------------------G 1
UUAUGAUAGCC---UUCG------------------------------GGAAGCCAGAG 1
CG------------AUGAUUUGCUUAAAAGGGGUG----------------------UG 1
CGAUGAUCUUA---GAAA------------------------------AAAGG-GAUUG 1
C-------------AAUGACUCGCUCGAAUGAGGA-----------------------G 1
AA------------AUUAGCUAUUAAGCAA----------------------A----UU 1
--------------AUAGACUAAGGUUUACAUG-------------------------- 1
GCCAA---------UCUCCAU---------------------------------UUGGC 1
GGCGA---------UUUCCA---------------------------------UUCGCC 1
C-------------AAUUCUAGAAA--------------------------------UG 1
CUCUU---------GCAA------------------------------------AGGAG 1
U-------------UAUGAUAUGAAU--------------------------------G 1
U-------------UAUUAUAUGAAU--------------------------------G 1
UUUUC---------GAAA------------------------------------GAGAA 1
--------------UGAUGCUUAGCAC-------------------------------- 1
--------------UGAUGCUUCGCAC-------------------------------- 1
CUUU----------CUG-------------------------------------GAAAG 1
GAC-----------UUUAUU------------------------------------GUC 1
AUU-------------AAACC-----------------------------------AAU 1
C-------------UGAAAUAUU-----------------------------------G 1
U-------------UGAAAUAUU-----------------------------------A 1
U-------------UUAUUUUUU-----------------------------------G 1
AGC-----------GUUU--------------------------------------GCU 1
C-------------CUUAAAAA------------------------------------G 1
CCU-----------UUCU--------------------------------------UGG 1
CGU-----------GAUA--------------------------------------GCG 1
UU------------GAAA-------------------------------------AUUA 1
--------------UCUAAUGUG------------------------------------ 1
CA------------CAGUU--------------------------------------UG 1
AC------------------GUAA---------------------------------GU 1
G-------------CUAGUU--------------------------------------C 1
GU------------UUAA---------------------------------------AC 1
U-------------CUAGUU--------------------------------------A 1
UU------------UCGC---------------------------------------AA 1
--------------CCAAUGU-------------------------------------- 1
--------------CUAACGC-------------------------------------- 1
--------------CUAAUAU-------------------------------------- 1
--------------CUAUUGC-------------------------------------- 1
GC------------AAU----------------------------------------GC 1
GC------------CGU----------------------------------------GC 1
U-------------GAAAU---------------------------------------A 1
U-------------UUUU---------------------------------------GG 1
A-------------UUAU----------------------------------------U 1
C-------------UUUC----------------------------------------G 1
--------------AAAU----------------------------------------- 1
--------------AUAU----------------------------------------- 1
--------------GUAA----------------------------------------- 1
--------------UCCG----------------------------------------- 1
--------------UUAA----------------------------------------- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_13189.1
Basepair signature:
|
21.15 | -4124.77 | 5 | 5 |
|
| 2 |
Motif group HL_56131.2
Basepair signature:
|
20.19 | -3587.71 | 5 | 4 |
|
| 3 |
Motif group HL_48778.2
Basepair signature:
|
20.19 | -4540.63 | 4 | 4 |
Mini UNCG |
| 4 |
Motif group HL_53890.2
Basepair signature:
|
19.23 | -3623.83 | 4 | 3 |
|
| 5 |
Motif group HL_56334.1
Basepair signature:
|
18.27 | -4932.60 | 4 | 4 |
Mini UNCG |
| 6 |
Motif group HL_32346.4
Basepair signature:
|
18.27 | -4938.58 | 4 | 4.5 |
|
| 7 |
Motif group HL_50006.2
Basepair signature:
|
16.35 | -3587.73 | 5 | 4 |
|
| 8 |
Motif group HL_78677.1
Basepair signature:
|
15.38 | -5451.05 | 6 | 5.5 |
|
| 9 |
Motif group HL_37824.7
Basepair signature:
|
14.42 | -3343.87 | 4 | 3 |
GNRA |
| 10 |
Motif group HL_70782.2
Basepair signature:
|
14.42 | -4516.13 | 5 | 5 |
|