RNA 3D Hub //

Motif IL_60247.1 Version IL_60247.1 of this group appears in releases 3.2 to 3.2

#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3 4break 5 6 7 81-82-73-53-64-5
1 IL_422D_001422D0.60070Tandem non-canonical cWW pairsB+AU19U20C21G22*U7U8C9G10cWWcWWcWWcWW
2 IL_4V88_4664V880.53371Non canonical cWW and near pairA6A1753A1754A1756||AG1757*C1644G1645C1646U1647cWWntWWncWWcWW
3 IL_5J7L_0335J7L0.39171Tandem non-canonical cWW pairsAAU662A663G664G666*U740G741G742A743cWWcWWcwWcWW
4 IL_4LFB_0294LFB0.42281Tandem non-canonical cWW pairsAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
5 IL_1G1X_0031G1X0.40121Tandem non-canonical cWW pairsD+EG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
6 IL_1G1X_0061G1X0.42451Tandem non-canonical cWW pairsI+JG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
7 IL_4TS2_0054TS20.44193Tandem non-canonical cWW pairsX+YG22A23A24C28*G74A75G76C77cWWcWWncwWcWW
8 IL_4KZD_0044KZD0.43663Tandem non-canonical cWW pairsRG19A20A21C25*G63A64G65C66cWWcWWcWW
9 IL_4V88_4384V880.30480Tandem non-canonical cWW pairsA6G1074C1075A1076C1077*G1041G1042A1043U1044cWWncBWcWWcWW
10 IL_4V5O_1294V5O0.32040Tandem non-canonical cWW pairsBAG1046C1047A1048C1049*G1019G1020A1021U1022ncWWncBWcWWcWW
11 IL_1D4R_0011D4R0.36910Tandem non-canonical cWW pairsA+BG4A5C6C7*G22A23C24C25cWWcWWcWWacWW
12 IL_1JID_0021JID0.33720Tandem non-canonical cWW pairsBG138A139C140C141*G156A157C158C159cWWcWWcWWcWW
13 IL_1D4R_0031D4R0.35510Tandem non-canonical cWW pairsA+BG22A23C24C25*G4A5C6C7cWWcWWcWWcWW
14 IL_1MFQ_0041MFQ0.28800Tandem non-canonical cWW pairsAG138A139C140C141*G156A157C158C159cWWncWWncWWcWW
15 IL_3WBM_0023WBM0.29940Tandem non-canonical cWW pairsX+YA10C11C12C13*G14A15C16U17cWWncWBncWWcWW
16 IL_3WBM_0033WBM0.28890Tandem non-canonical cWW pairsY+XA10C11C12C13*G14A15C16U17cWWncWBcWWcWW
17 IL_4V5O_1654V5O0.31650Tandem non-canonical cWW pairsBAA1676A1677U1678A1679*U1646U1647C1648U1649cWWcWWancwWcWW
18 IL_4V5O_0854V5O0.41510Tandem non-canonical cWW pairsBAA23C24A25U26*A593U594A595U596cWWcWWncWwcWWcWW
19 IL_4P95_0024P950.33750Tandem non-canonical cWW pairsAG223G224G225U226*A15G16A17C18cWWcWWcWW
20 IL_4P8Z_0024P8Z0.37730Tandem non-canonical cWW pairsAG5G6G7U8*A181G182A183C184cWWcWWcWW
21 IL_4V88_4324V880.40170Tandem non-canonical cWW pairsA6G885U886A887U888*A924G925A926C927cWWcWWcWW
22 IL_4V88_4304V880.35910Tandem non-canonical cWW pairsA6G871G872U873C874*G953G954A955C956cWWcWWcWW
23 IL_4V5O_1224V5O0.37020Tandem non-canonical cWW pairsBAA849G850U851U852*A931G932A933U934cWWcWWncWWcWW
24 IL_3CUL_0023CUL0.35730Tandem non-canonical cWW pairsCG56U57G58G59*C87A88G89C90cWWncWWancWWcWW
25 IL_4K27_0014K270.30910Tandem non-canonical cWW pairsUC49C50U51G52*C4C5U6G7cWWcWWcWWcWW
26 IL_361D_001361D0.35630Tandem non-canonical cWW pairsBU80G81G82G83*C93C94U95G96cWWncWWacWW
27 IL_4EYA_0084EYA0.25130Tandem non-canonical cWW pairsl+kC6U7U8G9*C6U7U8G9cWWncwWncwWcWW
28 IL_4V8P_2614V8P0.16830Tandem non-canonical cWW pairsD1U2724A2725C2726A2727*U2707U2708G2709A2710cWWcWWcWWcWW
29 IL_5J7L_2835J7L0.00000Tandem non-canonical cWW pairsDAG1038A1039A1040G1041*C1114G1115G1116C1117cWWcWWcWWcWW
30 IL_4V5O_1234V5O0.29921Tandem non-canonical cWW pairsBAC928A929A930A931*U852G853G855G856cWWncWWcWWcWW
31 IL_4V88_4314V880.30421Tandem non-canonical cWW pairsA6C950A951A952G953*C874G875G877G878cWWcWWcWWcWW
32 IL_4WF9_0854WF90.47321Tandem non-canonical cWW pairsXC2229C2231A2232C2233*G2245U2246G2247G2248ncWWncWWncWWcWW
33 IL_4GMA_0084GMA0.44780Tandem non-canonical cWW pairsZU205G206A207A208*U186U187C188G189ncWWcWW
34 IL_5EW4_0025EW40.38530Tandem non-canonical cWW pairsB+AC8C9C10G11*C14C15C16G17cWWncBWncBWcWW
35 IL_4EYA_0034EYA0.47480Tandem non-canonical cWW pairsf+eC6U7U8G9*C6U7U8G9cWWcwWcWwcWW
36 IL_4V5O_1624V5O0.38930Tandem non-canonical cWW pairsBAU1635C1636U1637G1638*C1687C1688U1689A1690cWWcWWcWWcWW
37 IL_4K27_0034K270.40510Tandem non-canonical cWW pairsUC12C13U14G15*C41C42U43G44cWWcWWcWWcWW
38 IL_4K27_0024K270.41600Tandem non-canonical cWW pairsUC8C9U10G11*C45C46U47G48cWWcWWcWWcWW
39 IL_4V8P_2854V8P0.32760Tandem non-canonical cWW pairsD1C3271U3272U3273A3274*U3260U3261U3262G3263cWWcWwcWwcWW
40 IL_2PN3_0042PN30.46410Tandem non-canonical cWW pairsA+BC62U63U64C65*G102U103C104G105cWWcWWcWwcWW
41 IL_3TZR_0033TZR0.43120Tandem non-canonical cWW pairsB+AG102U103C104G105*C62U63U64C65cWWcwWcWWcWW
42 IL_4IOA_0414IOA0.42830Tandem non-canonical cWW pairsXG1196U1197C1198U1199*A1175U1176U1177C1178cWWcwWcWWcWW
43 IL_4UYK_0034UYK0.45860Tandem non-canonical cWW pairsRG117U118U119C120*G81U82U83C84cWWcwWcWwcWW
44 IL_280D_001280D0.45770Tandem non-canonical cWW pairsA+BC5U6U7G8*C17U18U19G20cWWcwWcWwcWW
45 IL_5EW4_0015EW40.47540Tandem non-canonical cWW pairsA+BC8C9C10G11*C14C15C16G17cWWcWBcwWcWW
46 IL_4V88_4734V880.47860Tandem non-canonical cWW pairsA6U1723U1724U1725G1726*C1675U1676C1677A1678cWWcWwcWW
47 IL_5C5W_0035C5W0.37760Tandem non-canonical cWW pairsAC2||||5_556C3||||5_556U4||||5_556G5||||5_556*C15U16A17G18cWWcWWcWwcWW
48 IL_5C5W_0015C5W0.37760Tandem non-canonical cWW pairsAC2C3U4G5*C15||||5_556U16||||5_556A17||||5_556G18||||5_556cWWcWWcWwcWW
49 IL_3R2D_0023R2D0.37820Tandem non-canonical cWW pairsR+SC6U7U8G9*C6U7U8G9cWWcwWcWwcWW
50 IL_402D_001402D0.41050Tandem non-canonical cWW pairsB+AC111C112A113G114*C103C104A105G106cWWcWWcWWcWW
51 IL_4V5O_0904V5O0.39480Tandem non-canonical cWW pairsBAG105U106U107A108*U293U294U295C296cWWcwWcWwcWW
52 IL_4V88_3914V880.38030Tandem non-canonical cWW pairsA6G109U110U111A112*U302U303U304C305cWWcwWcWwcWW
53 IL_4V88_4294V880.36671Tandem non-canonical cWW pairsA6G957U958U960U961*G867G868A869C870cWWncWWcWW
54 IL_4V88_4614V880.50720Tandem non-canonical cWW pairsA6C1509U1510U1511G1512*C1495U1496U1497G1498cWWcWwcWW
55 IL_4V8P_2054V8P0.54460Tandem non-canonical cWW pairsD1U1067U1068C1069U1070*A1032U1033U1034A1035cWWcwWncWScWW
56 IL_4WF9_1104WF90.47540Tandem non-canonical cWW pairsYG5U6G7A8*U107G108C109C110cWWncWWcWW
57 IL_4WF9_1094WF90.42760Tandem non-canonical cWW pairsYC2U3G4G5*C110A111G112G113cWWncWWancWHcWW
58 IL_5J7L_2965J7L0.54341Tandem non-canonical cWW pairsDAG1432A1433A1434G1435*C1557C1558G1560C1561cWWcWWtWWcWW
59 IL_2IL9_0012IL90.53780Tandem non-canonical cWW pairsAG6079U6080C6081U6082*G6110G6111A6112C6113cWWcWW
60 IL_3BNR_0083BNR0.75581Minor groove platform relatedC+DC7A8C9C10*G13C14A16G17cWWcwWncwWcWW
61 IL_3BNT_0053BNT0.76721Tandem non-canonical cWW pairsAC6||||4_665A7||||4_665C8||||4_665C9||||4_665*G14C15A17G18cWWcwWncBWcWW
62 IL_3BNT_0023BNT0.76721Tandem non-canonical cWW pairsAC6A7C8C9*G14||||4_665C15||||4_665A17||||4_665G18||||4_665cWWcwWncBWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUG*CUUG5
GACC*GACC4
GAGAG*UGGU3
CCUG*CCUG3
CACC*GCAAG3
GAAGGAC*GAGC2
GCAC*GGAU2
ACCC*GACU2
GGGU*AGAC2
CCCG*CCCG2
CCUG*CUAG2
GUUA*UUUC2
UUCG*UUCG1
AAAAG*CGCU1
UAGAG*UGGA1
AAUA*UUCU1
ACAU*AUAU1
GUAU*AGAC1
GGUC*GGAC1
AGUU*AGAU1
GUGG*CAGC1
UGGG*CCUG1
UACA*UUGA1
GAAG*CGGC1
CAAA*UGGGG1
CAAG*CGGGG1
CGCAC*GUGG1
UGAA*UUCG1
UCUG*CCUA1
CUUA*UUUG1
CUUC*GUCG1
GUCG*CUUC1
GUCU*AUUC1
GUUC*GUUC1
UUUG*CUCA1
CCAG*CCAG1
GUUUU*GGAC1
UUCU*AUUA1
GUGA*UGCC1
CUGG*CAGG1
GAAG*CCUGC1
GUCU*GGAC1
Non-Watson-Crick part of the motif
SequenceCounts
UU*UU9
AGA*GG4
AC*AC4
CU*CU4
UC*UU3
AC*CAA3
AAGGA*AG2
CA*GA2
CC*AC2
GG*GA2
GU*GA2
UG*AG2
AA*GGG2
CC*CC2
UU*UC2
CU*UA2
UC*UC1
AAA*GC1
AU*UC1
CA*UA1
UA*GA1
GG*CU1
AC*UG1
AA*GG1
GCA*UG1
GA*UC1
CA*CA1
UUU*GA1
UG*GC1
AA*CUG1
UC*GA1

Release history

Release3.2
Date2018-09-26
StatusNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (60)
  • Minor groove platform related (1)
  • Non canonical cWW and near pair (1)
    • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.51 | Max 1.04
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