Motif IL_89407.4 Version IL_89407.4 of this group appears in releases 3.17 to 3.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-6	2-3	2-4	2-5	2-6	3-4
1	IL_4V9F_062	4V9F	0.7498	4	Intercalated tWH	0	LSU rRNA	C	2031	U	2032	U	2034	*	A	1747	U	1748	G	1752	cWW					cWW
2	IL_4WF9_065	4WF9	0.7654	4	Intercalated tWH	X	LSU rRNA	C	2017	U	2018	U	2020	*	A	1713	C	1714	G	1718	cWW					cWW
3	IL_5J7L_307	5J7L	0.7544	4	Intercalated tWH	DA	LSU rRNA	C	1990	U	1991	U	1993	*	A	1669	C	1670	G	1674	cWW					cWW
4	IL_2ET8_003	2ET8	0.6801	1	Decoding loop related	B+A	RNA (22-mer)	C	29	A	30	C	31	*	G	15	A	17	G	18	cWW					cWW
5	IL_4WZM_001	4WZM	0.5795	0	Isolated cWH basepair	C+B	RNA primer	G	917	C	918	C	919	*	G	906	G	907	C	908	cWW			ncWH		cWW
6	IL_4J50_004	4J50	0.5828	0	Isolated cWH basepair	A+B	RNA (19-mer)	C	7\|\|\|\|2_555	A	8\|\|\|\|2_555	G	9\|\|\|\|2_555	*	C	13\|\|\|\|2_555	A	14\|\|\|\|2_555	G	15\|\|\|\|2_555	cWW					cWW
7	IL_4J50_001	4J50	0.5828	0	Isolated cWH basepair	A+B	RNA (19-mer)	C	7	A	8	G	9	*	C	13	A	14	G	15	cWW					cWW
8	IL_4J50_007	4J50	0.5828	0	Isolated cWH basepair	A+B	RNA (19-mer)	C	7\|\|\|\|3_555	A	8\|\|\|\|3_555	G	9\|\|\|\|3_555	*	C	13\|\|\|\|3_555	A	14\|\|\|\|3_555	G	15\|\|\|\|3_555	cWW					cWW
9	IL_4J50_006	4J50	0.5826	0	Isolated cWH basepair	B+A	RNA (19-mer)	C	7\|\|\|\|2_555	A	8\|\|\|\|2_555	G	9\|\|\|\|2_555	*	C	13\|\|\|\|2_555	A	14\|\|\|\|2_555	G	15\|\|\|\|2_555	cWW					cWW
10	IL_4J50_009	4J50	0.5826	0	Isolated cWH basepair	B+A	RNA (19-mer)	C	7\|\|\|\|3_555	A	8\|\|\|\|3_555	G	9\|\|\|\|3_555	*	C	13\|\|\|\|3_555	A	14\|\|\|\|3_555	G	15\|\|\|\|3_555	cWW					cWW
11	IL_4J50_003	4J50	0.5826	0	Isolated cWH basepair	B+A	RNA (19-mer)	C	7	A	8	G	9	*	C	13	A	14	G	15	cWW					cWW
12	IL_4PKD_001	4PKD	0.5048	1	Isolated non-canonical cWW with bulges	V	U1 snRNA stem-loops 1 and 2 (55-MER)	A	86	U	87	C	89	*	G	106	U	107	U	108	cWW			cwW		cWW
13	IL_4WF9_095	4WF9	0.4865	2	Isolated non-canonical cWW with bulges	X	LSU rRNA	G	2601	C	2602	G	2605	*	C	2537	U	2538	C	2539	cWW			ncWW		cWW
14	IL_5J7L_340	5J7L	0.5217	2	Isolated non-canonical cWW with bulges	DA	LSU rRNA	G	2574	C	2575	G	2578	*	C	2510	U	2511	C	2512	cWW			ncWW		cWW
15	IL_4Y4O_272	4Y4O	0.5243	2	Isolated non-canonical cWW with bulges (H)	2A	LSU rRNA	G	2574	C	2575	G	2578	*	C	2510	U	2511	C	2512	cWW			ncWW		cWW
16	IL_4IOA_091	4IOA	0.5475	2	Isolated non-canonical cWW with bulges (H)	X	LSU rRNA	G	2553	C	2554	G	2557	*	C	2489	U	2490	C	2491	cWW			ncWW		cWW
17	IL_5TBW_108	5TBW	0.5548	2	Isolated non-canonical cWW with bulges	1	LSU rRNA	G	2943	U	2944	G	2947	*	C	2879	U	2880	C	2881	cWW			cwW		cWW
18	IL_4V9F_097	4V9F	0.4955	1	Isolated non-canonical cWW with bulges	0	LSU rRNA	G	2900	C	2901	C	2903	*	G	2855	A	2856	C	2857	cWW			ncWW		cWW
19	IL_4IOA_104	4IOA	0.5311	1		Y	5S rRNA	G	66	C	67	G	69	*	C	19	A	20	C	21	cWW			cWW		cWW
20	IL_5ML7_010	5ML7	0.4352	1	Isolated non-canonical cWW with bulges	B	23S ribosomal RNA	G	2196	C	2197	A	2199	*	U	2181	A	2182	C	2183	cWW			cWW		cWW
21	IL_3KTW_002	3KTW	0.4867	1	Isolated non-canonical cWW with bulges	C	SRP RNA	A	177	U	178	C	180	*	G	152	G	153	U	154	cWW	ncSH		cWW		ncWW
22	IL_1WNE_001	1WNE	0.5256	0		C+B	RNA (5-mer)	G	917	C	918	C	919	*	G	906	G	907	C	908	cWW					cWW
23	IL_5M0H_002	5M0H	0.5356	2	Multiple bulged bases, near cWW	A	ASH1 E3 (42 nt-TL/TLR)	G	8	U	11	C	12	*	G	34	A	35	C	36	ncWW			cWW		cWW
24	IL_4V88_455	4V88	0.4398	1	Isolated non-canonical cWW pair	A6	SSU rRNA	C	1339	A	1341	C	1342	*	G	1383	A	1384	G	1385	cWW			ncwW		cWW
25	IL_4IOA_044	4IOA	0.5134	0	Isolated non-canonical cWW pair (H)	X	LSU rRNA	C	1252	C	1253	G	1254	*	C	1218	C	1219	G	1220	cWW			ncBW		cWW
26	IL_4V9F_023	4V9F	0.3767	0	Isolated non-canonical cWW pair	0	LSU rRNA	C	899	U	900	G	901	*	C	763	C	764	G	765	cWW			cWW		cWW
27	IL_5TBW_008	5TBW	0.4324	0	Isolated non-canonical cWW pair	1	LSU rRNA	C	125	U	126	G	127	*	C	141	C	142	G	143	cWW			cWW		cWW
28	IL_3RW6_004	3RW6	0.4104	0	Isolated non-canonical cWW pair	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	C	33	U	34	G	35	*	C	24	C	25	G	26	cWW			cWW		cWW
29	IL_5UNE_006	5UNE	0.4465	0	Isolated non-canonical cWW pair	A+B	RNA (47-MER)	C	27	A	28	G	29	*	U	16	A	17	G	18	cWW			cwW		cWW
30	IL_4KYY_002	4KYY	0.4963	0	Isolated non-canonical cWW pair	A+B	RNA 17-mer	U	8	U	9	G	10	*	U	8	U	9	G	10	cWW					cWW
31	IL_4V88_470	4V88	0.4104	0	Isolated non-canonical cWW pair	A6	SSU rRNA	U	1734	U	1735	G	1736	*	U	1665	U	1666	A	1667	cWW					cWW
32	IL_4IOA_109	4IOA	0.4427	0	Isolated non-canonical cWW pair (H)	Y	5S rRNA	C	97	C	98	G	99	*	U	82	C	83	G	84	cWW			cWB		cWW
33	IL_3GLP_001	3GLP	0.3888	0		B+A	RNA (8-mer)	C	5\|\|A	U	6	G	7	*	C	2	U	3	G	4	cWW					cWW
34	IL_4WF9_055	4WF9	0.3584	0		X	LSU rRNA	C	1622	U	1623	C	1624	*	G	1465	G	1466	G	1467	cWW					cWW
35	IL_4P3U_001	4P3U	0.3335	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7	cWW					cWW
36	IL_4M4O_001	4M4O	0.3545	0	Isolated non-canonical cWW pair	B	RNA (59-MER)	C	6	A	7	U	8	*	A	52	C	53	G	54	cWW			cWWa		cWW
37	IL_2R8S_001	2R8S	0.3248	0	Isolated non-canonical cWW pair	R	P4-P6 RNA RIBOZYME DOMAIN	C	208	A	210	C	211	*	G	110	G	111	G	112	cWW			cWW		cWW
38	IL_1N33_070	1N33	0.3214	0		Z+Y	A-SITE MESSENGER RNA FRAGMENT	U	1	U	2	U	3	*	G	34	G	35	A	36	cWW			ncWWa		cWW
39	IL_5TBW_042	5TBW	0.2929	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	1009	G	1010	A	1011	*	U	1039	A	1040	U	1041	cWW			cWW		cWW
40	IL_4V88_444	4V88	0.3791	0	Isolated non-canonical cWW pair	A6	SSU rRNA	G	1464	C	1465	G	1466	*	C	1173	C	1174	U	1175	cWW			ncBW		cWW
41	IL_5TBW_044	5TBW	0.4346	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	1087	U	1088	G	1089	*	C	1069	U	1070	U	1071	cWW				ncWw	cWW
42	IL_5TBW_127	5TBW	0.3161	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	3252	G	3253	G	3254	*	C	3233	A	3234	C	3235	cWW			cWW		cWW
43	IL_3DIL_006	3DIL	0.2864	0	Isolated non-canonical cWW pair	A	RNA (174-MER)	G	115	G	116	G	117	*	C	137	A	138	C	139	cWW			cWW		cWW
44	IL_3D0U_006	3D0U	0.2663	0	Isolated non-canonical cWW pair	A	Lysine Riboswitch RNA	G	112	G	113	G	114	*	C	134	A	135	C	136	cWW			cWW		cWW
45	IL_5MSF_005	5MSF	0.2842	1		R	RNA (18-mer)	G	3\|\|\|\|P_P	G	4\|\|\|\|P_P	G	6\|\|\|\|P_P	*	C	13\|\|\|\|P_P	A	14\|\|\|\|P_P	C	15\|\|\|\|P_P
46	IL_5MSF_001	5MSF	0.2842	1	Isolated non-canonical cWW pair	R	RNA (18-mer)	G	3\|\|\|\|P_1	G	4\|\|\|\|P_1	G	6\|\|\|\|P_1	*	C	13\|\|\|\|P_1	A	14\|\|\|\|P_1	C	15\|\|\|\|P_1	cWW			cWW		cWW
47	IL_4LFB_010	4LFB	0.3279	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	190\|\|\|K	U	190\|\|\|L	G	191	*	C	186	C	187	C	188	cWW			cWW		cWW
48	IL_4V9F_017	4V9F	0.3119	0	Isolated non-canonical cWW pair	0	LSU rRNA	A	597	C	598	G	599	*	C	558	U	559	U	560	cWW			cWW		cWW
49	IL_4WF9_083	4WF9	0.2381	0	Isolated non-canonical cWW pair	X	LSU rRNA	A	2260	A	2261	G	2262	*	C	2111	C	2112	U	2113	cWW			ncWWa		cWW
50	IL_5TBW_378	5TBW	0.3216	1	Isolated non-canonical cWW pair	AS	5S rRNA	A	84	G	85	G	87	*	C	94	A	95	U	96	cWW			cWW		cWW
51	IL_4YHW_001	4YHW	0.1999	0	Isolated non-canonical cWW pair	C+E	U4 snRNA fragment + U6 snRNA fragment	A	11	C	12	G	13	*	C	68	C	69	U	70	cWW					cWW
52	IL_353D_001	353D	0.2327	0		A+B	RNA (12-mer)	G	8	U	9	G	10	*	U	15	G	16	C	17	cWW			ncWWa		cWW
53	IL_4AOB_005	4AOB	0.2895	0	Isolated non-canonical cWW pair	A	SAM-I riboswitch	G	71	A	72	G	73	*	C	78	G	79	U	80	cWW			ncWW		cWW
54	IL_4AOB_010	4AOB	0.2895	0		A	SAM-I riboswitch	G	71\|\|\|\|7_555	A	72\|\|\|\|7_555	G	73\|\|\|\|7_555	*	C	78\|\|\|\|7_555	G	79\|\|\|\|7_555	U	80\|\|\|\|7_555	cWW			ncWW		cWW
55	IL_5TBW_110	5TBW	0.3095	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	2912	C	2913	G	2914	*	C	2889	A	2890	U	2891	cWW			ncWWa		cWW
56	IL_4LFB_059	4LFB	0.3259	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1486	G	1487	G	1488	*	C	1412	A	1413	U	1414	cWW			cWW		cWW
57	IL_5J7L_061	5J7L	0.3102	0	Isolated non-canonical cWW pair	AA	SSU rRNA	G	1486	G	1487	G	1488	*	C	1412	A	1413	U	1414	cWW			cWW		cWW
58	IL_5E81_376	5E81	0.2347	0		3L	tRNA	G	27	U	28	U	29	*	A	41	A	42	U	43	ncWW			ncWW		cWW
59	IL_3GM7_001	3GM7	0.1582	0	Isolated non-canonical cWW pair	H+G	RNA (18-mer)	C	16	U	17	G	18	*	C	1	U	2	G	3	cWW					cWW
60	IL_2ZKO_001	2ZKO	0.1670	0	Isolated non-canonical cWW pair	D+C	RNA (21-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11	cWW					cWW
61	IL_3GM7_005	3GM7	0.2278	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	13	U	14	G	15	*	C	4	U	5	G	6	cWW					cWW
62	IL_5MWI_004	5MWI	0.2559	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	14\|\|\|\|4_555	U	15\|\|A\|\|4_555	G	16\|\|\|\|4_555	*	C	11	U	12\|\|A	G	13	cWW					cWW
63	IL_5MWI_005	5MWI	0.2559	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	14	U	15\|\|A	G	16	*	C	11\|\|\|\|4_555	U	12\|\|A\|\|4_555	G	13\|\|\|\|4_555	cWW					cWW
64	IL_5MWI_007	5MWI	0.2359	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	20	U	21	G	22	*	C	5\|\|\|\|4_555	U	6\|\|\|\|4_555	G	7\|\|\|\|4_555	cWW					cWW
65	IL_5MWI_002	5MWI	0.2359	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	20\|\|\|\|4_555	U	21\|\|\|\|4_555	G	22\|\|\|\|4_555	*	C	5	U	6	G	7	cWW					cWW
66	IL_3SZX_001	3SZX	0.2529	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	C	7	U	8	G	9	*	C	13	U	14	G	15	cWW					cWW
67	IL_4E48_001	4E48	0.2696	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	2	U	3	G	4	*	C	37	U	38	G	39	cWW					cWW
68	IL_4E48_002	4E48	0.2601	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	34	U	35	G	36	*	C	5	U	6	G	7	cWW					cWW
69	IL_4E48_004	4E48	0.2584	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	28	U	29	G	30	*	C	11	U	12	G	13	cWW			ncwW		cWW
70	IL_1UN6_005	1UN6	0.2262	0	Isolated non-canonical cWW pair	F	5S RIBOSOMAL RNA	C	79	U	80	G	81	*	C	95	U	96	G	97	cWW			ncwW		cWW
71	IL_3GM7_003	3GM7	0.2057	0	Isolated non-canonical cWW pair	H+G	RNA (18-mer)	C	10	U	11	G	12	*	C	7	U	8	G	9	cWW			ncwW		cWW
72	IL_3GM7_006	3GM7	0.1704	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	16	U	17	G	18	*	C	1	U	2	G	3	cWW			ncwW		cWW
73	IL_5VCI_002	5VCI	0.1990	0	Isolated non-canonical cWW pair	B+A	RNA (12-mer)	C	7	U	8	G	9	*	C	4	U	5	G	6	cWW			ncwW		cWW
74	IL_3GM7_004	3GM7	0.2450	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	10	U	11	G	12	*	C	7	U	8	G	9	cWW			ncwW		cWW
75	IL_3GM7_002	3GM7	0.2027	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	4	U	5	G	6	*	C	13	U	14	G	15	cWW					cWW
76	IL_4E59_002	4E59	0.2030	0		B+A	RNA duplex containing CCG repeats	C	2\|\|\|\|2_555	C	3\|\|\|\|2_555	G	4\|\|\|\|2_555	*	C	2\|\|\|\|2_555	C	3\|\|\|\|2_555	G	4\|\|\|\|2_555	cWW			ncWB		cWW
77	IL_4E59_001	4E59	0.2030	0	Isolated non-canonical cWW pair	B+A	RNA duplex containing CCG repeats	C	2	C	3	G	4	*	C	2	C	3	G	4	cWW			ncWB		cWW
78	IL_4E59_003	4E59	0.2030	0		B+A	RNA duplex containing CCG repeats	C	2\|\|\|\|3_555	C	3\|\|\|\|3_555	G	4\|\|\|\|3_555	*	C	2\|\|\|\|3_555	C	3\|\|\|\|3_555	G	4\|\|\|\|3_555	cWW			ncWB		cWW
79	IL_4E48_005	4E48	0.2253	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	14	U	15	G	16	*	C	25	U	26	G	27	cWW					cWW
80	IL_5MWI_003	5MWI	0.2093	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	17\|\|\|\|4_555	U	18\|\|\|\|4_555	G	19\|\|\|\|4_555	*	C	8	U	9	G	10	cWW					cWW
81	IL_5MWI_006	5MWI	0.2093	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	17	U	18	G	19	*	C	8\|\|\|\|4_555	U	9\|\|\|\|4_555	G	10\|\|\|\|4_555	cWW					cWW
82	IL_4E48_003	4E48	0.2287	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	8	U	9	G	10	*	C	31	U	32	G	33	cWW					cWW
83	IL_3GLP_002	3GLP	0.2650	0		B+A	RNA (8-mer)	C	2\|\|A	U	3\|\|A	G	4	*	C	5	U	6	G	7	cWW			ncwW
84	IL_1RPU_001	1RPU	0.2717	0	Isolated non-canonical cWW pair	C+D	RNA (21-mer)	U	9\|\|A	C	10\|\|A	A	11\|\|A	*	U	9\|\|A	C	10\|\|A	A	11\|\|A	cWW			ncWB		cWW
85	IL_2Q1R_002	2Q1R	0.2691	0		A	RNA (12-mer)	U	1008	A	1009	G	1010	*	C	1003\|\|\|\|2_755	G	1004\|\|\|\|2_755	A	1005\|\|\|\|2_755	cWW			cWW		cWW
86	IL_4Y4O_194	4Y4O	0.2884	0		2A	LSU rRNA	C	672	C	673	G	674	*	C	806	U	807	G	808	cWW			cWW		cWW
87	IL_5J7L_259	5J7L	0.2854	0	Isolated non-canonical cWW pair	DA	LSU rRNA	C	672	C	673	G	674	*	C	806	U	807	G	808	cWW			cWW		cWW
88	IL_4IOA_013	4IOA	0.2887	0		X	LSU rRNA	U	685	C	686	G	687	*	C	819	U	820	A	821	cWW			cWW		cWW
89	IL_4WF9_020	4WF9	0.2688	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	717	C	718	G	719	*	C	851	U	852	G	853	cWW			cWW		cWW
90	IL_5TBW_027	5TBW	0.3141	0	Isolated non-canonical cWW pair	1	LSU rRNA	C	803	C	804	G	805	*	C	938	U	939	G	940	cWW			cWW		cWW
91	IL_4LFB_006	4LFB	0.2703	0	Isolated non-canonical cWW pair	A	SSU rRNA	C	99	A	101	G	102	*	C	67	G	68	G	69	cWW			cWW		cWW
92	IL_5UNE_001	5UNE	0.3017	0	Isolated non-canonical cWW contact	A+B	RNA (47-MER)	U	7	G	8	A	9	*	U	39	G	40	G	41	cWW			ncwW		cWW
93	IL_4V88_385	4V88	0.2296	0	Isolated non-canonical cWW pair	A6	SSU rRNA	U	35	C	36	U	37	*	A	471	U	472	A	473	cWW			cWW		cWW
94	IL_5Z1I_001	5Z1I	0.1752	0	Isolated non-canonical cWW pair	A	RNA (21-mer)	G	19\|\|\|\|8_555	U	20\|\|\|\|8_555	C	21\|\|\|\|8_555	*	G	5	U	6	C	7	cWW			cwW		cWW
95	IL_5Z1I_004	5Z1I	0.1752	0	Isolated non-canonical cWW pair	A	RNA (21-mer)	G	19	U	20	C	21	*	G	5\|\|\|\|8_555	U	6\|\|\|\|8_555	C	7\|\|\|\|8_555	cWW			cwW		cWW
96	IL_5ZEI_004	5ZEI	0.1612	0		A+B	RNA (22-mer) + RNA (21-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30	cWW			cwW		cWW
97	IL_5ZEI_001	5ZEI	0.1362	0		B+A	RNA (21-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7	cWW			ncwW		cWW
98	IL_5ZEJ_001	5ZEJ	0.2025	0		B+A	RNA (22-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7	cWW			ncwW		cWW
99	IL_1ZZ5_002	1ZZ5	0.2791	0	Isolated non-canonical cWW pair	A+B	RNA (15-mer) + RNA (14-mer)	G	10	U	11	C	12	*	G	24	U	25	C	26	cWW			ncWw		cWW
100	IL_1ZZ5_004	1ZZ5	0.2518	0	Isolated non-canonical cWW pair	C+D	RNA (15-mer) + RNA (14-mer)	G	10	U	11	C	12	*	G	24	U	25	C	26	cWW			ncWw		cWW
101	IL_4ZC7_004	4ZC7	0.2231	0	Isolated non-canonical cWW pair	A+B	RNA duplex	G	19	U	20	C	21	*	G	28	U	29	C	30	cWW			ncWw		cWW
102	IL_3SZX_002	3SZX	0.2046	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	C	10	U	11	G	12	*	C	10	U	11	G	12	cWW			ncWw		cWW
103	IL_4E48_006	4E48	0.1907	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	22	U	23	G	24	*	C	17	U	18	G	19	cWW			ncwW		cWW
104	IL_4KNQ_002	4KNQ	0.2010	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	207	C	208	G	209	*	C	213\|\|\|\|4_555	C	214\|\|\|\|4_555	G	215\|\|\|\|4_555	cWW					cWW
105	IL_4KNQ_004	4KNQ	0.2010	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	207\|\|\|\|4_555	C	208\|\|\|\|4_555	G	209\|\|\|\|4_555	*	C	213	C	214	G	215	cWW					cWW
106	IL_4JGN_002	4JGN	0.1396	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	508	U	509	G	510	*	C	514\|\|\|\|4_555	U	515\|\|\|\|4_555	G	516\|\|\|\|4_555	cWW			ncwW		cWW
107	IL_4JGN_004	4JGN	0.1396	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	508\|\|\|\|4_555	U	509\|\|\|\|4_555	G	510\|\|\|\|4_555	*	C	514	U	515	G	516	cWW			ncwW		cWW
108	IL_4JGN_005	4JGN	0.1444	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	517	U	518	G	519	*	C	505\|\|\|\|4_555	U	506\|\|\|\|4_555	G	507\|\|\|\|4_555	cWW			cwW		cWW
109	IL_4JGN_001	4JGN	0.1444	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	517\|\|\|\|4_555	U	518\|\|\|\|4_555	G	519\|\|\|\|4_555	*	C	505	U	506	G	507	cWW			cwW		cWW
110	IL_4KNQ_005	4KNQ	0.1566	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	216	C	217	G	218	*	C	204\|\|\|\|4_555	C	205\|\|\|\|4_555	G	206\|\|\|\|4_555	cWW			cWw		cWW
111	IL_4KNQ_001	4KNQ	0.1566	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	216\|\|\|\|4_555	C	217\|\|\|\|4_555	G	218\|\|\|\|4_555	*	C	204	C	205	G	206	cWW			cWw		cWW
112	IL_1ZH5_001	1ZH5	0.1788	0	Isolated non-canonical cWW pair	C+D	RNA (9-mer)	C	3	U	4	G	5	*	C	3	U	4	G	5	cWW			ncwW		cWW
113	IL_4IOA_030	4IOA	0.1866	0	Isolated non-canonical cWW pair	X	LSU rRNA	U	974	C	975	C	976	*	G	963	A	964	G	965	cWW			cWW		cWW
114	IL_6D06_001	6D06	0.1478	0		C+B	RNA (23-mer)	C	8	C	9	C	10	*	G	14	A	15	G	16	cWW			cWW		cWW
115	IL_5ED2_004	5ED2	0.1080	0	Isolated non-canonical cWW pair	F+E	RNA (23-mer)	C	8	C	9	C	10	*	G	14	A	15	G	16	cWW			cWW		cWW
116	IL_6IA2_002	6IA2	0.0000	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	C	7	C	8	C	9	*	G	11\|\|A	A	12	G	13	cWW			cWW		cWW
117	IL_6IA2_005	6IA2	0.0640	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	C	16	C	17	C	18	*	G	2	A	3	G	4	cWW			cWW		cWW
118	IL_4LFB_061	4LFB	0.1366	0	Isolated non-canonical cWW pair	A	SSU rRNA	C	1424	U	1425	C	1426	*	G	1474	G	1475	G	1476	cWW			ncWW		cWW
119	IL_4P3T_005	4P3T	0.1290	1	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	C	30	C	31	C	32	*	G	16	A	18	G	19	cWW			cWW		cWW
120	IL_6IA2_004	6IA2	0.1335	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	7	C	8	C	9	*	G	11	A	12	G	13	cWW			cWW		cWW
121	IL_1KFO_002	1KFO	0.2022	0	Isolated non-canonical cWW pair	A	RNA (19-mer)	C	6	C	7	U	8	*	G	11\|\|\|\|8_555	A	12\|\|\|\|8_555	G	13\|\|\|\|8_555	cWW			cWW		cWW
122	IL_1KFO_003	1KFO	0.2022	0	Isolated non-canonical cWW pair	A	RNA (19-mer)	C	6\|\|\|\|8_555	C	7\|\|\|\|8_555	U	8\|\|\|\|8_555	*	G	11	A	12	G	13	cWW			cWW		cWW
123	IL_6IA2_001	6IA2	0.1231	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	16	C	17	C	18	*	G	2	A	3	G	4	cWW			cWW		cWW
124	IL_4TS2_004	4TS2	0.1883	0	Isolated non-canonical cWW pair	Y+X	Spinach aptamer RNA, bimolecular construct	C	77	U	78	C	79	*	G	20	U	21	G	22	cWW			cwW		cWW
125	IL_4Y1M_005	4Y1M	0.3161	0	Isolated non-canonical cWW pair	B	E. coli yybP-ykoY riboswitch	U	4	U	5	U	6	*	A	103	U	104	A	105	cWW			ncwW		cWW
126	IL_4V88_465	4V88	0.3246	0	Isolated non-canonical cWW pair	A6	SSU rRNA	G	1757	U	1758	C	1759	*	G	1642	U	1643	C	1644	cWW					cWW
127	IL_5M0H_001	5M0H	0.3935	1	Other IL	A	ASH1 E3 (42 nt-TL/TLR)	A	4	A	5	U	7	*	A	37	U	38	U	39	cWW					cWW
128	IL_4V83_235	4V83	0.3107	0	Isolated non-canonical cWW pair	CV	domain 3 of PSIC IGR IRES RNA	G	6173	U	6174	G	6175	*	C	6153	U	6154	C	6155	cWW			ncwW		cWW
129	IL_4WF9_017	4WF9	0.2916	0	Isolated non-canonical cWW pair	X	LSU rRNA	A	618	U	619	G	620	*	C	607	C	608	U	609	cWW			cWW		cWW
130	IL_4Y4O_192	4Y4O	0.3297	0		2A	LSU rRNA	A	575	U	576	G	577	*	C	564	C	565	U	566	cWW			cWW		cWW
131	IL_5J7L_257	5J7L	0.3476	0	Isolated non-canonical cWW pair	DA	LSU rRNA	A	575	U	576	G	577	*	C	564	C	565	U	566	cWW			cWW		cWW
132	IL_4IOA_010	4IOA	0.3595	0	Isolated non-canonical cWW pair (H)	X	LSU rRNA	A	584	U	585	G	586	*	C	573	C	574	U	575	cWW			cWW		cWW
133	IL_4V88_398	4V88	0.2595	0	Isolated non-canonical cWW pair	A6	SSU rRNA	A	206	U	207	U	208	*	A	257	C	258	U	259	cWW			cWW		cWW
134	IL_5VCI_001	5VCI	0.2551	0	Isolated non-canonical cWW pair	B+A	RNA (12-mer)	C	10	U	11	G	12	*	C	1	U	2	G	3	cWW			cwW		cWW
135	IL_4PCJ_001	4PCJ	0.2672	0	Isolated non-canonical cWW pair	A	trCUG-3('5)	C	33	U	34	G	35	*	C	1	U	2	G	3	cWW			cwW		cWW
136	IL_5MWI_008	5MWI	0.2188	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	23	U	24	G	25	*	C	2\|\|\|\|4_555	U	3\|\|\|\|4_555	G	4\|\|\|\|4_555	cWW			cwW		cWW
137	IL_5MWI_001	5MWI	0.2188	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	23\|\|\|\|4_555	U	24\|\|\|\|4_555	G	25\|\|\|\|4_555	*	C	2	U	3	G	4	cWW			cwW		cWW
138	IL_1MZP_001	1MZP	0.2767	0	Isolated non-canonical cWW pair	B	fragment of 23S rRNA	A	4	U	5	G	6	*	C	50	U	51	U	52	cWW			cwW		cWW
139	IL_3RG5_003	3RG5	0.2459	0		B	Selenocysteine transfer RNA	A	5\|\|\|B\|1_556	U	6\|\|\|\|1_556	G	7\|\|\|\|1_556	*	C	66\|\|\|\|1_556	U	67\|\|\|\|1_556	U	67\|\|\|A\|1_556	cWW			cwW		cWW
140	IL_3RG5_002	3RG5	0.2459	0	Isolated non-canonical cWW pair	B	Selenocysteine transfer RNA	A	5\|\|\|B	U	6	G	7	*	C	66	U	67	U	67\|\|\|A	cWW			cwW		cWW
141	IL_4ZDO_001	4ZDO	0.2329	0	Isolated non-canonical cWW pair (H)	E	Selenocysteine transfer RNA	A	5\|\|A\|C	U	6\|\|A	G	7\|\|A	*	C	65\|\|A	U	66\|\|A	U	67\|\|A\|A	cWW			cwW		cWW
142	IL_4KZD_003	4KZD	0.2652	0	Isolated non-canonical cWW pair	R	RNA (84-MER)	G	17	U	18	G	19	*	C	66	U	67	C	68	cWW			cwW		cWW
143	IL_3BNT_006	3BNT	0.2612	0	Isolated non-canonical cWW pair	A	A site of human mitochondrial ribosome	G	4\|\|\|\|4_665	U	5\|\|\|\|4_665	C	6\|\|\|\|4_665	*	G	18	U	19	C	20	cWW			cwW		cWW
144	IL_3BNT_001	3BNT	0.2612	0	Isolated non-canonical cWW pair	A	A site of human mitochondrial ribosome	G	4	U	5	C	6	*	G	18\|\|\|\|4_665	U	19\|\|\|\|4_665	C	20\|\|\|\|4_665	cWW			cwW		cWW
145	IL_2ET8_004	2ET8	0.2562	0	Isolated non-canonical cWW pair	B+A	RNA (22-mer)	G	27	U	28	C	29	*	G	18	U	19	C	20	cWW			cwW		cWW
146	IL_4V88_426	4V88	0.3211	1	Isolated non-canonical cWW pair	A6	SSU rRNA	A	850	U	851	C	852	*	G	819	U	821	U	822	cWW			cwW		cWW
147	IL_5TBW_016	5TBW	0.3086	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	628	U	629	A	630	*	U	429	U	430	U	431	cWW					cWW
148	IL_1U9S_007	1U9S	0.2801	0	Isolated non-canonical cWW pair	A	RIBONUCLEASE P	G	177	C	178	G	179	*	C	191	A	192	C	193	cWW			cWW		cWW
149	IL_5AOX_001	5AOX	0.3112	0	Isolated non-canonical cWW pair	C	ALU JO CONSENSUS RNA	G	9	C	10	G	11	*	C	18	A	19	C	20	cWW			cWW		cWW
150	IL_5TBW_034	5TBW	0.2182	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	965	U	966	A	967	*	U	954	U	955	U	956	cWW			cwW		cWW
151	IL_5TBW_122	5TBW	0.2616	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	3168	U	3169	A	3170	*	U	3280	U	3281	U	3282	cWW			cwW		cWW
152	IL_4V9F_047	4V9F	0.2512	0	Isolated non-canonical cWW pair	0	LSU rRNA	G	1349	U	1350	G	1351	*	C	1303	U	1304	C	1305	cWW			cwW		cWW
153	IL_3U4M_001	3U4M	0.1875	0	Isolated non-canonical cWW pair	B	LSU rRNA	A	2108	U	2109	G	2110	*	C	2179	U	2180	U	2181	cWW			cwW		cWW
154	IL_5OB3_001	5OB3	0.2526	0		A	RNA aptamer (69-MER)	G	10	U	11	G	12	*	C	58	U	59	C	60	cWW			cwW		cWW
155	IL_1U6B_005	1U6B	0.2165	0	Isolated non-canonical cWW pair	B	197-MER	A	117	U	118	G	119	*	C	100	U	101	U	102	cWW			cwW		cWW
156	IL_4V9F_105	4V9F	0.2400	0	Isolated non-canonical cWW pair	9	5S rRNA	C	107	C	108	G	109	*	C	72	A	73	G	74	cWW			cWW		cWW
157	IL_4WF9_042	4WF9	0.2360	0	Isolated non-canonical cWW pair	X	LSU rRNA	G	1081	C	1082	G	1083	*	C	1160	A	1161	C	1162	cWW			ncWW		cWW
158	IL_4IOA_025	4IOA	0.2607	0		X	LSU rRNA	A	936	C	937	G	938	*	C	864	A	865	U	866	cWW			cWW		cWW
159	IL_4P3U_012	4P3U	0.1923	0	Isolated non-canonical cWW pair	C+D	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30	cWW			ncwW		cWW
160	IL_4V88_467	4V88	0.2216	0	Isolated non-canonical cWW pair	A6	SSU rRNA	G	1748	A	1749	A	1750	*	U	1650	A	1651	C	1652	cWW			cwW		cWW
161	IL_5ED1_002	5ED1	0.2079	0	Isolated non-canonical cWW pair	C+B	RNA (23-mer)	G	9	A	10	C	11	*	G	13	A	14	C	15	cWW			cwW		cWW
162	IL_2ZNI_001	2ZNI	0.2305	0		C	bacterial tRNA	U	39	U	40	C	41	*	G	29	G	30	A	31	cWW			ncWWa		cWW
163	IL_4ZC7_001	4ZC7	0.2446	0	Isolated non-canonical cWW pair	B+A	RNA duplex	G	42	U	43	C	44	*	G	5	U	6	C	7	cWW			ncWw		cWW
164	IL_3LA5_001	3LA5	0.2875	0		A	Purine riboswitch	U	16	U	17	C	18	*	G	78	G	79	A	80	cWW			ncWW		cWW
165	IL_3TD0_001	3TD0	0.2468	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7	cWW			ncwW		cWW
166	IL_1ZX7_006	1ZX7	0.2840	0	Isolated non-canonical cWW pair	E+F	RNA (15-mer) + RNA (14-mer)	G	10	U	11	C	12	*	G	24	U	25	C	26	cWW			cwW		cWW
167	IL_5TBW_112	5TBW	0.2444	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	2926	C	2927	C	2928	*	G	2918	A	2919	U	2920	cWW			cWW		cWW
168	IL_1YZ9_002	1YZ9	0.2132	0	Isolated non-canonical cWW pair	F+E	RNA (11-mer)	A	15	C	16	U	17	*	A	4	C	5	U	6	cWW			ncWB		cWW
169	IL_1YZ9_001	1YZ9	0.2078	0	Isolated non-canonical cWW pair	C+D	RNA (11-mer)	A	4	C	5	U	6	*	A	15	C	16	U	17	cWW			ncWB		cWW
170	IL_4V88_417	4V88	0.2387	0	Isolated non-canonical cWW pair	A6	SSU rRNA	G	624	C	625	U	626	*	A	973	A	974	C	975	cWW			cWW		cWW
171	IL_5CCB_002	5CCB	0.2807	0		N	tRNA	A	31\|\|\|\|7_555	C	32\|\|\|\|7_555	U	33\|\|\|\|7_555	*	A	37\|\|\|\|7_555	A	38\|\|\|\|7_555	U	39\|\|\|\|7_555	cWW			cWW		cWW
172	IL_5CCB_001	5CCB	0.2807	0	Isolated non-canonical cWW pair	N	tRNA	A	31	C	32	U	33	*	A	37	A	38	U	39	cWW			cWW		cWW
173	IL_1Z7F_002	1Z7F	0.2544	0	Isolated non-canonical cWW pair	A	RNA (16-mer)	A	5\|\|\|\|6_765	C	6\|\|\|\|6_765	U	7\|\|\|\|6_765	*	A	10	A	11	U	12	cWW			cWW		cWW
174	IL_5TBW_079	5TBW	0.2738	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	1940	C	1941	U	1942	*	A	2106	A	2107	C	2108	cWW			cWW		cWW
175	IL_5Y85_006	5Y85	0.2939	0	Isolated non-canonical cWW pair	D+C	DNA/RNA (50-MER)	G	4	C	5	C	6	*	G	13	A	14	C	15	cWW			cWW		cWW
176	IL_3MEI_002	3MEI	0.2782	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	13	C	14	C	15	*	G	8	C	9	C	10	cWW			ncWB		cWW
177	IL_5Y7M_007	5Y7M	0.2932	0	Isolated non-canonical cWW pair	D	RNA (52-MER)	A	11	C	12	C	13	*	G	37	A	38	U	39	cWW			cWW		cWW
178	IL_4V88_446	4V88	0.2819	0	Isolated non-canonical cWW pair	A6	SSU rRNA	G	1448	U	1449	U	1450	*	G	1213	U	1214	C	1215	cWW			ncwW		cWW
179	IL_1T0E_002	1T0E	0.2570	0	Isolated non-canonical cWW pair	A+C	RNA (18-mer) + RNA (17-mer)	G	10\|\|A	U	11	C	12	*	G	14	U	15	C	16	cWW			cwW		cWW
180	IL_1ZX7_004	1ZX7	0.2719	0	Isolated non-canonical cWW pair	C+D	RNA (15-mer) + RNA (14-mer)	G	10	U	11	C	12	*	G	24	U	25	C	26	cWW			cwW		cWW
181	IL_4P43_004	4P43	0.1929	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30	cWW			cwW		cWW
182	IL_5B2P_001	5B2P	0.2033	0	Isolated non-canonical cWW pair	B	Guide RNA	U	24	U	25	C	26	*	G	48	U	49	A	50	cWW			cwW		cWW
183	IL_5TBW_115	5TBW	0.1441	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	3012	U	3013	U	3014	*	A	3040	U	3041	U	3042	cWW			cwW		cWW
184	IL_2O3V_004	2O3V	0.1853	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21	cWW			cwW		cWW
185	IL_3BNR_007	3BNR	0.1982	0	Isolated non-canonical cWW pair	C+D	A site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain three	G	5	U	6	C	7	*	G	17	U	18	C	19	cWW			cwW		cWW
186	IL_5ZEG_005	5ZEG	0.1763	0		C	RNA (23-mer)	G	5	U	6	C	7	*	G	19\|\|\|\|2_555	U	20\|\|\|\|2_555	C	21\|\|\|\|2_555	cWW			cwW		cWW
187	IL_5ZEG_008	5ZEG	0.1763	0		C	RNA (23-mer)	G	5\|\|\|\|2_555	U	6\|\|\|\|2_555	C	7\|\|\|\|2_555	*	G	19	U	20	C	21	cWW			cwW		cWW
188	IL_5WTI_002	5WTI	0.1932	0	Isolated non-canonical cWW pair	B	RNA (123-MER)	G	10	U	11	C	12	*	G	18	U	19	C	20	cWW			cwW		cWW
189	IL_2O3V_001	2O3V	0.1941	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44	cWW			cwW		cWW
190	IL_5ZEG_004	5ZEG	0.1881	0		B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21	cWW			cwW		cWW
191	IL_2O3X_004	2O3X	0.2148	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21	cWW			cwW		cWW
192	IL_1MFQ_002	1MFQ	0.2599	0	Isolated non-canonical cWW pair	A	SRP RNA	A	228	U	229	C	230	*	G	120	U	121	U	122	cWW			cwW		cWW
193	IL_4NGF_002	4NGF	0.2895	0	Isolated non-canonical cWW pair	G+H	RNA (17-mer)	G	7	U	8	C	9	*	G	7	U	8	C	9	cWW			ncwW		cWW
194	IL_5ZEJ_004	5ZEJ	0.2631	0		A+B	RNA (22-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30	cWW			ncwW		cWW
195	IL_4P3U_007	4P3U	0.2296	0	Isolated non-canonical cWW pair	D+C	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7	cWW			ncwW		cWW
196	IL_4P3U_006	4P3U	0.2172	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21	cWW			cwW		cWW
197	IL_5ZTM_002	5ZTM	0.1995	0	Isolated non-canonical cWW pair	C	non-coding mRNA sequence roX2	A	123	U	124	C	125	*	G	157	U	158	U	159	cWW			cwW		cWW
198	IL_2O3Y_001	2O3Y	0.2016	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44	cWW			cwW		cWW
199	IL_5ZEG_001	5ZEG	0.1816	0		B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7	cWW			cwW		cWW
200	IL_3TD0_006	3TD0	0.1912	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21	cWW			cwW		cWW
201	IL_2OE5_001	2OE5	0.2032	0	Isolated non-canonical cWW pair	B+A	RNA (17-mer)	G	1494	U	1495	C	1496	*	G	1405	U	1406	C	1407	cWW			cwW		cWW
202	IL_2OE8_001	2OE8	0.2170	0	Isolated non-canonical cWW pair	B+A	RNA (17-mer)	G	1494	U	1495	C	1496	*	G	1405	U	1406	C	1407	cWW			cwW		cWW
203	IL_4P3T_006	4P3T	0.2251	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30	cWW			cwW		cWW
204	IL_2O3Y_004	2O3Y	0.2347	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21	cWW			cwW		cWW
205	IL_3BNN_008	3BNN	0.2441	0	Isolated non-canonical cWW pair	C+D	A site of human ribosome	G	17	U	18	C	19	*	G	3	U	4	C	5	cWW			cwW		cWW
206	IL_3BNR_012	3BNR	0.2557	0	Isolated non-canonical cWW pair	C+D	A site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain three	G	19	U	20	C	21	*	G	3	U	4	C	5	cWW			cwW		cWW
207	IL_3BNN_005	3BNN	0.2823	0	Isolated non-canonical cWW pair	C+D	A site of human ribosome	G	3	U	4	C	5	*	G	17	U	18	C	19	cWW			cwW		cWW
208	IL_4KYY_003	4KYY	0.2430	0	Isolated non-canonical cWW pair	A+B	RNA 17-mer	A	11	U	12	C	13	*	G	5	U	6	U	7	cWW			cwW		cWW
209	IL_4KYY_001	4KYY	0.2194	0	Isolated non-canonical cWW pair	B+A	RNA 17-mer	A	11	U	12	C	13	*	G	5	U	6	U	7	cWW			cwW		cWW
210	IL_4P3T_001	4P3T	0.1867	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44	cWW			ncwW		cWW
211	IL_4K31_001	4K31	0.2516	0	Isolated non-canonical cWW pair	B+C	RNA (23-mer)	G	5	U	6	C	7	*	G	19	U	20	C	21	cWW			cwW		cWW
212	IL_4K31_004	4K31	0.2520	0	Isolated non-canonical cWW pair	C+B	RNA (23-mer)	G	5	U	6	C	7	*	G	19	U	20	C	21	cWW			cwW		cWW
213	IL_4P43_001	4P43	0.2955	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44	cWW			cwW		cWW
214	IL_4LFB_047	4LFB	0.3305	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1061	U	1062	C	1063	*	G	1193	U	1194	C	1195	cWW			cwW		cWW
215	IL_5J7L_050	5J7L	0.3574	0	Isolated non-canonical cWW pair	AA	SSU rRNA	G	1061	U	1062	C	1063	*	G	1193	U	1194	C	1195	cWW			cwW		cWW
216	IL_4V84_071	4V84	0.4134	0		AV	RNA (34-MER)	G	6183	A	6184	U	6185	*	G	6192	U	6193	C	6194	cWW		ncWW	ncWW		cWW
217	IL_5E81_371	5E81	0.3351	0	Self complementary	1K	tRNA	A	41	A	42	U	43	*	G	27	U	28	U	29	cWW			cWW		ncWW
218	IL_5AY2_001	5AY2	0.3202	0	Isolated non-canonical cWW pair	A+B	RNA (12-mer)	A	3	C	4	U	5	*	A	8	C	9	U	10	cWW					cWW
219	IL_5AY2_003	5AY2	0.3159	0	Isolated non-canonical cWW pair	A+B	RNA (12-mer)	A	8	C	9	U	10	*	A	3	C	4	U	5	cWW					cWW
220	IL_4KR9_002	4KR9	0.3696	0		X	RNA (39-MER)	G	28	U	29	C	30	*	G	6	A	7	U	8	cWW			cWW		cWW
221	IL_4KR9_001	4KR9	0.3681	0		M	RNA (39-MER)	G	28	U	29	C	30	*	G	6	A	7	U	8	cWW			cWW		cWW
222	IL_5UNE_003	5UNE	0.3650	0	Isolated non-canonical cWW pair	A+B	RNA (47-MER)	G	12	G	13	C	14	*	G	31	G	32	C	33	cWW					cWW
223	IL_5UNE_007	5UNE	0.3914	0	Isolated non-canonical cWW pair	B+A	RNA (47-MER)	G	12	G	13	C	14	*	G	31	G	32	C	33	ncWW					cWW
224	IL_5TBW_021	5TBW	0.4211	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	668	U	669	C	670	*	G	792	C	793	U	794	cWW			cWW		cWW
225	IL_4IOA_019	4IOA	0.3706	0	Isolated non-canonical cWW pair (H)	X	LSU rRNA	G	754	C	755	C	756	*	G	767	U	768	C	769	cWW			cWW		cWW
226	IL_5TBW_068	5TBW	0.4106	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	1661	G	1662	C	1663	*	G	1786	A	1787	C	1788	cWW			cWW		cWW
227	IL_3HHN_004	3HHN	0.3946	0	Isolated non-canonical cWW pair	E	Class I ligase ribozyme, self-ligation product	G	87	G	88	U	89	*	A	102	A	103	C	104	cWW			cWW		cWW
228	IL_4M4O_002	4M4O	0.3535	0	Isolated non-canonical cWW pair	B	RNA (59-MER)	G	12	G	13	C	14	*	G	46	A	47	C	48	cWW			cWW		cWW
229	IL_4M6D_011	4M6D	0.4142	0	Isolated non-canonical cWW pair	H	aptamer	G	12	G	13	C	14	*	G	46	A	47	C	48	cWW			cWW		ncWW
230	IL_4IOA_079	4IOA	0.3699	0		X	LSU rRNA	G	2078	A	2079	U	2080	*	A	2175	U	2176	U	2177	cWW			ncWW		cWW
231	IL_1NBS_006	1NBS	0.3260	0		B	RNase P class B	G	116	U	117	C	118	*	G	125	G	126	C	127	cWW			ncWW		cWW
232	IL_4V88_424	4V88	0.3259	0	Isolated non-canonical cWW pair	A6	SSU rRNA	A	799	U	800	G	801	*	U	748	U	749	U	750	cWW			cwW		cWW
233	IL_4Y4O_256	4Y4O	0.3188	0		2A	LSU rRNA	C	2085	U	2086	G	2087	*	U	2232	U	2233	G	2234	cWW			cwW		cWW
234	IL_5J7L_326	5J7L	0.3260	0	Isolated non-canonical cWW pair	DA	LSU rRNA	C	2232	U	2233	G	2234	*	U	2085	U	2086	G	2087	cWW			cwW		cWW
235	IL_4IOA_078	4IOA	0.3385	0	Isolated non-canonical cWW pair (H)	X	LSU rRNA	C	2068	U	2069	G	2070	*	U	2211	U	2212	G	2213	cWW			cwW		cWW
236	IL_4V8Q_188	4V8Q	0.2931	0		BY	SsrA	C	20	A	21	G	22	*	U	56	U	57	G	58	cWW			ncWW		ncWW
237	IL_5UNE_004	5UNE	0.3204	0	Isolated non-canonical cWW pair	B+A	RNA (47-MER)	C	27	A	28	G	29	*	U	16	A	17	G	18	cWW			cwW		cWW
238	IL_3ICQ_003	3ICQ	0.1805	0		E	RNA (62-MER)	U	68	U	69	C	70	*	G	3	G	4	A	5	cWW			ncWW		cWW
239	IL_1Y27_001	1Y27	0.2315	0	Isolated non-canonical cWW pair	X	Purine riboswitch	U	25	C	26	G	27	*	C	43	A	44	A	45	cWW			cWW		cWW
240	IL_4V88_433	4V88	0.2157	0	Isolated non-canonical cWW pair	A6	SSU rRNA	U	893	U	894	G	895	*	U	917	U	918	A	919	cWW			cwW		ncWW
241	IL_5J7L_273	5J7L	0.2940	0	Isolated non-canonical cWW pair	DA	LSU rRNA	U	870	U	871	U	872	*	A	905	U	906	G	907	cWW			cwW		cWW
242	IL_4V88_419	4V88	0.3331	0	Isolated non-canonical cWW pair	A6	SSU rRNA	C	686	G	687	G	688	*	C	646	G	647	G	648	cWW					cWW
243	IL_4J50_008	4J50	0.2732	0		B+A	RNA (19-mer)	C	10\|\|\|\|3_555	A	11\|\|\|\|3_555	G	12\|\|\|\|3_555	*	C	10\|\|\|\|3_555	A	11\|\|\|\|3_555	G	12\|\|\|\|3_555	cWW					cWW
244	IL_4J50_002	4J50	0.2732	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	10	A	11	G	12	*	C	10	A	11	G	12	cWW					cWW
245	IL_4J50_005	4J50	0.2732	0		B+A	RNA (19-mer)	C	10\|\|\|\|2_555	A	11\|\|\|\|2_555	G	12\|\|\|\|2_555	*	C	10\|\|\|\|2_555	A	11\|\|\|\|2_555	G	12\|\|\|\|2_555	cWW					cWW
246	IL_4Y4O_211	4Y4O	0.2922	0	Isolated non-canonical cWW pair	2A	LSU rRNA	G	952	A	953	G	954	*	U	963	C	964	C	965	cWW			cWW		cWW
247	IL_5UNE_009	5UNE	0.2953	0	Isolated non-canonical cWW contact	A+B	RNA (47-MER)	U	39	G	40	G	41	*	U	7	G	8	A	9	cWW					ncWW
248	IL_3SZX_003	3SZX	0.2674	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	7	U	8	G	9	*	C	13	U	14	G	15	cWW			ncWw		cWW
249	IL_4V9K_064	4V9K	0.2950	0	Isolated non-canonical cWW pair	AW	tRNA	C	50	A	51	G	52	*	C	62	C	63	G	64	cWW			ncWWa		cWW
250	IL_5J7L_008	5J7L	0.3728	1	Single bulged G, near cWW	AA	SSU rRNA	U	92	U	93	C	95	*	G	75	G	76	A	77	cWW			ncWWa		ncWW
251	IL_3TD0_005	3TD0	0.3246	1	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	16	A	17	G	19	*	C	30	G	31	C	32	cWW			cWW		cWW
252	IL_3TD0_002	3TD0	0.3405	1	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	39	A	40	G	42	*	C	7	G	8	C	9	cWW			cWW		cWW
253	IL_1XJR_003	1XJR	0.4095	1	Isolated non-canonical cWW pair	A	s2m RNA	G	32	G	34	G	35	*	C	16	A	17	C	18	cWW			cWW		cWW
254	IL_4ZC7_002	4ZC7	0.4676	0		B+A	RNA duplex	A	39	A	40	G	42	*	C	7	G	8	U	9	cWW			ncWW		cWW
255	IL_1MFQ_003	1MFQ	0.4101	0	Isolated non-canonical cWW pair	A	SRP RNA	A	163	G	164	G	165	*	U	132	A	133	U	134	cWW			ncWW		cWW
256	IL_4IOA_054	4IOA	0.5218	1		X	LSU rRNA	G	1573	A	1574	G	1576	*	U	1447	A	1448	C	1449	cWW			ncWw		cWW
257	IL_4V88_475	4V88	0.4665	0		A6	SSU rRNA	G	1715	C	1716	G	1717	*	U	1684	G	1685	C	1686	cWW			ncWW		cWW
258	IL_4V88_457	4V88	0.5415	2	Isolated non-canonical cWW pair	A6	SSU rRNA	G	1352	U	1353	G	1354	*	U	1369	U	1372	C	1373	cWW			cwW		cWW
259	IL_364D_004	364D	0.5271	0	Self complementary	B+C	RNA (19-mer) + RNA (31-mer)	G	79	U	80	G	81	*	U	95	G	96	C	97	cWW			ncWW		cWW
260	IL_5ZTM_001	5ZTM	0.4837	0	Isolated non-canonical cWW pair	C	non-coding mRNA sequence roX2	C	162	C	163	G	164	*	U	118	A	119	G	120	cWW			ncWW		cWW
261	IL_4IOA_037	4IOA	0.4780	1	Isolated non-canonical cWW pair (H)	X	LSU rRNA	G	1042	A	1043	G	1045	*	C	1132	G	1133	C	1134	cWW			cWW		cWW
262	IL_4Y4O_218	4Y4O	0.4403	1	Isolated non-canonical cWW pair (H)	2A	LSU rRNA	G	1031	A	1032	G	1034	*	C	1121	G	1122	C	1123	cWW			cWW		cWW
263	IL_5J7L_282	5J7L	0.4627	1	Isolated non-canonical cWW pair	DA	LSU rRNA	G	1031	A	1032	G	1034	*	C	1121	G	1122	C	1123	cWW			cWW		cWW
264	IL_4WF9_041	4WF9	0.4973	1	Isolated non-canonical cWW pair	X	LSU rRNA	G	1075	A	1076	G	1078	*	C	1165	G	1166	C	1167	cWW			ncWW		cWW
265	IL_4K31_003	4K31	0.4193	1	Isolated non-canonical cWW pair	B+C	RNA (23-mer)	A	16	A	17	G	19	*	C	7	G	8	U	9	cWW			cWW		cWW
266	IL_4K31_002	4K31	0.4202	1	Isolated non-canonical cWW pair	C+B	RNA (23-mer)	A	16	A	17	G	19	*	C	7	G	8	U	9	cWW			cWW		cWW
267	IL_5TBW_057	5TBW	0.4406	1	Isolated cWS basepair	1	LSU rRNA	A	1428	U	1430	G	1431	*	C	1376	G	1377	U	1378	cWW			cSW		cWW
268	IL_1U6B_001	1U6B	0.4651	1	Isolated non-canonical cWW pair	B	197-MER	G	19	C	20	G	22	*	C	29	A	30	C	31	cWW			ncWW		cWW
269	IL_4RUM_001	4RUM	0.3725	1	Isolated non-canonical cWW pair	A	NiCo riboswitch	G	13	A	14	C	16	*	G	88	A	89	C	90	cWW			cwW		cWW
270	IL_4IOA_029	4IOA	0.4663	0	Isolated near basepair (H)	X	LSU rRNA	A	883	C	884	A	885	*	U	917	A	918	U	919	cWW					cWW
271	IL_3NJ7_004	3NJ7	0.4950	0	Isolated near basepair	C+D	RNA (10-mer)	C	6	A	7	G	8	*	C	3	A	4	G	5	cWW					cWW
272	IL_3NJ7_003	3NJ7	0.5000	0	Isolated near basepair	D+C	RNA (10-mer)	C	6	A	7	G	8	*	C	3	A	4	G	5	cWW					cWW
273	IL_4V88_406	4V88	0.4584	0	Isolated near basepair	A6	SSU rRNA	C	411	A	412	U	413	*	A	420	A	421	G	422	cWW					cWW
274	IL_5H1K_001	5H1K	0.3704	0	Isolated non-canonical cWW pair	D+C	U4 snRNA (13-mer)	G	7	A	8	C	9	*	G	7	A	8	C	9	cWW					cWW
275	IL_4V9F_077	4V9F	0.4054	0	Isolated near basepair	0	LSU rRNA	G	2136	A	2137	C	2138	*	G	2237	A	2238	C	2239	ncWW					cWW
276	IL_2W2H_002	2W2H	0.4775	0	Isolated cWH basepair	R	RNA (21-mer)	G	17	U	18	C	19	*	G	8	A	9	U	10	ncWW			ncWW		cWW
277	IL_2H1M_002	2H1M	0.5587	0	Isolated cWH basepair	A+B	RNA (16-mer)	A	5	G	6	U	7	*	A	26	A	27	U	28	cWW			ncHW		cWW
278	IL_2H1M_003	2H1M	0.5828	0	Isolated cWH basepair	B+A	RNA (16-mer)	A	21	G	22	U	23	*	A	10	A	11	U	12	cWW			ncHW		cWW
279	IL_1M5K_004	1M5K	0.5750	0	Isolated cWH basepair	B	RNA HAIRPIN RIBOZYME	G	72	G	73	G	74	*	C	79	U	80	U	81	ncWW					cWW
280	IL_4Y4O_202	4Y4O	0.7180	1		2A	LSU rRNA	C	844	G	845	C	846	*	G	931	A	933	G	934	cWW					cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUC*GUC	48
CUG*CUG	34
CAG*CAG	11
CCG*CCG	8
CCC*GAG	6
AUG*CUU	6
GCGAG*CUC	4
CCG*CUG	4
GUG*CUC	4
AUG*CCU	4
ACU*ACU	4
AUC*GUU	4
GAUG*CGC	4
CUG*CCG	3
GGG*CAC	3
AUA*UUU	3
GCG*CAC	3
GAC*GAC	3
UUC*GGA	3
ACU*AAU	3
GUC*GAU	3
GGC*GAC	3
CUG*UUG	3
GCC*GGC	2
CAG*UAG	2
UUG*UUA	2
CUC*GGG	2
GGAG*CAC	2
GUG*UGC	2
GAG*CGU	2
GGG*CAU	2
CCU*GAG	2
ACC*GAU	2
GCU*AAC	2
GGC*GGC	2
GAAG*CGC	2
AAAG*CGU	2
AGU*AAU	2
CUGU*AUUCGG	1
CUGU*ACUCGG	1
CUGU*ACUAGG	1
CAC*GAAG	1
AUAC*GUU	1
GUGAG*CUC	1
GCAC*GAC	1
GCAG*CAC	1
GCCA*UAC	1
AUUC*GGU	1
GAAUC*GAC	1
CUAC*GAG	1
UUG*UUG	1
CCG*UCG	1
CAU*ACG	1
CAC*GGG	1
UUU*GGA	1
AGA*UAU	1
GCG*CCU	1
GUG*CUU	1
GUG*CCC	1
ACG*CUU	1
AAG*CCU	1
AGUG*CAU	1
ACG*CCU	1
GCG*CAU	1
GUU*AAU	1
UUA*UUA	1
UCA*UCA	1
UAG*CGA	1
UCG*CUA	1
CAG*CGG	1
UGA*UGG	1
UCU*AUA	1
UCC*GAG	1
CCC*GAAG	1
CUC*GUG	1
UUU*AUA	1
AACU*AUU	1
AUU*ACU	1
AUC*GUUU	1
CCG*CAG	1
ACG*CAU	1
GAA*UAC	1
GCC*GAC	1
GCC*GCC	1
GUU*GUC	1
UUC*GUA	1
AUU*AUU	1
GAU*GUC	1
AAU*GUU	1
GUC*GCU	1
GCC*GUC	1
GGU*AAC	1
GAU*AUU	1
GUC*GGC	1
AUG*UUU	1
CAG*UUG	1
UCG*CAA	1
UUU*AUG	1
CGG*CGG	1
GAG*UCC	1
UGG*UGA	1
CAG*CCG	1
UUGC*GGA	1
GAGG*CAC	1
AAG*CGU	1
AGG*UAU	1
GACG*UAC	1
GCG*UGC	1
GUG*UUAUC	1
CCG*UAG	1
AGUG*CGU	1
GCCG*CAC	1
GAGC*GAC	1
ACA*UAU	1
CAU*AAG	1
GGG*CUU	1
CGC*GGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*U	114
C*A	26
A*A	18
C*C	17
G*A	13
U*C	10
U*G	9
C*U	8
A*G	6
G*G	5
CGA*U	4
A*C	4
U*A	4
A*U	4
AA*G	4
AU*G	4
C*G	3
CA*A	2
CC*A	2
GA*A	2
AG*A	2
UG*UUCG	1
UG*CUCG	1
UG*CUAG	1
A*AA	1
UA*U	1
UGA*U	1
UU*G	1
AAU*A	1
UA*A	1
GU*A	1
C*AA	1
AC*U	1
U*UU	1
UG*G	1
AC*A	1
U*UAU	1
GU*G	1
G*U	1
G*GA	1

Release history

Release	3.17
Date	2019-04-05
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated non-canonical cWW pair (190)
(45)
Isolated cWH basepair (11)
Isolated non-canonical cWW pair (H) (8)
Isolated non-canonical cWW with bulges (7)
Isolated near basepair (4)
Intercalated tWH (3)
Self complementary (2)
Isolated non-canonical cWW with bulges (H) (2)
Isolated non-canonical cWW contact (2)
Decoding loop related (1)
Isolated near basepair (H) (1)
Single bulged G, near cWW (1)
Other IL (1)
Multiple bulged bases, near cWW (1)
Isolated cWS basepair (1)
Basepair signature: cWW-cWW-cWW
Heat map statistics: Min 0.00 | Avg 0.42 | Max 1.06

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Coloring options: Nucleotide numbers

Motif IL_89407.4 Version IL_89407.4 of this group appears in releases 3.17 to 3.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_89407.4 Version IL_89407.4 of this group appears in releases 3.17 to 3.17

Download

Csv

Json