RNA 3D Hub //

Motif IL_89407.4 Version IL_89407.4 of this group appears in releases 3.17 to 3.17

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-32-42-52-63-4
1 IL_4V9F_0624V9F0.74984Intercalated tWH0 LSU rRNAC2031U2032U2034*A1747U1748G1752cWWcWW
2 IL_4WF9_0654WF90.76544Intercalated tWHX LSU rRNAC2017U2018U2020*A1713C1714G1718cWWcWW
3 IL_5J7L_3075J7L0.75444Intercalated tWHDA LSU rRNAC1990U1991U1993*A1669C1670G1674cWWcWW
4 IL_2ET8_0032ET80.68011Decoding loop relatedB+ARNA (22-mer)C29A30C31*G15A17G18cWWcWW
5 IL_4WZM_0014WZM0.57950Isolated cWH basepairC+BRNA primerG917C918C919*G906G907C908cWWncWHcWW
6 IL_4J50_0044J500.58280Isolated cWH basepairA+BRNA (19-mer)C7||||2_555A8||||2_555G9||||2_555*C13||||2_555A14||||2_555G15||||2_555cWWcWW
7 IL_4J50_0014J500.58280Isolated cWH basepairA+BRNA (19-mer)C7A8G9*C13A14G15cWWcWW
8 IL_4J50_0074J500.58280Isolated cWH basepairA+BRNA (19-mer)C7||||3_555A8||||3_555G9||||3_555*C13||||3_555A14||||3_555G15||||3_555cWWcWW
9 IL_4J50_0064J500.58260Isolated cWH basepairB+ARNA (19-mer)C7||||2_555A8||||2_555G9||||2_555*C13||||2_555A14||||2_555G15||||2_555cWWcWW
10 IL_4J50_0094J500.58260Isolated cWH basepairB+ARNA (19-mer)C7||||3_555A8||||3_555G9||||3_555*C13||||3_555A14||||3_555G15||||3_555cWWcWW
11 IL_4J50_0034J500.58260Isolated cWH basepairB+ARNA (19-mer)C7A8G9*C13A14G15cWWcWW
12 IL_4PKD_0014PKD0.50481Isolated non-canonical cWW with bulgesVU1 snRNA stem-loops 1 and 2 (55-MER)A86U87C89*G106U107U108cWWcwWcWW
13 IL_4WF9_0954WF90.48652Isolated non-canonical cWW with bulgesX LSU rRNAG2601C2602G2605*C2537U2538C2539cWWncWWcWW
14 IL_5J7L_3405J7L0.52172Isolated non-canonical cWW with bulgesDA LSU rRNAG2574C2575G2578*C2510U2511C2512cWWncWWcWW
15 IL_4Y4O_2724Y4O0.52432Isolated non-canonical cWW with bulges (H)2A LSU rRNAG2574C2575G2578*C2510U2511C2512cWWncWWcWW
16 IL_4IOA_0914IOA0.54752Isolated non-canonical cWW with bulges (H)X LSU rRNAG2553C2554G2557*C2489U2490C2491cWWncWWcWW
17 IL_5TBW_1085TBW0.55482Isolated non-canonical cWW with bulges1 LSU rRNAG2943U2944G2947*C2879U2880C2881cWWcwWcWW
18 IL_4V9F_0974V9F0.49551Isolated non-canonical cWW with bulges0 LSU rRNAG2900C2901C2903*G2855A2856C2857cWWncWWcWW
19 IL_4IOA_1044IOA0.53111Y 5S rRNAG66C67G69*C19A20C21cWWcWWcWW
20 IL_5ML7_0105ML70.43521Isolated non-canonical cWW with bulgesB23S ribosomal RNAG2196C2197A2199*U2181A2182C2183cWWcWWcWW
21 IL_3KTW_0023KTW0.48671Isolated non-canonical cWW with bulgesCSRP RNAA177U178C180*G152G153U154cWWncSHcWWncWW
22 IL_1WNE_0011WNE0.52560C+BRNA (5-mer)G917C918C919*G906G907C908cWWcWW
23 IL_5M0H_0025M0H0.53562Multiple bulged bases, near cWWAASH1 E3 (42 nt-TL/TLR)G8U11C12*G34A35C36ncWWcWWcWW
24 IL_4V88_4554V880.43981Isolated non-canonical cWW pairA6 SSU rRNAC1339A1341C1342*G1383A1384G1385cWWncwWcWW
25 IL_4IOA_0444IOA0.51340Isolated non-canonical cWW pair (H)X LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
26 IL_4V9F_0234V9F0.37670Isolated non-canonical cWW pair0 LSU rRNAC899U900G901*C763C764G765cWWcWWcWW
27 IL_5TBW_0085TBW0.43240Isolated non-canonical cWW pair1 LSU rRNAC125U126G127*C141C142G143cWWcWWcWW
28 IL_3RW6_0043RW60.41040Isolated non-canonical cWW pairHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC33U34G35*C24C25G26cWWcWWcWW
29 IL_5UNE_0065UNE0.44650Isolated non-canonical cWW pairA+BRNA (47-MER)C27A28G29*U16A17G18cWWcwWcWW
30 IL_4KYY_0024KYY0.49630Isolated non-canonical cWW pairA+BRNA 17-merU8U9G10*U8U9G10cWWcWW
31 IL_4V88_4704V880.41040Isolated non-canonical cWW pairA6 SSU rRNAU1734U1735G1736*U1665U1666A1667cWWcWW
32 IL_4IOA_1094IOA0.44270Isolated non-canonical cWW pair (H)Y 5S rRNAC97C98G99*U82C83G84cWWcWBcWW
33 IL_3GLP_0013GLP0.38880B+ARNA (8-mer)C5||AU6G7*C2U3G4cWWcWW
34 IL_4WF9_0554WF90.35840X LSU rRNAC1622U1623C1624*G1465G1466G1467cWWcWW
35 IL_4P3U_0014P3U0.33350Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWW
36 IL_4M4O_0014M4O0.35450Isolated non-canonical cWW pairBRNA (59-MER)C6A7U8*A52C53G54cWWcWWacWW
37 IL_2R8S_0012R8S0.32480Isolated non-canonical cWW pairRP4-P6 RNA RIBOZYME DOMAINC208A210C211*G110G111G112cWWcWWcWW
38 IL_1N33_0701N330.32140Z+YA-SITE MESSENGER RNA FRAGMENTU1U2U3*G34G35A36cWWncWWacWW
39 IL_5TBW_0425TBW0.29290Isolated non-canonical cWW pair1 LSU rRNAA1009G1010A1011*U1039A1040U1041cWWcWWcWW
40 IL_4V88_4444V880.37910Isolated non-canonical cWW pairA6 SSU rRNAG1464C1465G1466*C1173C1174U1175cWWncBWcWW
41 IL_5TBW_0445TBW0.43460Isolated non-canonical cWW pair1 LSU rRNAG1087U1088G1089*C1069U1070U1071cWWncWwcWW
42 IL_5TBW_1275TBW0.31610Isolated non-canonical cWW pair1 LSU rRNAG3252G3253G3254*C3233A3234C3235cWWcWWcWW
43 IL_3DIL_0063DIL0.28640Isolated non-canonical cWW pairALysine riboswitchG115G116G117*C137A138C139cWWcWWcWW
44 IL_3D0U_0063D0U0.26630Isolated non-canonical cWW pairALysine riboswitchG112G113G114*C134A135C136cWWcWWcWW
45 IL_5MSF_0055MSF0.28421RRNA (18-mer)G3||||P_PG4||||P_PG6||||P_P*C13||||P_PA14||||P_PC15||||P_P
46 IL_5MSF_0015MSF0.28421Isolated non-canonical cWW pairRRNA (18-mer)G3||||P_1G4||||P_1G6||||P_1*C13||||P_1A14||||P_1C15||||P_1cWWcWWcWW
47 IL_4LFB_0104LFB0.32790Isolated non-canonical cWW pairA SSU rRNAG190|||KU190|||LG191*C186C187C188cWWcWWcWW
48 IL_4V9F_0174V9F0.31190Isolated non-canonical cWW pair0 LSU rRNAA597C598G599*C558U559U560cWWcWWcWW
49 IL_4WF9_0834WF90.23810Isolated non-canonical cWW pairX LSU rRNAA2260A2261G2262*C2111C2112U2113cWWncWWacWW
50 IL_5TBW_3785TBW0.32161Isolated non-canonical cWW pairAS 5S rRNAA84G85G87*C94A95U96cWWcWWcWW
51 IL_4YHW_0014YHW0.19990Isolated non-canonical cWW pairC+EU4 snRNA fragment + U6 snRNA fragmentA11C12G13*C68C69U70cWWcWW
52 IL_353D_001353D0.23270A+BRNA (12-mer)G8U9G10*U15G16C17cWWncWWacWW
53 IL_4AOB_0054AOB0.28950Isolated non-canonical cWW pairA SAM-I riboswitchG71A72G73*C78G79U80cWWncWWcWW
54 IL_4AOB_0104AOB0.28950A SAM-I riboswitchG71||||7_555A72||||7_555G73||||7_555*C78||||7_555G79||||7_555U80||||7_555cWWncWWcWW
55 IL_5TBW_1105TBW0.30950Isolated non-canonical cWW pair1 LSU rRNAG2912C2913G2914*C2889A2890U2891cWWncWWacWW
56 IL_4LFB_0594LFB0.32590Isolated non-canonical cWW pairA SSU rRNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
57 IL_5J7L_0615J7L0.31020Isolated non-canonical cWW pairAA SSU rRNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
58 IL_5E81_3765E810.234703L tRNAG27U28U29*A41A42U43ncWWncWWcWW
59 IL_3GM7_0013GM70.15820Isolated non-canonical cWW pairH+GRNA (18-mer)C16U17G18*C1U2G3cWWcWW
60 IL_2ZKO_0012ZKO0.16700Isolated non-canonical cWW pairD+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
61 IL_3GM7_0053GM70.22780Isolated non-canonical cWW pairG+HRNA (18-mer)C13U14G15*C4U5G6cWWcWW
62 IL_5MWI_0045MWI0.25590Isolated non-canonical cWW pairARNA G(CUG)8C duplexC14||||4_555U15||A||4_555G16||||4_555*C11U12||AG13cWWcWW
63 IL_5MWI_0055MWI0.25590Isolated non-canonical cWW pairARNA G(CUG)8C duplexC14U15||AG16*C11||||4_555U12||A||4_555G13||||4_555cWWcWW
64 IL_5MWI_0075MWI0.23590Isolated non-canonical cWW pairARNA G(CUG)8C duplexC20U21G22*C5||||4_555U6||||4_555G7||||4_555cWWcWW
65 IL_5MWI_0025MWI0.23590Isolated non-canonical cWW pairARNA G(CUG)8C duplexC20||||4_555U21||||4_555G22||||4_555*C5U6G7cWWcWW
66 IL_3SZX_0013SZX0.25290Isolated non-canonical cWW pairA+BRNA (19-mer)C7U8G9*C13U14G15cWWcWW
67 IL_4E48_0014E480.26960Isolated non-canonical cWW pairA+BRNA (20-mer)C2U3G4*C37U38G39cWWcWW
68 IL_4E48_0024E480.26010Isolated non-canonical cWW pairB+ARNA (20-mer)C34U35G36*C5U6G7cWWcWW
69 IL_4E48_0044E480.25840Isolated non-canonical cWW pairB+ARNA (20-mer)C28U29G30*C11U12G13cWWncwWcWW
70 IL_1UN6_0051UN60.22620Isolated non-canonical cWW pairF5S RIBOSOMAL RNAC79U80G81*C95U96G97cWWncwWcWW
71 IL_3GM7_0033GM70.20570Isolated non-canonical cWW pairH+GRNA (18-mer)C10U11G12*C7U8G9cWWncwWcWW
72 IL_3GM7_0063GM70.17040Isolated non-canonical cWW pairG+HRNA (18-mer)C16U17G18*C1U2G3cWWncwWcWW
73 IL_5VCI_0025VCI0.19900Isolated non-canonical cWW pairB+ARNA (12-mer)C7U8G9*C4U5G6cWWncwWcWW
74 IL_3GM7_0043GM70.24500Isolated non-canonical cWW pairG+HRNA (18-mer)C10U11G12*C7U8G9cWWncwWcWW
75 IL_3GM7_0023GM70.20270Isolated non-canonical cWW pairG+HRNA (18-mer)C4U5G6*C13U14G15cWWcWW
76 IL_4E59_0024E590.20300B+ARNA duplex containing CCG repeatsC2||||2_555C3||||2_555G4||||2_555*C2||||2_555C3||||2_555G4||||2_555cWWncWBcWW
77 IL_4E59_0014E590.20300Isolated non-canonical cWW pairB+ARNA duplex containing CCG repeatsC2C3G4*C2C3G4cWWncWBcWW
78 IL_4E59_0034E590.20300B+ARNA duplex containing CCG repeatsC2||||3_555C3||||3_555G4||||3_555*C2||||3_555C3||||3_555G4||||3_555cWWncWBcWW
79 IL_4E48_0054E480.22530Isolated non-canonical cWW pairA+BRNA (20-mer)C14U15G16*C25U26G27cWWcWW
80 IL_5MWI_0035MWI0.20930Isolated non-canonical cWW pairARNA G(CUG)8C duplexC17||||4_555U18||||4_555G19||||4_555*C8U9G10cWWcWW
81 IL_5MWI_0065MWI0.20930Isolated non-canonical cWW pairARNA G(CUG)8C duplexC17U18G19*C8||||4_555U9||||4_555G10||||4_555cWWcWW
82 IL_4E48_0034E480.22870Isolated non-canonical cWW pairA+BRNA (20-mer)C8U9G10*C31U32G33cWWcWW
83 IL_3GLP_0023GLP0.26500B+ARNA (8-mer)C2||AU3||AG4*C5U6G7cWWncwW
84 IL_1RPU_0011RPU0.27170Isolated non-canonical cWW pairC+DRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncWBcWW
85 IL_2Q1R_0022Q1R0.26910ARNA (12-mer)U1008A1009G1010*C1003||||2_755G1004||||2_755A1005||||2_755cWWcWWcWW
86 IL_4Y4O_1944Y4O0.288402A LSU rRNAC672C673G674*C806U807G808cWWcWWcWW
87 IL_5J7L_2595J7L0.28540Isolated non-canonical cWW pairDA LSU rRNAC672C673G674*C806U807G808cWWcWWcWW
88 IL_4IOA_0134IOA0.28870X LSU rRNAU685C686G687*C819U820A821cWWcWWcWW
89 IL_4WF9_0204WF90.26880Isolated non-canonical cWW pairX LSU rRNAC717C718G719*C851U852G853cWWcWWcWW
90 IL_5TBW_0275TBW0.31410Isolated non-canonical cWW pair1 LSU rRNAC803C804G805*C938U939G940cWWcWWcWW
91 IL_4LFB_0064LFB0.27030Isolated non-canonical cWW pairA SSU rRNAC99A101G102*C67G68G69cWWcWWcWW
92 IL_5UNE_0015UNE0.30170Isolated non-canonical cWW contactA+BRNA (47-MER)U7G8A9*U39G40G41cWWncwWcWW
93 IL_4V88_3854V880.22960Isolated non-canonical cWW pairA6 SSU rRNAU35C36U37*A471U472A473cWWcWWcWW
94 IL_5Z1I_0015Z1I0.17520Isolated non-canonical cWW pairARNA (21-mer)G19||||8_555U20||||8_555C21||||8_555*G5U6C7cWWcwWcWW
95 IL_5Z1I_0045Z1I0.17520Isolated non-canonical cWW pairARNA (21-mer)G19U20C21*G5||||8_555U6||||8_555C7||||8_555cWWcwWcWW
96 IL_5ZEI_0045ZEI0.16120A+BRNA (22-mer) + RNA (21-mer)G19U20C21*G28U29C30cWWcwWcWW
97 IL_5ZEI_0015ZEI0.13620B+ARNA (21-mer)G42U43C44*G5U6C7cWWncwWcWW
98 IL_5ZEJ_0015ZEJ0.20250B+ARNA (22-mer)G42U43C44*G5U6C7cWWncwWcWW
99 IL_1ZZ5_0021ZZ50.27910Isolated non-canonical cWW pairA+BRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
100 IL_1ZZ5_0041ZZ50.25180Isolated non-canonical cWW pairC+DRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
101 IL_4ZC7_0044ZC70.22310Isolated non-canonical cWW pairA+BRNA duplexG19U20C21*G28U29C30cWWncWwcWW
102 IL_3SZX_0023SZX0.20460Isolated non-canonical cWW pairA+BRNA (19-mer)C10U11G12*C10U11G12cWWncWwcWW
103 IL_4E48_0064E480.19070Isolated non-canonical cWW pairB+ARNA (20-mer)C22U23G24*C17U18G19cWWncwWcWW
104 IL_4KNQ_0024KNQ0.20100Isolated non-canonical cWW pairBRNA (20-mer)C207C208G209*C213||||4_555C214||||4_555G215||||4_555cWWcWW
105 IL_4KNQ_0044KNQ0.20100Isolated non-canonical cWW pairBRNA (20-mer)C207||||4_555C208||||4_555G209||||4_555*C213C214G215cWWcWW
106 IL_4JGN_0024JGN0.13960Isolated non-canonical cWW pairERNA (20-mer)C508U509G510*C514||||4_555U515||||4_555G516||||4_555cWWncwWcWW
107 IL_4JGN_0044JGN0.13960Isolated non-canonical cWW pairERNA (20-mer)C508||||4_555U509||||4_555G510||||4_555*C514U515G516cWWncwWcWW
108 IL_4JGN_0054JGN0.14440Isolated non-canonical cWW pairERNA (20-mer)C517U518G519*C505||||4_555U506||||4_555G507||||4_555cWWcwWcWW
109 IL_4JGN_0014JGN0.14440Isolated non-canonical cWW pairERNA (20-mer)C517||||4_555U518||||4_555G519||||4_555*C505U506G507cWWcwWcWW
110 IL_4KNQ_0054KNQ0.15660Isolated non-canonical cWW pairBRNA (20-mer)C216C217G218*C204||||4_555C205||||4_555G206||||4_555cWWcWwcWW
111 IL_4KNQ_0014KNQ0.15660Isolated non-canonical cWW pairBRNA (20-mer)C216||||4_555C217||||4_555G218||||4_555*C204C205G206cWWcWwcWW
112 IL_1ZH5_0011ZH50.17880Isolated non-canonical cWW pairC+DRNA (9-mer)C3U4G5*C3U4G5cWWncwWcWW
113 IL_4IOA_0304IOA0.18660Isolated non-canonical cWW pairX LSU rRNAU974C975C976*G963A964G965cWWcWWcWW
114 IL_6D06_0016D060.14780C+BRNA (23-mer)C8C9C10*G14A15G16cWWcWWcWW
115 IL_5ED2_0045ED20.10800Isolated non-canonical cWW pairF+ERNA (23-mer)C8C9C10*G14A15G16cWWcWWcWW
116 IL_6IA2_0026IA20.00000Isolated non-canonical cWW pairA+BRNA (19-mer)C7C8C9*G11||AA12G13cWWcWWcWW
117 IL_6IA2_0056IA20.06400Isolated non-canonical cWW pairA+BRNA (19-mer)C16C17C18*G2A3G4cWWcWWcWW
118 IL_4LFB_0614LFB0.13660Isolated non-canonical cWW pairA SSU rRNAC1424U1425C1426*G1474G1475G1476cWWncWWcWW
119 IL_4P3T_0054P3T0.12901Isolated non-canonical cWW pairB+ARNA (23-mer)C30C31C32*G16A18G19cWWcWWcWW
120 IL_6IA2_0046IA20.13350Isolated non-canonical cWW pairB+ARNA (19-mer)C7C8C9*G11A12G13cWWcWWcWW
121 IL_1KFO_0021KFO0.20220Isolated non-canonical cWW pairARNA (19-mer)C6C7U8*G11||||8_555A12||||8_555G13||||8_555cWWcWWcWW
122 IL_1KFO_0031KFO0.20220Isolated non-canonical cWW pairARNA (19-mer)C6||||8_555C7||||8_555U8||||8_555*G11A12G13cWWcWWcWW
123 IL_6IA2_0016IA20.12310Isolated non-canonical cWW pairB+ARNA (19-mer)C16C17C18*G2A3G4cWWcWWcWW
124 IL_4TS2_0044TS20.18830Isolated non-canonical cWW pairY+XSpinach aptamer RNA, bimolecular constructC77U78C79*G20U21G22cWWcwWcWW
125 IL_4Y1M_0054Y1M0.31610Isolated non-canonical cWW pairBE. coli yybP-ykoY riboswitchU4U5U6*A103U104A105cWWncwWcWW
126 IL_4V88_4654V880.32460Isolated non-canonical cWW pairA6 SSU rRNAG1757U1758C1759*G1642U1643C1644cWWcWW
127 IL_5M0H_0015M0H0.39351Other ILAASH1 E3 (42 nt-TL/TLR)A4A5U7*A37U38U39cWWcWW
128 IL_4V83_2354V830.31070Isolated non-canonical cWW pairCVdomain 3 of PSIC IGR IRES RNAG6173U6174G6175*C6153U6154C6155cWWncwWcWW
129 IL_4WF9_0174WF90.29160Isolated non-canonical cWW pairX LSU rRNAA618U619G620*C607C608U609cWWcWWcWW
130 IL_4Y4O_1924Y4O0.329702A LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
131 IL_5J7L_2575J7L0.34760Isolated non-canonical cWW pairDA LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
132 IL_4IOA_0104IOA0.35950Isolated non-canonical cWW pair (H)X LSU rRNAA584U585G586*C573C574U575cWWcWWcWW
133 IL_4V88_3984V880.25950Isolated non-canonical cWW pairA6 SSU rRNAA206U207U208*A257C258U259cWWcWWcWW
134 IL_5VCI_0015VCI0.25510Isolated non-canonical cWW pairB+ARNA (12-mer)C10U11G12*C1U2G3cWWcwWcWW
135 IL_4PCJ_0014PCJ0.26720Isolated non-canonical cWW pairAtrCUG-3('5)C33U34G35*C1U2G3cWWcwWcWW
136 IL_5MWI_0085MWI0.21880Isolated non-canonical cWW pairARNA G(CUG)8C duplexC23U24G25*C2||||4_555U3||||4_555G4||||4_555cWWcwWcWW
137 IL_5MWI_0015MWI0.21880Isolated non-canonical cWW pairARNA G(CUG)8C duplexC23||||4_555U24||||4_555G25||||4_555*C2U3G4cWWcwWcWW
138 IL_1MZP_0011MZP0.27670Isolated non-canonical cWW pairBfragment of 23S rRNAA4U5G6*C50U51U52cWWcwWcWW
139 IL_3RG5_0033RG50.24590BSelenocysteine transfer RNAA5|||B|1_556U6||||1_556G7||||1_556*C66||||1_556U67||||1_556U67|||A|1_556cWWcwWcWW
140 IL_3RG5_0023RG50.24590Isolated non-canonical cWW pairBSelenocysteine transfer RNAA5|||BU6G7*C66U67U67|||AcWWcwWcWW
141 IL_4ZDO_0014ZDO0.23290Isolated non-canonical cWW pair (H)ESelenocysteine transfer RNAA5||A|CU6||AG7||A*C65||AU66||AU67||A|AcWWcwWcWW
142 IL_4KZD_0034KZD0.26520Isolated non-canonical cWW pairRRNA (84-MER)G17U18G19*C66U67C68cWWcwWcWW
143 IL_3BNT_0063BNT0.26120Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG4||||4_665U5||||4_665C6||||4_665*G18U19C20cWWcwWcWW
144 IL_3BNT_0013BNT0.26120Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG4U5C6*G18||||4_665U19||||4_665C20||||4_665cWWcwWcWW
145 IL_2ET8_0042ET80.25620Isolated non-canonical cWW pairB+ARNA (22-mer)G27U28C29*G18U19C20cWWcwWcWW
146 IL_4V88_4264V880.32111Isolated non-canonical cWW pairA6 SSU rRNAA850U851C852*G819U821U822cWWcwWcWW
147 IL_5TBW_0165TBW0.30860Isolated non-canonical cWW pair1 LSU rRNAA628U629A630*U429U430U431cWWcWW
148 IL_1U9S_0071U9S0.28010Isolated non-canonical cWW pairA RNase P class AG177C178G179*C191A192C193cWWcWWcWW
149 IL_5AOX_0015AOX0.31120Isolated non-canonical cWW pairCALU JO CONSENSUS RNAG9C10G11*C18A19C20cWWcWWcWW
150 IL_5TBW_0345TBW0.21820Isolated non-canonical cWW pair1 LSU rRNAA965U966A967*U954U955U956cWWcwWcWW
151 IL_5TBW_1225TBW0.26160Isolated non-canonical cWW pair1 LSU rRNAA3168U3169A3170*U3280U3281U3282cWWcwWcWW
152 IL_4V9F_0474V9F0.25120Isolated non-canonical cWW pair0 LSU rRNAG1349U1350G1351*C1303U1304C1305cWWcwWcWW
153 IL_3U4M_0013U4M0.18750Isolated non-canonical cWW pairB LSU rRNAA2108U2109G2110*C2179U2180U2181cWWcwWcWW
154 IL_5OB3_0015OB30.25260ARNA aptamer (69-MER)G10U11G12*C58U59C60cWWcwWcWW
155 IL_1U6B_0051U6B0.21650Isolated non-canonical cWW pairB197-MERA117U118G119*C100U101U102cWWcwWcWW
156 IL_4V9F_1054V9F0.24000Isolated non-canonical cWW pair9 5S rRNAC107C108G109*C72A73G74cWWcWWcWW
157 IL_4WF9_0424WF90.23600Isolated non-canonical cWW pairX LSU rRNAG1081C1082G1083*C1160A1161C1162cWWncWWcWW
158 IL_4IOA_0254IOA0.26070X LSU rRNAA936C937G938*C864A865U866cWWcWWcWW
159 IL_4P3U_0124P3U0.19230Isolated non-canonical cWW pairC+DRNA (23-mer)G19U20C21*G28U29C30cWWncwWcWW
160 IL_4V88_4674V880.22160Isolated non-canonical cWW pairA6 SSU rRNAG1748A1749A1750*U1650A1651C1652cWWcwWcWW
161 IL_5ED1_0025ED10.20790Isolated non-canonical cWW pairC+BRNA (23-mer)G9A10C11*G13A14C15cWWcwWcWW
162 IL_2ZNI_0012ZNI0.23050Cbacterial tRNAU39U40C41*G29G30A31cWWncWWacWW
163 IL_4ZC7_0014ZC70.24460Isolated non-canonical cWW pairB+ARNA duplexG42U43C44*G5U6C7cWWncWwcWW
164 IL_3LA5_0013LA50.28750APurine riboswitchU16U17C18*G78G79A80cWWncWWcWW
165 IL_3TD0_0013TD00.24680Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWncwWcWW
166 IL_1ZX7_0061ZX70.28400Isolated non-canonical cWW pairE+FRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWcwWcWW
167 IL_5TBW_1125TBW0.24440Isolated non-canonical cWW pair1 LSU rRNAA2926C2927C2928*G2918A2919U2920cWWcWWcWW
168 IL_1YZ9_0021YZ90.21320Isolated non-canonical cWW pairF+ERNA (11-mer)A15C16U17*A4C5U6cWWncWBcWW
169 IL_1YZ9_0011YZ90.20780Isolated non-canonical cWW pairC+DRNA (11-mer)A4C5U6*A15C16U17cWWncWBcWW
170 IL_4V88_4174V880.23870Isolated non-canonical cWW pairA6 SSU rRNAG624C625U626*A973A974C975cWWcWWcWW
171 IL_5CCB_0025CCB0.28070N tRNAA31||||7_555C32||||7_555U33||||7_555*A37||||7_555A38||||7_555U39||||7_555cWWcWWcWW
172 IL_5CCB_0015CCB0.28070Isolated non-canonical cWW pairN tRNAA31C32U33*A37A38U39cWWcWWcWW
173 IL_1Z7F_0021Z7F0.25440Isolated non-canonical cWW pairARNA (16-mer)A5||||6_765C6||||6_765U7||||6_765*A10A11U12cWWcWWcWW
174 IL_5TBW_0795TBW0.27380Isolated non-canonical cWW pair1 LSU rRNAG1940C1941U1942*A2106A2107C2108cWWcWWcWW
175 IL_5Y85_0065Y850.29390Isolated non-canonical cWW pairD+CDNA/RNA (50-MER)G4C5C6*G13A14C15cWWcWWcWW
176 IL_3MEI_0023MEI0.27820Isolated non-canonical cWW pairB+ARNA (23-mer)G13C14C15*G8C9C10cWWncWBcWW
177 IL_5Y7M_0075Y7M0.29320Isolated non-canonical cWW pairDRNA (52-MER)A11C12C13*G37A38U39cWWcWWcWW
178 IL_4V88_4464V880.28190Isolated non-canonical cWW pairA6 SSU rRNAG1448U1449U1450*G1213U1214C1215cWWncwWcWW
179 IL_1T0E_0021T0E0.25700Isolated non-canonical cWW pairA+CRNA (18-mer) + RNA (17-mer)G10||AU11C12*G14U15C16cWWcwWcWW
180 IL_1ZX7_0041ZX70.27190Isolated non-canonical cWW pairC+DRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWcwWcWW
181 IL_4P43_0044P430.19290Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcwWcWW
182 IL_5B2P_0015B2P0.20330Isolated non-canonical cWW pairBGuide RNAU24U25C26*G48U49A50cWWcwWcWW
183 IL_5TBW_1155TBW0.14410Isolated non-canonical cWW pair1 LSU rRNAA3012U3013U3014*A3040U3041U3042cWWcwWcWW
184 IL_2O3V_0042O3V0.18530Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
185 IL_3BNR_0073BNR0.19820Isolated non-canonical cWW pairC+DA site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain threeG5U6C7*G17U18C19cWWcwWcWW
186 IL_5ZEG_0055ZEG0.17630CRNA (23-mer)G5U6C7*G19||||2_555U20||||2_555C21||||2_555cWWcwWcWW
187 IL_5ZEG_0085ZEG0.17630CRNA (23-mer)G5||||2_555U6||||2_555C7||||2_555*G19U20C21cWWcwWcWW
188 IL_5WTI_0025WTI0.19320Isolated non-canonical cWW pairBRNA (123-MER)G10U11C12*G18U19C20cWWcwWcWW
189 IL_2O3V_0012O3V0.19410Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
190 IL_5ZEG_0045ZEG0.18810B+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
191 IL_2O3X_0042O3X0.21480Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
192 IL_1MFQ_0021MFQ0.25990Isolated non-canonical cWW pairA SRP RNAA228U229C230*G120U121U122cWWcwWcWW
193 IL_4NGF_0024NGF0.28950Isolated non-canonical cWW pairG+HRNA (17-mer)G7U8C9*G7U8C9cWWncwWcWW
194 IL_5ZEJ_0045ZEJ0.26310A+BRNA (22-mer)G19U20C21*G28U29C30cWWncwWcWW
195 IL_4P3U_0074P3U0.22960Isolated non-canonical cWW pairD+CRNA (23-mer)G42U43C44*G5U6C7cWWncwWcWW
196 IL_4P3U_0064P3U0.21720Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
197 IL_5ZTM_0025ZTM0.19950Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2A123U124C125*G157U158U159cWWcwWcWW
198 IL_2O3Y_0012O3Y0.20160Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
199 IL_5ZEG_0015ZEG0.18160B+ARNA (23-mer)G42U43C44*G5U6C7cWWcwWcWW
200 IL_3TD0_0063TD00.19120Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
201 IL_2OE5_0012OE50.20320Isolated non-canonical cWW pairB+ARNA (17-mer)G1494U1495C1496*G1405U1406C1407cWWcwWcWW
202 IL_2OE8_0012OE80.21700Isolated non-canonical cWW pairB+ARNA (17-mer)G1494U1495C1496*G1405U1406C1407cWWcwWcWW
203 IL_4P3T_0064P3T0.22510Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcwWcWW
204 IL_2O3Y_0042O3Y0.23470Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
205 IL_3BNN_0083BNN0.24410Isolated non-canonical cWW pairC+DA site of human ribosomeG17U18C19*G3U4C5cWWcwWcWW
206 IL_3BNR_0123BNR0.25570Isolated non-canonical cWW pairC+DA site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain threeG19U20C21*G3U4C5cWWcwWcWW
207 IL_3BNN_0053BNN0.28230Isolated non-canonical cWW pairC+DA site of human ribosomeG3U4C5*G17U18C19cWWcwWcWW
208 IL_4KYY_0034KYY0.24300Isolated non-canonical cWW pairA+BRNA 17-merA11U12C13*G5U6U7cWWcwWcWW
209 IL_4KYY_0014KYY0.21940Isolated non-canonical cWW pairB+ARNA 17-merA11U12C13*G5U6U7cWWcwWcWW
210 IL_4P3T_0014P3T0.18670Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWncwWcWW
211 IL_4K31_0014K310.25160Isolated non-canonical cWW pairB+CRNA (23-mer)G5U6C7*G19U20C21cWWcwWcWW
212 IL_4K31_0044K310.25200Isolated non-canonical cWW pairC+BRNA (23-mer)G5U6C7*G19U20C21cWWcwWcWW
213 IL_4P43_0014P430.29550Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
214 IL_4LFB_0474LFB0.33050Isolated non-canonical cWW pairA SSU rRNAG1061U1062C1063*G1193U1194C1195cWWcwWcWW
215 IL_5J7L_0505J7L0.35740Isolated non-canonical cWW pairAA SSU rRNAG1061U1062C1063*G1193U1194C1195cWWcwWcWW
216 IL_4V84_0714V840.41340AVRNA (34-MER)G6183A6184U6185*G6192U6193C6194cWWncWWncWWcWW
217 IL_5E81_3715E810.33510Self complementary1K tRNAA41A42U43*G27U28U29cWWcWWncWW
218 IL_5AY2_0015AY20.32020Isolated non-canonical cWW pairA+BRNA (12-mer)A3C4U5*A8C9U10cWWcWW
219 IL_5AY2_0035AY20.31590Isolated non-canonical cWW pairA+BRNA (12-mer)A8C9U10*A3C4U5cWWcWW
220 IL_4KR9_0024KR90.36960XRNA (39-MER)G28U29C30*G6A7U8cWWcWWcWW
221 IL_4KR9_0014KR90.36810MRNA (39-MER)G28U29C30*G6A7U8cWWcWWcWW
222 IL_5UNE_0035UNE0.36500Isolated non-canonical cWW pairA+BRNA (47-MER)G12G13C14*G31G32C33cWWcWW
223 IL_5UNE_0075UNE0.39140Isolated non-canonical cWW pairB+ARNA (47-MER)G12G13C14*G31G32C33ncWWcWW
224 IL_5TBW_0215TBW0.42110Isolated non-canonical cWW pair1 LSU rRNAG668U669C670*G792C793U794cWWcWWcWW
225 IL_4IOA_0194IOA0.37060Isolated non-canonical cWW pair (H)X LSU rRNAG754C755C756*G767U768C769cWWcWWcWW
226 IL_5TBW_0685TBW0.41060Isolated non-canonical cWW pair1 LSU rRNAG1661G1662C1663*G1786A1787C1788cWWcWWcWW
227 IL_3HHN_0043HHN0.39460Isolated non-canonical cWW pairEClass I ligase ribozyme, self-ligation productG87G88U89*A102A103C104cWWcWWcWW
228 IL_4M4O_0024M4O0.35350Isolated non-canonical cWW pairBRNA (59-MER)G12G13C14*G46A47C48cWWcWWcWW
229 IL_4M6D_0114M6D0.41420Isolated non-canonical cWW pairHaptamerG12G13C14*G46A47C48cWWcWWncWW
230 IL_4IOA_0794IOA0.36990X LSU rRNAG2078A2079U2080*A2175U2176U2177cWWncWWcWW
231 IL_1NBS_0061NBS0.32600B RNase P class BG116U117C118*G125G126C127cWWncWWcWW
232 IL_4V88_4244V880.32590Isolated non-canonical cWW pairA6 SSU rRNAA799U800G801*U748U749U750cWWcwWcWW
233 IL_4Y4O_2564Y4O0.318802A LSU rRNAC2085U2086G2087*U2232U2233G2234cWWcwWcWW
234 IL_5J7L_3265J7L0.32600Isolated non-canonical cWW pairDA LSU rRNAC2232U2233G2234*U2085U2086G2087cWWcwWcWW
235 IL_4IOA_0784IOA0.33850Isolated non-canonical cWW pair (H)X LSU rRNAC2068U2069G2070*U2211U2212G2213cWWcwWcWW
236 IL_4V8Q_1884V8Q0.29310BY tmRNAC20A21G22*U56U57G58cWWncWWncWW
237 IL_5UNE_0045UNE0.32040Isolated non-canonical cWW pairB+ARNA (47-MER)C27A28G29*U16A17G18cWWcwWcWW
238 IL_3ICQ_0033ICQ0.18050ERNA (62-MER)U68U69C70*G3G4A5cWWncWWcWW
239 IL_1Y27_0011Y270.23150Isolated non-canonical cWW pairXPurine riboswitchU25C26G27*C43A44A45cWWcWWcWW
240 IL_4V88_4334V880.21570Isolated non-canonical cWW pairA6 SSU rRNAU893U894G895*U917U918A919cWWcwWncWW
241 IL_5J7L_2735J7L0.29400Isolated non-canonical cWW pairDA LSU rRNAU870U871U872*A905U906G907cWWcwWcWW
242 IL_4V88_4194V880.33310Isolated non-canonical cWW pairA6 SSU rRNAC686G687G688*C646G647G648cWWcWW
243 IL_4J50_0084J500.27320B+ARNA (19-mer)C10||||3_555A11||||3_555G12||||3_555*C10||||3_555A11||||3_555G12||||3_555cWWcWW
244 IL_4J50_0024J500.27320Isolated non-canonical cWW pairB+ARNA (19-mer)C10A11G12*C10A11G12cWWcWW
245 IL_4J50_0054J500.27320B+ARNA (19-mer)C10||||2_555A11||||2_555G12||||2_555*C10||||2_555A11||||2_555G12||||2_555cWWcWW
246 IL_4Y4O_2114Y4O0.29220Isolated non-canonical cWW pair2A LSU rRNAG952A953G954*U963C964C965cWWcWWcWW
247 IL_5UNE_0095UNE0.29530Isolated non-canonical cWW contactA+BRNA (47-MER)U39G40G41*U7G8A9cWWncWW
248 IL_3SZX_0033SZX0.26740Isolated non-canonical cWW pairB+ARNA (19-mer)C7U8G9*C13U14G15cWWncWwcWW
249 IL_4V9K_0644V9K0.29500Isolated non-canonical cWW pairAW tRNAC50A51G52*C62C63G64cWWncWWacWW
250 IL_5J7L_0085J7L0.37281Single bulged G, near cWWAA SSU rRNAU92U93C95*G75G76A77cWWncWWancWW
251 IL_3TD0_0053TD00.32461Isolated non-canonical cWW pairA+BRNA (23-mer)G16A17G19*C30G31C32cWWcWWcWW
252 IL_3TD0_0023TD00.34051Isolated non-canonical cWW pairB+ARNA (23-mer)G39A40G42*C7G8C9cWWcWWcWW
253 IL_1XJR_0031XJR0.40951Isolated non-canonical cWW pairA s2m RNAG32G34G35*C16A17C18cWWcWWcWW
254 IL_4ZC7_0024ZC70.46760B+ARNA duplexA39A40G42*C7G8U9cWWncWWcWW
255 IL_1MFQ_0031MFQ0.41010Isolated non-canonical cWW pairA SRP RNAA163G164G165*U132A133U134cWWncWWcWW
256 IL_4IOA_0544IOA0.52181Isolated non-canonical cWW pair (H)X LSU rRNAG1573A1574G1576*U1447A1448C1449cWWncwWcWW
257 IL_4V88_4754V880.46650A6 SSU rRNAG1715C1716G1717*U1684G1685C1686cWWncWWcWW
258 IL_4V88_4574V880.54152Isolated non-canonical cWW pairA6 SSU rRNAG1352U1353G1354*U1369U1372C1373cWWcwWcWW
259 IL_364D_004364D0.52710Self complementaryB+CRNA (19-mer) + RNA (31-mer)G79U80G81*U95G96C97cWWncWWcWW
260 IL_5ZTM_0015ZTM0.48370Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2C162C163G164*U118A119G120cWWncWWcWW
261 IL_4IOA_0374IOA0.47801Isolated non-canonical cWW pair (H)X LSU rRNAG1042A1043G1045*C1132G1133C1134cWWcWWcWW
262 IL_4Y4O_2184Y4O0.44031Isolated non-canonical cWW pair (H)2A LSU rRNAG1031A1032G1034*C1121G1122C1123cWWcWWcWW
263 IL_5J7L_2825J7L0.46271Isolated non-canonical cWW pairDA LSU rRNAG1031A1032G1034*C1121G1122C1123cWWcWWcWW
264 IL_4WF9_0414WF90.49731Isolated non-canonical cWW pairX LSU rRNAG1075A1076G1078*C1165G1166C1167cWWncWWcWW
265 IL_4K31_0034K310.41931Isolated non-canonical cWW pairB+CRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
266 IL_4K31_0024K310.42021Isolated non-canonical cWW pairC+BRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
267 IL_5TBW_0575TBW0.44061Isolated cWS basepair1 LSU rRNAA1428U1430G1431*C1376G1377U1378cWWcSWcWW
268 IL_1U6B_0011U6B0.46511Isolated non-canonical cWW pairB197-MERG19C20G22*C29A30C31cWWncWWcWW
269 IL_4RUM_0014RUM0.37251Isolated non-canonical cWW pairANiCo riboswitchG13A14C16*G88A89C90cWWcwWcWW
270 IL_4IOA_0294IOA0.46630Isolated non-canonical cWW pair (H)X LSU rRNAA883C884A885*U917A918U919cWWcWW
271 IL_3NJ7_0043NJ70.49500Isolated non-canonical cWW pairC+DRNA (10-mer)C6A7G8*C3A4G5cWWcWW
272 IL_3NJ7_0033NJ70.50000Isolated non-canonical cWW pairD+CRNA (10-mer)C6A7G8*C3A4G5cWWcWW
273 IL_4V88_4064V880.45840Isolated non-canonical cWW pairA6 SSU rRNAC411A412U413*A420A421G422cWWcWW
274 IL_5H1K_0015H1K0.37040Isolated non-canonical cWW pairD+CU4 snRNA (13-mer)G7A8C9*G7A8C9cWWcWW
275 IL_4V9F_0774V9F0.40540Isolated non-canonical cWW pair0 LSU rRNAG2136A2137C2138*G2237A2238C2239ncWWcWW
276 IL_2W2H_0022W2H0.47750Isolated cWH basepairRRNA (21-mer)G17U18C19*G8A9U10ncWWncWWcWW
277 IL_2H1M_0022H1M0.55870Isolated cWH basepairA+BRNA (16-mer)A5G6U7*A26A27U28cWWncHWcWW
278 IL_2H1M_0032H1M0.58280Isolated cWH basepairB+ARNA (16-mer)A21G22U23*A10A11U12cWWncHWcWW
279 IL_1M5K_0041M5K0.57500Isolated cWH basepairBHairpin ribozymeG72G73G74*C79U80U81ncWWcWW
280 IL_4Y4O_2024Y4O0.718012A LSU rRNAC844G845C846*G931A933G934cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC48
CUG*CUG34
CAG*CAG11
CCG*CCG8
CCC*GAG6
AUG*CUU6
GCGAG*CUC4
CCG*CUG4
GUG*CUC4
AUG*CCU4
ACU*ACU4
AUC*GUU4
GAUG*CGC4
CUG*CCG3
GGG*CAC3
AUA*UUU3
GCG*CAC3
GAC*GAC3
UUC*GGA3
ACU*AAU3
GUC*GAU3
GGC*GAC3
CUG*UUG3
GCC*GGC2
CAG*UAG2
UUG*UUA2
CUC*GGG2
GGAG*CAC2
GUG*UGC2
GAG*CGU2
GGG*CAU2
CCU*GAG2
ACC*GAU2
GCU*AAC2
GGC*GGC2
GAAG*CGC2
AAAG*CGU2
AGU*AAU2
CUGU*AUUCGG1
CUGU*ACUCGG1
CUGU*ACUAGG1
CAC*GAAG1
AUAC*GUU1
GUGAG*CUC1
GCAC*GAC1
GCAG*CAC1
GCCA*UAC1
AUUC*GGU1
GAAUC*GAC1
CUAC*GAG1
UUG*UUG1
CCG*UCG1
CAU*ACG1
CAC*GGG1
UUU*GGA1
AGA*UAU1
GCG*CCU1
GUG*CUU1
GUG*CCC1
ACG*CUU1
AAG*CCU1
AGUG*CAU1
ACG*CCU1
GCG*CAU1
GUU*AAU1
UUA*UUA1
UCA*UCA1
UAG*CGA1
UCG*CUA1
CAG*CGG1
UGA*UGG1
UCU*AUA1
UCC*GAG1
CCC*GAAG1
CUC*GUG1
UUU*AUA1
AACU*AUU1
AUU*ACU1
AUC*GUUU1
CCG*CAG1
ACG*CAU1
GAA*UAC1
GCC*GAC1
GCC*GCC1
GUU*GUC1
UUC*GUA1
AUU*AUU1
GAU*GUC1
AAU*GUU1
GUC*GCU1
GCC*GUC1
GGU*AAC1
GAU*AUU1
GUC*GGC1
AUG*UUU1
CAG*UUG1
UCG*CAA1
UUU*AUG1
CGG*CGG1
GAG*UCC1
UGG*UGA1
CAG*CCG1
UUGC*GGA1
GAGG*CAC1
AAG*CGU1
AGG*UAU1
GACG*UAC1
GCG*UGC1
GUG*UUAUC1
CCG*UAG1
AGUG*CGU1
GCCG*CAC1
GAGC*GAC1
ACA*UAU1
CAU*AAG1
GGG*CUU1
CGC*GGAG1
Non-Watson-Crick part of the motif
SequenceCounts
U*U114
C*A26
A*A18
C*C17
G*A13
U*C10
U*G9
C*U8
A*G6
G*G5
CGA*U4
A*C4
U*A4
A*U4
AA*G4
AU*G4
C*G3
CA*A2
CC*A2
GA*A2
AG*A2
UG*UUCG1
UG*CUCG1
UG*CUAG1
A*AA1
UA*U1
UGA*U1
UU*G1
AAU*A1
UA*A1
GU*A1
C*AA1
AC*U1
U*UU1
UG*G1
AC*A1
U*UAU1
GU*G1
G*U1
G*GA1

Release history

Release3.17
Date2019-04-05
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (194)
  • (44)
  • Isolated cWH basepair (11)
  • Isolated non-canonical cWW pair (H) (10)
  • Isolated non-canonical cWW with bulges (7)
  • Intercalated tWH (3)
  • Self complementary (2)
  • Isolated non-canonical cWW with bulges (H) (2)
  • Isolated non-canonical cWW contact (2)
  • Decoding loop related (1)
  • Single bulged G, near cWW (1)
  • Other IL (1)
  • Multiple bulged bases, near cWW (1)
  • Isolated cWS basepair (1)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.42 | Max 1.06
    Help

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