#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8 91-92-6
1 HL_6ORD_0376ORD0.46010T-loop with 2 stacked bulged basesQY tRNAG53U54U55C56G57A58U59C60C61cWW
2 HL_4V9K_0354V9K0.38230T-loop with 2 stacked bulged basesAW tRNAG53U54U55C56G57A58A59U60C61cWWntWH
3 HL_2ZNI_0032ZNI0.35080T-loop with 2 stacked bulged basesCbacterial tRNAG53U54G55A56A57A58C59U60C61cWWtWH
4 HL_6UFG_0086UFG0.18470T-loop with 2 stacked bulged basesB tRNAG54U55U56C57A58A59G60U61C62cWWtWH
5 HL_5J7L_1655J7L0.27520T-loop with 2 stacked bulged basesDA LSU rRNAG1281U1282G1283A1284A1285A1286A1287G1288C1289cWWtWH
6 HL_3ICQ_0053ICQ0.22290T-loop with 2 stacked bulged basesERNA (62-MER)G53U54U55C56G57A58U59C60C61cWWtWH
7 HL_4QEI_0034QEI0.24940T-loop with 2 stacked bulged basesC tRNAG53U54U55C56G57A58U59U60C61cWW
8 HL_5E6M_0035E6M0.22130T-loop with 2 stacked bulged basesC tRNAG53U54U55C56G57A58U59U60C61cWW
9 HL_4V8Q_1104V8Q0.17350T-loop with 2 stacked bulged basesBY SsrAG66U67U68C69G70A71C72U73C74cWWntWH
10 HL_4V90_0344V900.13810T-loop with 2 stacked bulged basesAV tRNAG53U54U55C56G57A58U59U60C61cWWtWH
11 HL_5X6B_0035X6B0.11340T-loop with 2 stacked bulged basesP tRNAG52U53U54C55A56A57A58U59C60cWWtWH
12 HL_2ZZM_0042ZZM0.13050T-loop with 2 stacked bulged basesBRNA (84-MER)G53U54U55C56A57A58A59U60C61cWWtWH
13 HL_3AL0_0033AL00.10660T-loop with 2 stacked bulged basesEtRNAGlnG53U54U55C56G57A58G59U60C61cWWtWH
14 HL_6PMO_0056PMO0.14020T-loop with 2 stacked bulged basesB tRNAG53U54U55C56G57A58A59U60C61cWWtWH
15 HL_5AXM_0035AXM0.12850T-loop with 2 stacked bulged basesP tRNAG53U54U55C56G57A58U59C60C61cWWtWH
16 HL_4YCO_0034YCO0.11180T-loop with 2 stacked bulged basesD tRNAG53U54U55C56G57A58U59U60C61cWWtWH
17 HL_7MRL_0037MRL0.09230T-loop with 2 stacked bulged basesA tRNAG56U57U58C59A60A61G62U63C64cWWtWH
18 HL_6UGG_0066UGG0.08040T-loop with 2 stacked bulged basesB tRNAG53U54U55C56G57A58G59U60C61cWWtWH
19 HL_1J1U_0031J1U0.10640T-loop with 2 stacked bulged basesBtRNA(Tyr)G554U555U556C557A558A559A560U561C562cWWtWH
20 HL_4JXZ_0034JXZ0.10480T-loop with 2 stacked bulged basesBRNA (71-MER)G953U954U955C956G957A958A959U960C961cWWtWH
21 HL_5HR6_0035HR60.11970T-loop with 2 stacked bulged basesC tRNAG52U53U54C55G56A57A58U59C60cWWtWH
22 HL_4YYE_0034YYE0.09290T-loop with 2 stacked bulged basesC tRNAG53U54U55C56A57A58A59U60C61cWWtWH
23 HL_5HR7_0065HR70.09410T-loop with 2 stacked bulged basesD tRNAG52U53U54C55G56A57A58U59C60cWWtWH
24 HL_8VU0_0038VU00.09410T-loop with 2 stacked bulged basesC tRNAG53U54U55C56A57A58G59U60C61cWWtWH
25 HL_1QTQ_0031QTQ0.10690T-loop with 2 stacked bulged basesB tRNAG953U954U955C956G957A958A959U960C961cWWtWH
26 HL_2BTE_0042BTE0.10630T-loop with 2 stacked bulged basesB tRNAG53U54U55C56A57A58G59U60C61cWWtWH
27 HL_5AH5_0085AH50.08340T-loop with 2 stacked bulged basesD tRNAG53U54U55C56A57A58G59U60C61cWWtWH
28 HL_3WQY_0033WQY0.07940T-loop with 2 stacked bulged basesC tRNAG1653U1654U1655C1656A1657A1658A1659U1660C1661cWWtWH
29 HL_2ZZN_0062ZZN0.09390T-loop with 2 stacked bulged basesDRNA (71-MER)G53U54U55C56A57A58A59U60C61cWWtWH
30 HL_7LYF_0037LYF0.11530T-loop with 2 stacked bulged basesA tRNAG116U117U118C119A120A121G122U123C124cWWtWH
31 HL_8UO6_0088UO60.09320T-loop with 2 stacked bulged basesBHIV-1 Rev Response Element Stem-Loop II with tRNA scaffoldG111U112U113C114A115A116G117U118C119cWWtWH
32 HL_8UO6_0048UO60.09390T-loop with 2 stacked bulged basesAHIV-1 Rev Response Element Stem-Loop II with tRNA scaffoldG111U112U113C114A115A116G117U118C119cWWtWH
33 HL_7KJT_0037KJT0.07940T-loop with 2 stacked bulged basesA tRNAG53U54U55C56A57A58A59U60C61cWWtWH
34 HL_2ZUE_0032ZUE0.07350T-loop with 2 stacked bulged basesBtRNA-ArgG953U954U955C956A957A958A959U960C961cWWtWH
35 HL_4RDX_0034RDX0.00000T-loop with 2 stacked bulged basesC tRNAG53U54U55C56A57A58G59U60C61cWWtWH
36 HL_6UFM_0036UFM0.07100T-loop with 2 stacked bulged basesA tRNAG54U55U56C57G58A59G60U61C62cWWtWH
37 HL_7E8O_0037E8O0.09580T-loop with 2 stacked bulged basesX tRNAG52U53U54C55G56A57A58U59C60cWWtWH
38 HL_8G9Z_0048G9Z0.11260T-loop with 2 stacked bulged basesESelenocysteine transfer RNAG53||AU54||AU55||AC56||AA57||AA58||AU59||AU60||AC61||AcWWtWH
39 HL_6JXM_0036JXM0.10920T-loop with 2 stacked bulged basesB tRNAG74U75U76C77G78A79G80U81C82cWWtWH
40 HL_3RG5_0083RG50.09780T-loop with 2 stacked bulged basesBSelenocysteine transfer RNAG53U54U55C56A57A58U59U60C61cWWtWH
41 HL_4LCK_0034LCK0.12540T-loop with 2 stacked bulged basesB tRNAG52U53U54C55G56A57A58U59C60cWWtWH
42 HL_3ZGZ_0033ZGZ0.11830T-loop with 2 stacked bulged basesB tRNAG53U54U55C56A57A58G59U60C61cWWtWH
43 HL_4WJ4_0034WJ40.11740T-loop with 2 stacked bulged basesB tRNAG53U54U55C56G57A58G59U60C61cWWtWH
44 HL_4YCP_0034YCP0.11400T-loop with 2 stacked bulged basesB tRNAG53U54U55C56G57A58G59U60C61cWWtWH
45 HL_5WT1_0035WT10.12710T-loop with 2 stacked bulged basesC tRNAG53U54U55C56A57A58A59U60C61cWWtWH
46 HL_4P5J_0034P5J0.14000T-loop with 2 stacked bulged basesAtRNA-like 3' UTR elementG46U47G48C49A50A51C52U53C54cWWtWH
47 HL_1FFY_0031FFY0.15660T-loop with 2 stacked bulged basesTISOLEUCYL-TRNAG53U54U55C56A57A58G59U60C61cWWtWH
48 HL_1QU2_0031QU20.15660T-loop with 2 stacked bulged basesT tRNAG53U54U55C56A57A58G59U60C61cWWtWH
49 HL_1U0B_0031U0B0.17820T-loop with 2 stacked bulged basesA tRNAG53U54U55C56G57A58C59U60C61cWWtWH
50 HL_7K98_0037K980.15630T-loop with 2 stacked bulged basesC tRNAG54U55U56C57G58A59U60C61C62cWWtWH
51 HL_6CU1_0016CU10.18770T-loop with 2 stacked bulged basesAY RNA-likeG24U25U26C27G28A29G30A31C32cWWtWH
52 HL_7EQJ_0067EQJ0.15080T-loop with 2 stacked bulged basesB tRNAG53U54U55C56G57A58U59C60C61cWWtWH
53 HL_4GCW_0024GCW0.13760T-loop with 2 stacked bulged basesBTRNA(THR)G53U54U55C56G57A58G59C60C61cWWtWH
54 HL_7UZ0_0037UZ00.18610T-loop with 2 stacked bulged basesA tRNAG68U69U70C71G72A73G74U75C76cWWtWH
55 HL_4TUE_0354TUE0.19980T-loop with 2 stacked bulged basesQV tRNAG53U54U55C56A57A58A59U60C61ncWWtWH
56 HL_3WFS_0033WFS0.19820T-loop with 2 stacked bulged basesA tRNAG53U54U55C56G57A58U59U60C61cWWtWH
57 HL_3TUP_0033TUP0.20350T-loop with 2 stacked bulged basesT tRNAG53U54U55C56G57A58U59U60C61cWWntWH
58 HL_1N78_0031N780.18050T-loop with 2 stacked bulged basesCtRNA(Glu)G553U554U555C556G557A558U559U560C561cWWtWH
59 HL_3EPH_0033EPH0.19710T-loop with 2 stacked bulged basesEtRNAG53U54U55C56G57A58U59C60C61cWWtWH
60 HL_6JQ6_0036JQ60.20180T-loop with 2 stacked bulged basesURNA (81-MER)G6U7G8A9G10A11A12U13C14cWWtWH
61 HL_6JQ5_0016JQ50.20010T-loop with 2 stacked bulged basesARNA (82-MER)G6U7G8A9G10A11A12U13C14cWWtWH
62 HL_6JQ5_0036JQ50.20260T-loop with 2 stacked bulged basesBRNA (82-MER)G6U7G8A9G10A11A12U13C14cWWtWH
63 HL_3IGI_0013IGI0.18040T-loop with 2 stacked bulged basesAGroup IIC intronG30U31G32A33G34A35G36U37C38cWWtWH
64 HL_4X4V_0014X4V0.13720T-loop with 2 stacked bulged basesBHuman MenBeta minihelix ending in CCACCG12U13U14C15G16A17G18U19C20cWWtWH
65 HL_2DU3_0032DU30.12760T-loop with 2 stacked bulged basesDtRNAG952U953U954C955G956A957A958U959C960cWWtWH
66 HL_4MGN_0044MGN0.16630T-loop with 2 stacked bulged basesBtRNA-glycineG52U53U54C55G56A57G58U59C60cWWtWH
67 HL_5WWT_0025WWT0.17230T-loop with 2 stacked bulged basesC tRNAG53U54U55C56A57A58A59U60C61cWWtWH
68 HL_3ADD_0043ADD0.15520T-loop with 2 stacked bulged basesCSelenocysteine transfer RNAG53U54U55C56A57A58U59U60C61cWWtWH
69 HL_3W3S_0043W3S0.12540T-loop with 2 stacked bulged basesBSelenocysteine transfer RNAG53U54U55C56G57A58U59U60C61cWWtWH
70 HL_3FOZ_0063FOZ0.16010T-loop with 2 stacked bulged basesDtRNA(Phe)G53U54U55C56G57A58U59U60C61cWWtWH
71 HL_3AM1_0043AM10.22670T-loop with 2 stacked bulged basesBASL-truncated tRNAG59U60U61C62G63A64U65U66C67cWWtWH
72 HL_2DER_0062DER0.17220T-loop with 2 stacked bulged basesDtRNAG53U54U55C56G57A58A59U60C61cWWtWH
73 HL_1WZ2_0081WZ20.15030T-loop with 2 stacked bulged basesDtRNAG965U966U967C968G969A970A971U972C973cWWtWH
74 HL_3AMU_0033AMU0.17210T-loop with 2 stacked bulged basesB tRNAG53U54U55C56G57A58A59U60C61cWWtWH
75 HL_4WZD_2104WZD0.18330T-loop with 2 stacked bulged bases2K tRNAG62||||P_15MU63||||P_1PSU64||||P_1C65||||P_1G66||||P_1A67||||P_1A68||||P_1U69||||P_1C70||||P_1cWWntWH
76 HL_5B63_0045B630.16600T-loop with 2 stacked bulged basesD tRNAG954U955U956C957G958A959A960U961C962cWWtWH
77 HL_3AKZ_0123AKZ0.18590T-loop with 2 stacked bulged basesEtRNAGlnG53U54U55C56G57A58G59U60C61cWWtWH
78 HL_8SP9_0048SP90.18120T-loop with 2 stacked bulged basesCtRNA scaffold,CVB3 Cloverleaf RNAG130U131U132C133A134A135G136U137C138cWWntWH
79 HL_4V87_1094V870.22310T-loop with 2 stacked bulged basesBBTRNA-LEUG64U65U66C67A68A69G70U71C72cWWntWH
80 HL_4WSM_2114WSM0.34890T-loop with 2 stacked bulged bases1K tRNAG645MU65PSU66C67A68A69G70U71C72cWW
81 HL_1H3E_0041H3E0.18880T-loop with 2 stacked bulged basesB tRNAG535MU54PSU55C56G57MAD58A59U60C61cWW
82 HL_3KFU_0063KFU0.23100T-loop with 2 stacked bulged basesL tRNAG535MU54PSU55C56G57A58G59U60C61cWWtWH
83 HL_2DLC_0032DLC0.2660-3T-loop with 2 stacked bulged basesYT-RNA (76-MER)G5535MU554PSU555C556G5571MA558C559U560C561cWWtWH
84 HL_1B23_0031B230.25830T-loop with 2 stacked bulged basesR tRNAG535MU54PSU55C56G57A58C59U60C61cWWtWH
85 HL_1FIR_0031FIR0.26390T-loop with 2 stacked bulged basesA tRNAG532MU54PSU55C56A571MA58G59U60C61cWWtWH
86 HL_1IL2_0031IL20.24550T-loop with 2 stacked bulged basesC tRNAG9535MU954PSU955C956A957A958U959U960C961cWWtWH
87 HL_1QF6_0031QF60.25070T-loop with 2 stacked bulged basesB tRNAG535MU54PSU55C56G57A58C59U60C61cWWtWH
88 HL_1F7U_0031F7U0.22120T-loop with 2 stacked bulged basesBTRNA(ARG)G9535MU954PSU955C956A9571MA958G959U960C961cWWtWH
89 HL_1SER_0021SER0.24560T-loop with 2 stacked bulged basesT tRNAG535MU54PSU55C56G57A58A59U60C61cWWtWH
90 HL_8JOZ_0048JOZ0.23840T-loop with 2 stacked bulged basesB tRNAG535MU54PSU55C56G57A58A59U60C61cWWtWH
91 HL_5E81_2135E810.25010T-loop with 2 stacked bulged bases2K tRNAG545MU55PSU56C57A58A59A60U61C62ncWWtWH
92 HL_6CFJ_1086CFJ0.25370T-loop with 2 stacked bulged bases1x tRNAG535MU54PSU55C56A57A58A59U60C61cWWtWH
93 HL_5L4O_0035L4O0.23220T-loop with 2 stacked bulged basesA tRNAG535MU54PSU55C56A57A58A59U60C61cWWtWH
94 HL_4JYZ_0034JYZ0.22690T-loop with 2 stacked bulged basesB tRNAG9535MU954PSU955C956G957A958A959U960C961cWWtWH
95 HL_1VTQ_0031VTQ0.22610T-loop with 2 stacked bulged basesAT-RNA-ASPG525MU53PSU54C55A56A57U58U59C60cWWtWH
96 HL_2FMT_0062FMT0.30690T-loop with 2 stacked bulged basesDFORMYL-METHIONYL-TRNAFMET2G535MU54PSU55C56A57A58A59U60C61cWWtWH
97 HL_5E81_2075E810.24020T-loop with 2 stacked bulged bases1K tRNAG535MU54PSU55C56G57A58A59U60C61cWWtWH
98 HL_6GSL_2106GSL0.20730T-loop with 2 stacked bulged bases1L tRNAG545MU55PSU56C57G58A59A60U61C62cWWtWH
99 HL_5IBB_2115IBB0.29270T-loop with 2 stacked bulged bases1L tRNAG535MU54PSU55C56G57A58U59C60C61cWWtWH
100 HL_5IB8_2095IB80.26950T-loop with 2 stacked bulged bases1L tRNAG535MU54PSU55C56G57A58A59U60C61cWWntWH
101 HL_3VJR_0013VJR0.32110T-loop with 2 bulged bases not stackedBtRNA CCA-acceptorG13U14U15C16G17A18U19C20C21cWWtWH
102 HL_6NWY_0356NWY0.30710T-loop with 2 stacked bulged basesQV tRNAG53U54U55C56G57A58A59U60C61cWWntWH
103 HL_2CZJ_0082CZJ0.34770T-loop with 2 stacked bulged basesHtmRNA (63-MER)G535MU54PSU55C56G57A58C59U60C61ncWW
104 HL_1P6V_0041P6V0.46210T-loop with 2 bulged bases not stackedB45-MERG45U46U47C48G49A50U51U52C53cWWntWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUUCGAAUC14
GUUCAAGUC14
GUUCGAUUC11
GUUCAAAUC11
GUUCGAGUC10
GUUCGAUCC7
GCGAAUC7
GUUCAAUUC3
GUGAGAAUC3
GCGACUC3
GCAAAUC3
GUUCGACUC2
GCAGUC2
GCAAUUC2
GUGAAACUC1
GUGAAAAGC1
GUGCAACUC1
GUUCGAGAC1
GUUCGAGCC1
GUGAGAGUC1
GCAAGUC1
GCGAUC1
GCGAGUC1
GCGCUC1
G(5MU)(PSU)CAAAUC1
GCGAUCC1
Non-Watson-Crick part of the motif
SequenceCounts
UUCGAAU14
UUCAAGU14
UUCGAUU11
UUCAAAU11
UUCGAGU10
UUCGAUC7
(5MU)(PSU)CGAAU7
(5MU)(PSU)CAAAU4
UUCAAUU3
UGAGAAU3
(5MU)(PSU)CGACU3
UUCGACU2
(5MU)(PSU)CAAUU2
UGAAACU1
UGAAAAG1
UGCAACU1
UUCGAGA1
UUCGAGC1
UGAGAGU1
(5MU)(PSU)CAAGU1
(5MU)(PSU)CG(MAD)AU1
(5MU)(PSU)CGAGU1
CGCU1
(2MU)(PSU)CA(1MA)GU1
(5MU)(PSU)CA(1MA)GU1
(5MU)(PSU)CGAUC1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • T-loop with 2 stacked bulged bases (102)
  • T-loop with 2 bulged bases not stacked (2)
  • Basepair signature
    cWW-tWH-F-F-F-F-F
    Heat map statistics
    Min 0.00 | Avg 0.24 | Max 0.82
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