Motif IL_60247.2 Version IL_60247.2 of this group appears in releases 3.3 to 3.7

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-7	1-8	2-7	3-6	4-5
1	IL_3BNT_002	3BNT	0.7672	1	Tandem non-canonical cWW pairs	A	A site of human mitochondrial ribosome	C	6	A	7	C	8	C	9	*	G	14\|\|\|\|4_665	C	15\|\|\|\|4_665	A	17\|\|\|\|4_665	G	18\|\|\|\|4_665		cWW	cwW	ncBW	cWW
2	IL_3BNT_005	3BNT	0.7672	1	Tandem non-canonical cWW pairs	A	A site of human mitochondrial ribosome	C	6\|\|\|\|4_665	A	7\|\|\|\|4_665	C	8\|\|\|\|4_665	C	9\|\|\|\|4_665	*	G	14	C	15	A	17	G	18		cWW	cwW	ncBW	cWW
3	IL_3BNR_008	3BNR	0.7558	1	Minor groove platform related	C+D	A site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain three	C	7	A	8	C	9	C	10	*	G	13	C	14	A	16	G	17		cWW	cwW	ncwW	cWW
4	IL_2IL9_001	2IL9	0.5378	0	Tandem non-canonical cWW pairs	A	Ribosomal Binding Domain of the IRES RNA	G	6079	U	6080	C	6081	U	6082	*	G	6110	G	6111	A	6112	C	6113		cWW			cWW
5	IL_5J7L_296	5J7L	0.5434	1	Tandem non-canonical cWW pairs	DA	LSU rRNA	G	1432	A	1433	A	1434	G	1435	*	C	1557	C	1558	G	1560	C	1561		cWW	cWW	tWW	cWW
6	IL_4WF9_109	4WF9	0.4276	0	Tandem non-canonical cWW pairs	Y	5S rRNA	C	2	U	3	G	4	G	5	*	C	110	A	111	G	112	G	113		cWW	ncWWa	ncWH	cWW
7	IL_4WF9_110	4WF9	0.4754	0	Tandem non-canonical cWW pairs	Y	5S rRNA	G	5	U	6	G	7	A	8	*	U	107	G	108	C	109	C	110		cWW	ncWW		cWW
8	IL_4V88_461	4V88	0.5072	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	C	1509	U	1510	U	1511	G	1512	*	C	1495	U	1496	U	1497	G	1498		cWW		cWw	cWW
9	IL_5EW4_001	5EW4	0.4754	0	Tandem non-canonical cWW pairs	A+B	RNA (22-mer)	C	8	C	9	C	10	G	11	*	C	14	C	15	C	16	G	17		cWW	cWB	cwW	cWW
10	IL_5C5W_001	5C5W	0.3776	0	Tandem non-canonical cWW pairs	A	RNA (19-mer)	C	2	C	3	U	4	G	5	*	C	15\|\|\|\|5_556	U	16\|\|\|\|5_556	A	17\|\|\|\|5_556	G	18\|\|\|\|5_556		cWW	cWW	cWw	cWW
11	IL_5C5W_003	5C5W	0.3776	0	Tandem non-canonical cWW pairs	A	RNA (19-mer)	C	2\|\|\|\|5_556	C	3\|\|\|\|5_556	U	4\|\|\|\|5_556	G	5\|\|\|\|5_556	*	C	15	U	16	A	17	G	18		cWW	cWW	cWw	cWW
12	IL_3R2D_002	3R2D	0.3782	0	Tandem non-canonical cWW pairs	R+S	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9		cWW	cwW	cWw	cWW
13	IL_5TBW_128	5TBW	0.4056	0	Tandem non-canonical cWW pairs	1	LSU rRNA	C	3235	U	3236	U	3237	G	3238	*	C	3249	U	3250	U	3251	G	3252		cWW	cwW	cWw	cWW
14	IL_5TBW_129	5TBW	0.3709	0	Tandem non-canonical cWW pairs	1	LSU rRNA	C	3311	U	3312	U	3313	A	3314	*	U	3300	U	3301	U	3302	G	3303		cWW	cwW	cWw	cWW
15	IL_280D_001	280D	0.4593	0	Tandem non-canonical cWW pairs	B+A	RNA (12-mer)	C	17	U	18	U	19	G	20	*	C	5	U	6	U	7	G	8		cWW	cwW	cWw	cWW
16	IL_4V5O_162	4V5O	0.3783	0	Tandem non-canonical cWW pairs	BA	SSU rRNA	C	1687	C	1688	U	1689	A	1690	*	U	1635	C	1636	U	1637	G	1638		cWW	cWW	cWW	cWW
17	IL_4EYA_003	4EYA	0.4656	0	Tandem non-canonical cWW pairs	e+f	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9		cWW	cwW	cWw	cWW
18	IL_4V88_473	4V88	0.4706	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	C	1675	U	1676	C	1677	A	1678	*	U	1723	U	1724	U	1725	G	1726		cWW	cwW		cWW
19	IL_402D_001	402D	0.4105	0	Tandem non-canonical cWW pairs	B+A	RNA (8-mer)	C	111	C	112	A	113	G	114	*	C	103	C	104	A	105	G	106		cWW	cWW	cWW	cWW
20	IL_5TBW_041	5TBW	0.4268	0	Tandem non-canonical cWW pairs	1	LSU rRNA	A	1006	U	1007	U	1008	A	1009	*	U	1041	U	1042	C	1043	U	1044		cWW		cWw	cWW
21	IL_4V8P_205	4V8P	0.5160	0	Tandem non-canonical cWW pairs	D1	LSU rRNA	A	1032	U	1033	U	1034	A	1035	*	U	1067	U	1068	C	1069	U	1070		cWW	ncSW	cWw	cWW
22	IL_4V5O_090	4V5O	0.3948	0	Tandem non-canonical cWW pairs	BA	SSU rRNA	G	105	U	106	U	107	A	108	*	U	293	U	294	U	295	C	296		cWW	cwW	cWw	cWW
23	IL_4V88_391	4V88	0.3803	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	109	U	110	U	111	A	112	*	U	302	U	303	U	304	C	305		cWW	cwW	cWw	cWW
24	IL_4V88_429	4V88	0.3667	1	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	957	U	958	U	960	U	961	*	G	867	G	868	A	869	C	870		cWW		ncWW	cWW
25	IL_4UYK_003	4UYK	0.4586	0	Tandem non-canonical cWW pairs	R	SRP RNA	G	117	U	118	U	119	C	120	*	G	81	U	82	U	83	C	84		cWW	cwW	cWw	cWW
26	IL_4IOA_041	4IOA	0.4283	0	Tandem non-canonical cWW pairs	X	LSU rRNA	G	1196	U	1197	C	1198	U	1199	*	A	1175	U	1176	U	1177	C	1178		cWW	cwW	cWW	cWW
27	IL_3TZR_003	3TZR	0.4312	0	Tandem non-canonical cWW pairs	B+A	RNA (16-mer)	G	102	U	103	C	104	G	105	*	C	62	U	63	U	64	C	65		cWW	cwW	cWW	cWW
28	IL_2PN3_004	2PN3	0.4641	0	Tandem non-canonical cWW pairs	A+B	RNA (24-mer) + RNA (20-mer)	C	62	U	63	U	64	C	65	*	G	102	U	103	C	104	G	105		cWW	cWW	cWw	cWW
29	IL_4V5O_085	4V5O	0.4233	0	Tandem non-canonical cWW pairs	BA	SSU rRNA	A	593	U	594	A	595	U	596	*	A	23	C	24	A	25	U	26	ncwW	cWW	cWW	cWW	cWW
30	IL_4WF9_085	4WF9	0.4482	1	Tandem non-canonical cWW pairs	X	LSU rRNA	G	2245	U	2246	G	2247	G	2248	*	C	2229	C	2231	A	2232	C	2233		cWW	ncWW	ncWW	ncWW
31	IL_422D_001	422D	0.6007	0	Tandem non-canonical cWW pairs	B+A	RNA (12-mer)	U	19	U	20	C	21	G	22	*	U	7	U	8	C	9	G	10		cWW	cWW	cWW	cWW
32	IL_4GMA_008	4GMA	0.4080	0	Tandem non-canonical cWW pairs	Z	Adenosylcobalamin riboswitch	U	186	U	187	C	188	G	189	*	U	205	G	206	A	207	A	208		cWW			ncWW
33	IL_5EW4_002	5EW4	0.3088	0	Tandem non-canonical cWW pairs	A+B	RNA (22-mer)	C	14	C	15	C	16	G	17	*	C	8	C	9	C	10	G	11		cWW	ncWB	ncWB	cWW
34	IL_4K27_001	4K27	0.3091	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	49	C	50	U	51	G	52	*	C	4	C	5	U	6	G	7		cWW	cWW	cWW	cWW
35	IL_3CUL_002	3CUL	0.3573	0	Tandem non-canonical cWW pairs	C	RNA (92-MER)	G	56	U	57	G	58	G	59	*	C	87	A	88	G	89	C	90		cWW	ncWWa	ncWW	cWW
36	IL_4K27_002	4K27	0.4144	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	45	C	46	U	47	G	48	*	C	8	C	9	U	10	G	11		cWW	cWW	cWW	cWW
37	IL_4K27_003	4K27	0.4051	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	12	C	13	U	14	G	15	*	C	41	C	42	U	43	G	44		cWW	cWW	cWW	cWW
38	IL_4V8P_285	4V8P	0.3276	0	Tandem non-canonical cWW pairs	D1	LSU rRNA	C	3271	U	3272	U	3273	A	3274	*	U	3260	U	3261	U	3262	G	3263		cWW	cWw	cWw	cWW
39	IL_361D_001	361D	0.3563	0	Tandem non-canonical cWW pairs	B	RNA (20-mer)	U	80	G	81	G	82	G	83	*	C	93	C	94	U	95	G	96		cWW	ncWWa		cWW
40	IL_4V8P_261	4V8P	0.1882	0	Tandem non-canonical cWW pairs	D1	LSU rRNA	U	2707	U	2708	G	2709	A	2710	*	U	2724	A	2725	C	2726	A	2727		cWW	cWW	cWW	cWW
41	IL_5J7L_283	5J7L	0.0000	0	Tandem non-canonical cWW pairs	DA	LSU rRNA	G	1038	A	1039	A	1040	G	1041	*	C	1114	G	1115	G	1116	C	1117		cWW	cWW	cWW	cWW
42	IL_4EYA_008	4EYA	0.2513	0	Tandem non-canonical cWW pairs	l+k	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9		cWW	ncwW	ncwW	cWW
43	IL_4V88_431	4V88	0.3042	1	Tandem non-canonical cWW pairs	A6	SSU rRNA	C	950	A	951	A	952	G	953	*	C	874	G	875	G	877	G	878		cWW	cWW	cWW	cWW
44	IL_4V5O_123	4V5O	0.2992	1	Tandem non-canonical cWW pairs	BA	SSU rRNA	C	928	A	929	A	930	A	931	*	U	852	G	853	G	855	G	856		cWW	ncWW	cWW	cWW
45	IL_5TBW_100	5TBW	0.2618	0	Tandem non-canonical cWW pairs	1	LSU rRNA	U	2735	A	2736	C	2737	A	2738	*	U	2718	U	2719	G	2720	A	2721		cWW	cWW		cWW
46	IL_4V5O_129	4V5O	0.3204	0	Tandem non-canonical cWW pairs	BA	SSU rRNA	G	1046	C	1047	A	1048	C	1049	*	G	1019	G	1020	A	1021	U	1022		ncWW	ncBW	cWW	cWW
47	IL_4V88_438	4V88	0.3048	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	1074	C	1075	A	1076	C	1077	*	G	1041	G	1042	A	1043	U	1044		cWW	ncBW	cWW	cWW
48	IL_5LQO_002	5LQO	0.2744	0	Tandem non-canonical cWW pairs	A+B	RNA (10-mer)	G	4	G	5	A	6	C	7	*	G	4	G	5	A	6	C	7		cWW	cWW	cWW	cWW
49	IL_4P95_002	4P95	0.3375	0	Tandem non-canonical cWW pairs	A	RNA (192-MER)	G	223	G	224	G	225	U	226	*	A	15	G	16	A	17	C	18		cWW	cWW		cWW
50	IL_4P8Z_002	4P8Z	0.3773	0	Tandem non-canonical cWW pairs	A	Lariat capping ribozyme	G	5	G	6	G	7	U	8	*	A	181	G	182	A	183	C	184		cWW	cWW		cWW
51	IL_4V88_432	4V88	0.4017	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	885	U	886	A	887	U	888	*	A	924	G	925	A	926	C	927		cWW		cWW	cWW
52	IL_4V5O_122	4V5O	0.3702	0	Tandem non-canonical cWW pairs	BA	SSU rRNA	A	849	G	850	U	851	U	852	*	A	931	G	932	A	933	U	934		cWW	cWW	ncWW	cWW
53	IL_4V88_430	4V88	0.3591	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	871	G	872	U	873	C	874	*	G	953	G	954	A	955	C	956		cWW	cWW		cWW
54	IL_1JID_002	1JID	0.3372	0	Tandem non-canonical cWW pairs	B	HELIX 6 OF HUMAN SRP RNA	G	138	A	139	C	140	C	141	*	G	156	A	157	C	158	C	159		cWW	cWW	cWW	cWW
55	IL_1D4R_003	1D4R	0.3551	0	Tandem non-canonical cWW pairs	A+B	29-MER OF MODIFIED SRP RNA HELIX 6	G	22	A	23	C	24	C	25	*	G	4	A	5	C	6	C	7		cWW	cWW	cWW	cWW
56	IL_1MFQ_004	1MFQ	0.2880	0	Tandem non-canonical cWW pairs	A	SRP RNA	G	138	A	139	C	140	C	141	*	G	156	A	157	C	158	C	159		cWW	ncWW	ncWW	cWW
57	IL_4V5O_165	4V5O	0.3165	0	Tandem non-canonical cWW pairs	BA	SSU rRNA	A	1676	A	1677	U	1678	A	1679	*	U	1646	U	1647	C	1648	U	1649		cWW	cWWa	ncwW	cWW
58	IL_1D4R_001	1D4R	0.3380	0	Tandem non-canonical cWW pairs	B+A	29-MER OF MODIFIED SRP RNA HELIX 6	G	22	A	23	C	24	C	25	*	G	4	A	5	C	6	C	7		cWW	cWWa	cWW	cWW
59	IL_3WBM_003	3WBM	0.2889	0	Tandem non-canonical cWW pairs	Y+X	RNA (25-MER)	A	10	C	11	C	12	C	13	*	G	14	A	15	C	16	U	17		cWW	ncWB	cWW	cWW
60	IL_3WBM_002	3WBM	0.2994	0	Tandem non-canonical cWW pairs	X+Y	RNA (25-MER)	A	10	C	11	C	12	C	13	*	G	14	A	15	C	16	U	17		cWW	ncWB	ncWW	cWW
61	IL_5OB3_002	5OB3	0.4342	3		A	RNA aptamer (69-MER)	G	12	A	13	G	14	C	18	*	G	55	G	56	G	57	C	58		cWW	cWW	ncWB	cWW
62	IL_4KZD_004	4KZD	0.4366	3	Tandem non-canonical cWW pairs	R	RNA (84-MER)	G	19	A	20	A	21	C	25	*	G	63	A	64	G	65	C	66		cWW	cWW		cWW
63	IL_4TS2_005	4TS2	0.4419	3	Tandem non-canonical cWW pairs	X+Y	Spinach aptamer RNA, bimolecular construct	G	22	A	23	A	24	C	28	*	G	74	A	75	G	76	C	77		cWW	cWW	ncwW	cWW
64	IL_1G1X_006	1G1X	0.4245	1	Tandem non-canonical cWW pairs	I+J	16S RIBOSOMAL RNA	G	662	A	663	G	664	G	666	*	U	740	G	741	G	742	U	743		cWW	cWW	cwW	cWW
65	IL_1G1X_003	1G1X	0.4012	1	Tandem non-canonical cWW pairs	D+E	16S RIBOSOMAL RNA	G	662	A	663	G	664	G	666	*	U	740	G	741	G	742	U	743		cWW	cWW	cwW	cWW
66	IL_4LFB_029	4LFB	0.4228	1	Tandem non-canonical cWW pairs	A	SSU rRNA	G	662	A	663	G	664	G	666	*	U	740	G	741	G	742	U	743		cWW	cWW	cwW	cWW
67	IL_5J7L_033	5J7L	0.3917	1	Tandem non-canonical cWW pairs	AA	SSU rRNA	U	662	A	663	G	664	G	666	*	U	740	G	741	G	742	A	743		cWW	cWW	cwW	cWW
68	IL_4V88_466	4V88	0.5337	1	Non canonical cWW and near pair	A6	SSU rRNA	A	1753	A	1754	A	1756\|\|A	G	1757	*	C	1644	G	1645	C	1646	U	1647		cWW	ntWW	ncWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUG*CUUG	6
GACC*GACC	4
CACC*GCAAG	3
CCUG*CCUG	3
GAGAG*UGGU	3
CCCG*CCCG	2
CCUG*CUAG	2
CUUA*UUUG	2
AUUA*UUCU	2
GUUA*UUUC	2
GCAC*GGAU	2
GGGU*AGAC	2
ACCC*GACU	2
GAAGGAC*GAGC	2
GUCU*GGAC	1
GAAG*CCUGC	1
CUGG*CAGG	1
GUGA*UGCC	1
CCUA*UCUG	1
CUCA*UUUG	1
CCAG*CCAG	1
GUUUU*GGAC	1
GUUC*GUUC	1
GUCU*AUUC	1
GUCG*CUUC	1
CUUC*GUCG	1
AUAU*ACAU	1
GUGG*CGCAC	1
UUCG*UUCG	1
UUCG*UGAA	1
GUGG*CAGC	1
UGGG*CCUG	1
UUGA*UACA	1
GAAG*CGGC	1
CAAG*CGGGG	1
CAAA*UGGGG	1
UACA*UUGA	1
GGAC*GGAC	1
GUAU*AGAC	1
AGUU*AGAU	1
GGUC*GGAC	1
AAUA*UUCU	1
GAGGGUC*GGGC	1
UAGAG*UGGA	1
AAAAG*CGCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UU*UU	11
CU*CU	4
AC*AC	4
AGA*GG	4
AC*CAA	3
UC*UU	3
UU*UC	3
UC*GA	2
UG*AG	2
CC*CC	2
CU*UA	2
AA*GGG	2
CA*GA	2
GG*GA	2
GU*GA	2
CC*AC	2
AAGGA*AG	2
AA*CUG	1
UG*GC	1
CA*CA	1
UUU*GA	1
UA*CA	1
UG*GCA	1
UC*UC	1
GG*CU	1
UG*AC	1
AA*GG	1
AC*UG	1
GA*GA	1
UA*GA	1
AU*UC	1
AGGGU*GG	1
AAA*GC	1

Release history

Release	3.3	3.4	3.5	3.6	3.7
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Tandem non-canonical cWW pairs (65)
Minor groove platform related (1)
Non canonical cWW and near pair (1)
(1)
Basepair signature: cWW-cWW-cWW-cWW
Heat map statistics: Min 0.06 | Avg 0.50 | Max 1.04

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The Resolver thinks MMCif

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view

reading 527 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

3 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

527 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 34 ms

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3 models

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0 atoms selected

170 atoms selected

44 atoms selected

80 atoms selected

46 atoms selected

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7 atoms selected

272 atoms selected

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56 atoms selected

22 atoms selected

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22 atoms selected

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Coloring options: Nucleotide numbers

Motif IL_60247.2 Version IL_60247.2 of this group appears in releases 3.3 to 3.7 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_60247.2 Version IL_60247.2 of this group appears in releases 3.3 to 3.7

Download

Csv

Json