IL_85877.6

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-7	3-6	4-5
1	IL_3BNT_005	3BNT	0.7672	1	Tandem non-canonical cWW pairs	A	A site of human mitochondrial ribosome	C	6\|\|\|\|4_665	A	7\|\|\|\|4_665	C	8\|\|\|\|4_665	C	9\|\|\|\|4_665	*	G	14	C	15	A	17	G	18	cWW	cwW	ncBW	cWW
2	IL_3BNT_002	3BNT	0.7672	1	Tandem non-canonical cWW pairs	A	A site of human mitochondrial ribosome	C	6	A	7	C	8	C	9	*	G	14\|\|\|\|4_665	C	15\|\|\|\|4_665	A	17\|\|\|\|4_665	G	18\|\|\|\|4_665	cWW	cwW	ncBW	cWW
3	IL_2IL9_001	2IL9	0.5378	0	Tandem non-canonical cWW pairs	A	Ribosomal Binding Domain of the IRES RNA	G	6079	U	6080	C	6081	U	6082	*	G	6110	G	6111	A	6112	C	6113	cWW			cWW
4	IL_5J7L_296	5J7L	0.5434	1	Tandem non-canonical cWW pairs	DA	LSU rRNA	G	1432	A	1433	A	1434	G	1435	*	C	1557	C	1558	G	1560	C	1561	cWW	cWW	tWW	cWW
5	IL_4WF9_109	4WF9	0.4276	0	Tandem non-canonical cWW pairs	Y	5S rRNA	C	2	U	3	G	4	G	5	*	C	110	A	111	G	112	G	113	cWW	ncWWa	ncWH	cWW
6	IL_4WF9_110	4WF9	0.4754	0	Tandem non-canonical cWW pairs	Y	5S rRNA	G	5	U	6	G	7	A	8	*	U	107	G	108	C	109	C	110	cWW	ncWW		cWW
7	IL_4WF9_085	4WF9	0.4482	1	Tandem non-canonical cWW pairs	X	LSU rRNA	G	2245	U	2246	G	2247	G	2248	*	C	2229	C	2231	A	2232	C	2233	cWW	ncWW	ncWW	ncWW
8	IL_3TZR_003	3TZR	0.4312	0	Tandem non-canonical cWW pairs	B+A	RNA (16-mer)	G	102	U	103	C	104	G	105	*	C	62	U	63	U	64	C	65	cWW	cwW	cWW	cWW
9	IL_4IOA_041	4IOA	0.4283	0	Tandem non-canonical cWW pairs	X	LSU rRNA	G	1196	U	1197	C	1198	U	1199	*	A	1175	U	1176	U	1177	C	1178	cWW	cwW	cWW	cWW
10	IL_2PN3_004	2PN3	0.4641	0	Tandem non-canonical cWW pairs	A+B	RNA (24-mer) + RNA (20-mer)	C	62	U	63	U	64	C	65	*	G	102	U	103	C	104	G	105	cWW	cWW	cWw	cWW
11	IL_4UYK_003	4UYK	0.4586	0	Tandem non-canonical cWW pairs	R	SRP RNA	G	117	U	118	U	119	C	120	*	G	81	U	82	U	83	C	84	cWW	cwW	cWw	cWW
12	IL_6JDV_001	6JDV	0.5334	0	Tandem non-canonical cWW pairs	B	CRISPR RNA direct repeat element	G	66	U	67	U	68	G	69	*	C	32	U	33	C	34	C	35	cWW	ncSW	cWw	cWW
13	IL_4V88_429	4V88	0.3667	1	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	957	U	958	U	960	U	961	*	G	867	G	868	A	869	C	870	cWW		ncWW	cWW
14	IL_4V88_391	4V88	0.3803	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	109	U	110	U	111	A	112	*	U	302	U	303	U	304	C	305	cWW	cwW	cWw	cWW
15	IL_4V88_473	4V88	0.4706	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	C	1675	U	1676	C	1677	A	1678	*	U	1723	U	1724	U	1725	G	1726	cWW	cwW		cWW
16	IL_402D_001	402D	0.4105	0	Tandem non-canonical cWW pairs	B+A	RNA (8-mer)	C	111	C	112	A	113	G	114	*	C	103	C	104	A	105	G	106	cWW	cWW	cWW	cWW
17	IL_5TBW_041	5TBW	0.4268	0	Tandem non-canonical cWW pairs	1	LSU rRNA	A	1006	U	1007	U	1008	A	1009	*	U	1041	U	1042	C	1043	U	1044	cWW		cWw	cWW
18	IL_5C5W_003	5C5W	0.3776	0	Tandem non-canonical cWW pairs	A	RNA (19-mer)	C	2\|\|\|\|5_556	C	3\|\|\|\|5_556	U	4\|\|\|\|5_556	G	5\|\|\|\|5_556	*	C	15	U	16	A	17	G	18	cWW	cWW	cWw	cWW
19	IL_5C5W_001	5C5W	0.3776	0	Tandem non-canonical cWW pairs	A	RNA (19-mer)	C	2	C	3	U	4	G	5	*	C	15\|\|\|\|5_556	U	16\|\|\|\|5_556	A	17\|\|\|\|5_556	G	18\|\|\|\|5_556	cWW	cWW	cWw	cWW
20	IL_3R2D_002	3R2D	0.3782	0	Tandem non-canonical cWW pairs	R+S	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9	cWW	cwW	cWw	cWW
21	IL_5TBW_128	5TBW	0.4056	0	Tandem non-canonical cWW pairs	1	LSU rRNA	C	3235	U	3236	U	3237	G	3238	*	C	3249	U	3250	U	3251	G	3252	cWW	cwW	cWw	cWW
22	IL_5TBW_129	5TBW	0.3709	0	Tandem non-canonical cWW pairs	1	LSU rRNA	C	3311	U	3312	U	3313	A	3314	*	U	3300	U	3301	U	3302	G	3303	cWW	cwW	cWw	cWW
23	IL_6MWN_005	6MWN	0.4071	0	Tandem non-canonical cWW pairs	B	IRES	A	643	U	644	U	645	G	646	*	C	661	U	662	U	663	U	664	cWW	cwW	cWw	cWW
24	IL_280D_001	280D	0.4593	0	Tandem non-canonical cWW pairs	B+A	RNA (12-mer)	C	17	U	18	U	19	G	20	*	C	5	U	6	U	7	G	8	cWW	cwW	cWw	cWW
25	IL_4EYA_003	4EYA	0.4656	0	Tandem non-canonical cWW pairs	e+f	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9	cWW	cwW	cWw	cWW
26	IL_5EW4_001	5EW4	0.4754	0	Tandem non-canonical cWW pairs	A+B	RNA (22-mer)	C	8	C	9	C	10	G	11	*	C	14	C	15	C	16	G	17	cWW	cWB	cwW	cWW
27	IL_4V88_461	4V88	0.5072	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	C	1509	U	1510	U	1511	G	1512	*	C	1495	U	1496	U	1497	G	1498	cWW		cWw	cWW
28	IL_6JDV_002	6JDV	0.3191	0	Tandem non-canonical cWW pairs	B	CRISPR RNA direct repeat element	A	63	C	64	C	65	G	66	*	C	35	C	36	U	37	U	38	cWW	cWW		cWW
29	IL_5J7L_283	5J7L	0.0000	0	Tandem non-canonical cWW pairs	DA	LSU rRNA	G	1038	A	1039	A	1040	G	1041	*	C	1114	G	1115	G	1116	C	1117	cWW	cWW	cWW	cWW
30	IL_5TBW_100	5TBW	0.2618	0	Tandem non-canonical cWW pairs	1	LSU rRNA	U	2735	A	2736	C	2737	A	2738	*	U	2718	U	2719	G	2720	A	2721	cWW	cWW		cWW
31	IL_4V88_431	4V88	0.3042	1	Tandem non-canonical cWW pairs	A6	SSU rRNA	C	950	A	951	A	952	G	953	*	C	874	G	875	G	877	G	878	cWW	cWW	cWW	cWW
32	IL_4EYA_008	4EYA	0.2513	0	Tandem non-canonical cWW pairs	l+k	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9	cWW	ncwW	ncwW	cWW
33	IL_4EYA_010	4EYA	0.3111	0	Tandem non-canonical cWW pairs	m+n	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9	cWW	ncwW	ncwW	ncWW
34	IL_361D_001	361D	0.3563	0	Tandem non-canonical cWW pairs	B	RNA (20-mer)	U	80	G	81	G	82	G	83	*	C	93	C	94	U	95	G	96	cWW	ncWWa		cWW
35	IL_6CZR_168	6CZR	0.2643	0	Tandem non-canonical cWW pairs	1a	SSU rRNA	U	1463	G	1464	G	1465	G	1466	*	C	1395	A	1396	U	1397	G	1398	cWW	ncWWa	cWW	cWW
36	IL_4K27_001	4K27	0.3091	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	49	C	50	U	51	G	52	*	C	4	C	5	U	6	G	7	cWW	cWW	cWW	cWW
37	IL_5EW4_002	5EW4	0.3088	0	Tandem non-canonical cWW pairs	A+B	RNA (22-mer)	C	14	C	15	C	16	G	17	*	C	8	C	9	C	10	G	11	cWW	ncWB	ncWB	cWW
38	IL_4K27_002	4K27	0.4144	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	45	C	46	U	47	G	48	*	C	8	C	9	U	10	G	11	cWW	cWW	cWW	cWW
39	IL_4K27_003	4K27	0.4051	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	12	C	13	U	14	G	15	*	C	41	C	42	U	43	G	44	cWW	cWW	cWW	cWW
40	IL_3CUL_002	3CUL	0.3573	0	Tandem non-canonical cWW pairs	C	RNA (92-MER)	G	56	U	57	G	58	G	59	*	C	87	A	88	G	89	C	90	cWW	ncWWa	ncWW	cWW
41	IL_1L9A_005	1L9A	0.4134	0	Tandem non-canonical cWW pairs	B	signal recognition particle RNA S domain	G	138	A	139	C	140	C	141	*	G	156	A	157	C	158	C	159	cWW	ncWW	ncWWa	cWW
42	IL_5LQO_002	5LQO	0.2744	0	Tandem non-canonical cWW pairs	A+B	RNA (10-mer)	G	4	G	5	A	6	C	7	*	G	4	G	5	A	6	C	7	cWW	cWW	cWW	cWW
43	IL_4P95_002	4P95	0.3375	0	Tandem non-canonical cWW pairs	A	RNA (192-MER)	G	223	G	224	G	225	U	226	*	A	15	G	16	A	17	C	18	cWW	cWW		cWW
44	IL_4V88_432	4V88	0.4017	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	885	U	886	A	887	U	888	*	A	924	G	925	A	926	C	927	cWW		cWW	cWW
45	IL_4V88_430	4V88	0.3591	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	871	G	872	U	873	C	874	*	G	953	G	954	A	955	C	956	cWW	cWW		cWW
46	IL_6DTD_001	6DTD	0.4530	0	Tandem non-canonical cWW pairs	C	RNA (37-MER)	G	5	C	6	A	7	U	8	*	A	31	A	32	A	33	C	34	cWW	ncBW	cwW	cWW
47	IL_4V88_438	4V88	0.3048	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	1074	C	1075	A	1076	C	1077	*	G	1041	G	1042	A	1043	U	1044	cWW	ncBW	cWW	cWW
48	IL_5M73_006	5M73	0.2761	0	Tandem non-canonical cWW pairs (H)	A	SRP RNA	G	156	A	157	C	158	C	159	*	G	138	A	139	C	140	C	141	cWW	ncWW	ncWW	cWW
49	IL_1JID_002	1JID	0.3372	0	Tandem non-canonical cWW pairs	B	HELIX 6 OF HUMAN SRP RNA	G	138	A	139	C	140	C	141	*	G	156	A	157	C	158	C	159	cWW	cWW	cWW	cWW
50	IL_1D4R_003	1D4R	0.3551	0	Tandem non-canonical cWW pairs	A+B	29-MER OF MODIFIED SRP RNA HELIX 6	G	22	A	23	C	24	C	25	*	G	4	A	5	C	6	C	7	cWW	cWW	cWW	cWW
51	IL_1MFQ_004	1MFQ	0.2880	0	Tandem non-canonical cWW pairs	A	SRP RNA	G	138	A	139	C	140	C	141	*	G	156	A	157	C	158	C	159	cWW	ncWW	ncWW	cWW
52	IL_1L9A_002	1L9A	0.3082	0	Tandem non-canonical cWW pairs	B	signal recognition particle RNA S domain	G	227	A	228	U	229	C	230	*	G	120	U	121	U	122	C	123	cWW	ncWW	ncwW	cWW
53	IL_1D4R_001	1D4R	0.3380	0	Tandem non-canonical cWW pairs	B+A	29-MER OF MODIFIED SRP RNA HELIX 6	G	22	A	23	C	24	C	25	*	G	4	A	5	C	6	C	7	cWW	cWWa	cWW	cWW
54	IL_3WBM_003	3WBM	0.2889	0	Tandem non-canonical cWW pairs	Y+X	RNA (25-MER)	A	10	C	11	C	12	C	13	*	G	14	A	15	C	16	U	17	cWW	ncWB	cWW	cWW
55	IL_3WBM_002	3WBM	0.2994	0	Tandem non-canonical cWW pairs	X+Y	RNA (25-MER)	A	10	C	11	C	12	C	13	*	G	14	A	15	C	16	U	17	cWW	ncWB	ncWW	cWW
56	IL_5OB3_002	5OB3	0.4342	3		A	RNA aptamer (69-MER)	G	12	A	13	G	14	C	18	*	G	55	G	56	G	57	C	58	cWW	cWW	ncWB	cWW
57	IL_4TS2_005	4TS2	0.4419	3	Tandem non-canonical cWW pairs	X+Y	Spinach aptamer RNA, bimolecular construct	G	22	A	23	A	24	C	28	*	G	74	A	75	G	76	C	77	cWW	cWW	ncwW	cWW
58	IL_4KZD_004	4KZD	0.4366	3	Tandem non-canonical cWW pairs	R	RNA (84-MER)	G	19	A	20	A	21	C	25	*	G	63	A	64	G	65	C	66	cWW	cWW		cWW
59	IL_6CZR_141	6CZR	0.4481	1	Tandem non-canonical cWW pairs	1a	SSU rRNA	G	646	A	647	G	648	G	650	*	U	724	G	725	G	726	U	727	cWW	ncWW	cwW	cWW
60	IL_1G1X_006	1G1X	0.4245	1	Tandem non-canonical cWW pairs	I+J	16S RIBOSOMAL RNA	G	662	A	663	G	664	G	666	*	U	740	G	741	G	742	U	743	cWW	cWW	cwW	cWW
61	IL_1G1X_003	1G1X	0.4012	1	Tandem non-canonical cWW pairs	D+E	16S RIBOSOMAL RNA	G	662	A	663	G	664	G	666	*	U	740	G	741	G	742	U	743	cWW	cWW	cwW	cWW
62	IL_4LFB_029	4LFB	0.4228	1	Tandem non-canonical cWW pairs	A	SSU rRNA	G	662	A	663	G	664	G	666	*	U	740	G	741	G	742	U	743	cWW	cWW	cwW	cWW
63	IL_5J7L_033	5J7L	0.3917	1	Tandem non-canonical cWW pairs	AA	SSU rRNA	U	662	A	663	G	664	G	666	*	U	740	G	741	G	742	A	743	cWW	cWW	cwW	cWW
64	IL_4V88_466	4V88	0.5337	1	Non canonical cWW and near pair	A6	SSU rRNA	A	1753	A	1754	A	1756\|\|A	G	1757	*	C	1644	G	1645	C	1646	U	1647	cWW	ntWW	ncWW	cWW
65	IL_6CF2_001	6CF2	0.6765	1	Non canonical cWW and near pair	G	RNA (35-MER)	G	27	A	28	A	30	C	31	*	G	5	G	6	A	7	C	8	cWW		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUG*CUUG	7
GACC*GACC	6
GAGAG*UGGU	4
CCUG*CCUG	3
CACC*GCAAG	2
CCUG*CUAG	2
CCCG*CCCG	2
ACCC*GACU	2
GAAGGAC*GAGC	2
GUCU*GGAC	1
GAAG*CCUGC	1
CUGG*CAGG	1
GUGA*UGCC	1
GUGG*CGCAC	1
GUCG*CUUC	1
GUCU*AUUC	1
CUUC*GUCG	1
GUUC*GUUC	1
GUUG*CUCC	1
GUUUU*GGAC	1
GUUA*UUUC	1
CUCA*UUUG	1
CCAG*CCAG	1
AUUA*UUCU	1
CUUA*UUUG	1
AUUG*CUUU	1
ACCG*CCUU	1
GAAG*CGGC	1
UACA*UUGA	1
CAAG*CGGGG	1
UGGG*CCUG	1
UGGG*CAUG	1
GUGG*CAGC	1
GGAC*GGAC	1
GGGU*AGAC	1
GUAU*AGAC	1
GGUC*GGAC	1
GCAU*AAAC	1
GCAC*GGAU	1
GAUC*GUUC	1
GAGGGUC*GGGC	1
UAGAG*UGGA	1
AAAAG*CGCU	1
GAAAC*GGAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UU*UU	11
AC*AC	6
AGA*GG	5
UC*UU	3
UU*UC	3
CU*CU	3
AC*CAA	2
UG*AG	2
CU*UA	2
CC*CC	2
CC*AC	2
AAGGA*AG	2
UC*GA	1
AA*CUG	1
UG*GC	1
UG*GCA	1
UUU*GA	1
CA*CA	1
CC*CU	1
AA*GG	1
AC*UG	1
AA*GGG	1
GG*CU	1
GG*AU	1
GA*GA	1
GG*GA	1
UA*GA	1
GU*GA	1
CA*AA	1
CA*GA	1
AU*UU	1
AGGGU*GG	1
AAA*GC	1
AAA*GA	1

Release history

Release	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44
Date	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_85877.6 Version IL_85877.6 of this group appears in releases 3.25 to 3.44 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_85877.6 Version IL_85877.6 of this group appears in releases 3.25 to 3.44

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Csv

Json