RNA 3D Hub //

Motif IL_85877.7 Version IL_85877.7 of this group appears in releases 3.45 to 3.46

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_3BNT_0053BNT0.76721Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeC6||||4_665A7||||4_665C8||||4_665C9||||4_665*G14C15A17G18cWWcwWncBWcWW
2 IL_3BNT_0023BNT0.76721Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeC6A7C8C9*G14||||4_665C15||||4_665A17||||4_665G18||||4_665cWWcwWncBWcWW
3 IL_2IL9_0012IL90.53780Tandem non-canonical cWW pairsARibosomal Binding Domain of the IRES RNAG6079U6080C6081U6082*G6110G6111A6112C6113cWWcWW
4 IL_5J7L_2965J7L0.54341Tandem non-canonical cWW pairsDA LSU rRNAG1432A1433A1434G1435*C1557C1558G1560C1561cWWcWWtWWcWW
5 IL_4WF9_1094WF90.42760Tandem non-canonical cWW pairsY 5S rRNAC2U3G4G5*C110A111G112G113cWWncWWancWHcWW
6 IL_4WF9_1104WF90.47540Tandem non-canonical cWW pairsY 5S rRNAG5U6G7A8*U107G108C109C110cWWncWWcWW
7 IL_4V88_4614V880.50720Tandem non-canonical cWW pairsA6 SSU rRNAC1509U1510U1511G1512*C1495U1496U1497G1498cWWcWwcWW
8 IL_5EW4_0015EW40.47540Tandem non-canonical cWW pairsA+BRNA (22-mer)C8C9C10G11*C14C15C16G17cWWcWBcwWcWW
9 IL_4EYA_0034EYA0.46560Tandem non-canonical cWW pairse+fRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
10 IL_280D_001280D0.45930Tandem non-canonical cWW pairsB+ARNA (12-mer)C17U18U19G20*C5U6U7G8cWWcwWcWwcWW
11 IL_6MWN_0056MWN0.40710Tandem non-canonical cWW pairsB IRESA643U644U645G646*C661U662U663U664cWWcwWcWwcWW
12 IL_5TBW_1295TBW0.37090Tandem non-canonical cWW pairs1 LSU rRNAC3311U3312U3313A3314*U3300U3301U3302G3303cWWcwWcWwcWW
13 IL_5TBW_1285TBW0.40560Tandem non-canonical cWW pairs1 LSU rRNAC3235U3236U3237G3238*C3249U3250U3251G3252cWWcwWcWwcWW
14 IL_3R2D_0023R2D0.37820Tandem non-canonical cWW pairsR+SRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
15 IL_5C5W_0015C5W0.37760Tandem non-canonical cWW pairsARNA (19-mer)C2C3U4G5*C15||||5_556U16||||5_556A17||||5_556G18||||5_556cWWcWWcWwcWW
16 IL_5C5W_0035C5W0.37760Tandem non-canonical cWW pairsARNA (19-mer)C2||||5_556C3||||5_556U4||||5_556G5||||5_556*C15U16A17G18cWWcWWcWwcWW
17 IL_5TBW_0415TBW0.42680Tandem non-canonical cWW pairs1 LSU rRNAA1006U1007U1008A1009*U1041U1042C1043U1044cWWcWwcWW
18 IL_402D_001402D0.41050Tandem non-canonical cWW pairsB+ARNA (8-mer)C111C112A113G114*C103C104A105G106cWWcWWcWWcWW
19 IL_4V88_4734V880.47060Tandem non-canonical cWW pairsA6 SSU rRNAC1675U1676C1677A1678*U1723U1724U1725G1726cWWcwWcWW
20 IL_4V88_3914V880.38030Tandem non-canonical cWW pairsA6 SSU rRNAG109U110U111A112*U302U303U304C305cWWcwWcWwcWW
21 IL_4V88_4294V880.36671Tandem non-canonical cWW pairsA6 SSU rRNAG957U958U960U961*G867G868A869C870cWWncWWcWW
22 IL_6JDV_0016JDV0.53340Tandem non-canonical cWW pairsBsgRNAG66U67U68G69*C32U33C34C35cWWncSWcWwcWW
23 IL_4UYK_0034UYK0.45860Tandem non-canonical cWW pairsRSRP RNAG117U118U119C120*G81U82U83C84cWWcwWcWwcWW
24 IL_2PN3_0042PN30.46410Tandem non-canonical cWW pairsA+BRNA (24-mer) + RNA (20-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
25 IL_4IOA_0414IOA0.42830Tandem non-canonical cWW pairsX LSU rRNAG1196U1197C1198U1199*A1175U1176U1177C1178cWWcwWcWWcWW
26 IL_3TZR_0033TZR0.43120Tandem non-canonical cWW pairsB+ARNA (16-mer)G102U103C104G105*C62U63U64C65cWWcwWcWWcWW
27 IL_4WF9_0854WF90.44821Tandem non-canonical cWW pairsX LSU rRNAG2245U2246G2247G2248*C2229C2231A2232C2233cWWncWWncWWncWW
28 IL_4V88_4314V880.30421Tandem non-canonical cWW pairsA6 SSU rRNAC950A951A952G953*C874G875G877G878cWWcWWcWWcWW
29 IL_5TBW_1005TBW0.26180Tandem non-canonical cWW pairs1 LSU rRNAU2735A2736C2737A2738*U2718U2719G2720A2721cWWcWWcWW
30 IL_5J7L_2835J7L0.00000Tandem non-canonical cWW pairsDA LSU rRNAG1038A1039A1040G1041*C1114G1115G1116C1117cWWcWWcWWcWW
31 IL_4EYA_0104EYA0.31110Tandem non-canonical cWW pairsm+nRNA (12-mer)C6U7U8G9*C6U7U8G9cWWncwWncwWncWW
32 IL_4EYA_0084EYA0.25130Tandem non-canonical cWW pairsl+kRNA (12-mer)C6U7U8G9*C6U7U8G9cWWncwWncwWcWW
33 IL_361D_001361D0.35630Tandem non-canonical cWW pairsBRNA (20-mer)U80G81G82G83*C93C94U95G96cWWncWWacWW
34 IL_6JDV_0026JDV0.31910Tandem non-canonical cWW pairsBsgRNAA63C64C65G66*C35C36U37U38cWWcWWcWW
35 IL_4V88_4384V880.30480Tandem non-canonical cWW pairsA6 SSU rRNAG1074C1075A1076C1077*G1041G1042A1043U1044cWWncBWcWWcWW
36 IL_6DTD_0016DTD0.45300Tandem non-canonical cWW pairsCRNA (37-MER)G5C6A7U8*A31A32A33C34cWWncBWcwWcWW
37 IL_4V88_4304V880.35910Tandem non-canonical cWW pairsA6 SSU rRNAG871G872U873C874*G953G954A955C956cWWcWWcWW
38 IL_4V88_4324V880.40170Tandem non-canonical cWW pairsA6 SSU rRNAG885U886A887U888*A924G925A926C927cWWcWWcWW
39 IL_4P95_0024P950.33750Tandem non-canonical cWW pairsARNA (192-MER)G223G224G225U226*A15G16A17C18cWWcWWcWW
40 IL_5LQO_0025LQO0.27440Tandem non-canonical cWW pairsA+BRNA (10-mer)G4G5A6C7*G4G5A6C7cWWcWWcWWcWW
41 IL_1L9A_0051L9A0.41340Tandem non-canonical cWW pairsBsignal recognition particle RNA S domainG138A139C140C141*G156A157C158C159cWWncWWncWWacWW
42 IL_1JID_0021JID0.33720Tandem non-canonical cWW pairsBHELIX 6 OF HUMAN SRP RNAG138A139C140C141*G156A157C158C159cWWcWWcWWcWW
43 IL_1D4R_0031D4R0.35510Tandem non-canonical cWW pairsA+B29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWcWWcWW
44 IL_1MFQ_0041MFQ0.28800Tandem non-canonical cWW pairsA SRP RNAG138A139C140C141*G156A157C158C159cWWncWWncWWcWW
45 IL_5M73_0065M730.27610Tandem non-canonical cWW pairs (H)A SRP RNAG156A157C158C159*G138A139C140C141cWWncWWncWWcWW
46 IL_3WBM_0023WBM0.29940Tandem non-canonical cWW pairsX+YRNA (25-MER)A10C11C12C13*G14A15C16U17cWWncWBncWWcWW
47 IL_3WBM_0033WBM0.28890Tandem non-canonical cWW pairsY+XRNA (25-MER)A10C11C12C13*G14A15C16U17cWWncWBcWWcWW
48 IL_1D4R_0011D4R0.33800Tandem non-canonical cWW pairsB+A29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWacWWcWW
49 IL_1L9A_0021L9A0.30820Tandem non-canonical cWW pairsBsignal recognition particle RNA S domainG227A228U229C230*G120U121U122C123cWWncWWncwWcWW
50 IL_6CZR_1686CZR0.26430Tandem non-canonical cWW pairs1a SSU rRNAU1463G1464G1465G1466*C1395A1396U1397G1398cWWncWWacWWcWW
51 IL_4K27_0014K270.30910Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC49C50U51G52*C4C5U6G7cWWcWWcWWcWW
52 IL_5EW4_0025EW40.30880Tandem non-canonical cWW pairsA+BRNA (22-mer)C14C15C16G17*C8C9C10G11cWWncWBncWBcWW
53 IL_4K27_0024K270.41440Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC45C46U47G48*C8C9U10G11cWWcWWcWWcWW
54 IL_4K27_0034K270.40510Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC12C13U14G15*C41C42U43G44cWWcWWcWWcWW
55 IL_3CUL_0023CUL0.35730Tandem non-canonical cWW pairsCRNA (92-MER)G56U57G58G59*C87A88G89C90cWWncWWancWWcWW
56 IL_4KZD_0044KZD0.43663Tandem non-canonical cWW pairsRRNA (84-MER)G19A20A21C25*G63A64G65C66cWWcWWcWW
57 IL_4TS2_0054TS20.44193Tandem non-canonical cWW pairsX+YSpinach aptamer RNA, bimolecular constructG22A23A24C28*G74A75G76C77cWWcWWncwWcWW
58 IL_6CZR_1416CZR0.44811Tandem non-canonical cWW pairs1a SSU rRNAG646A647G648G650*U724G725G726U727cWWncWWcwWcWW
59 IL_1G1X_0061G1X0.42451Tandem non-canonical cWW pairsI+J16S RIBOSOMAL RNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
60 IL_1G1X_0031G1X0.40121Tandem non-canonical cWW pairsD+E16S RIBOSOMAL RNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
61 IL_4LFB_0294LFB0.42281Tandem non-canonical cWW pairsA SSU rRNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
62 IL_5J7L_0335J7L0.39171Tandem non-canonical cWW pairsAA SSU rRNAU662A663G664G666*U740G741G742A743cWWcWWcwWcWW
63 IL_4V88_4664V880.53371Non canonical cWW and near pairA6 SSU rRNAA1753A1754A1756||AG1757*C1644G1645C1646U1647cWWntWWncWWcWW
64 IL_6CF2_0016CF20.67651Non canonical cWW and near pairGRNA (35-MER)G27A28A30C31*G5G6A7C8cWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUG*CUUG7
GACC*GACC6
GAGAG*UGGU4
CCUG*CCUG3
CACC*GCAAG2
CCCG*CCCG2
CCUG*CUAG2
ACCC*GACU2
GAAGGAC*GAGC2
GUCU*GGAC1
GAAG*CCUGC1
CUGG*CAGG1
GUGA*UGCC1
AUUG*CUUU1
CUUA*UUUG1
AUUA*UUCU1
CCAG*CCAG1
CUCA*UUUG1
GUUA*UUUC1
GUUUU*GGAC1
GUUG*CUCC1
GUUC*GUUC1
CUUC*GUCG1
GUCU*AUUC1
GUCG*CUUC1
GUGG*CGCAC1
CAAG*CGGGG1
UACA*UUGA1
GAAG*CGGC1
UGGG*CCUG1
ACCG*CCUU1
GCAC*GGAU1
GCAU*AAAC1
GGUC*GGAC1
GUAU*AGAC1
GGGU*AGAC1
GGAC*GGAC1
GAUC*GUUC1
UGGG*CAUG1
GUGG*CAGC1
UAGAG*UGGA1
AAAAG*CGCU1
GAAAC*GGAC1
Non-Watson-Crick part of the motif
SequenceCounts
UU*UU11
AC*AC6
AGA*GG5
UU*UC3
UC*UU3
CU*CU3
AC*CAA2
UG*AG2
CC*CC2
CU*UA2
CC*AC2
AAGGA*AG2
UC*GA1
AA*CUG1
UG*GC1
CA*CA1
UUU*GA1
UG*GCA1
AA*GGG1
AC*UG1
AA*GG1
GG*CU1
CC*CU1
CA*GA1
CA*AA1
GU*GA1
UA*GA1
GG*GA1
GA*GA1
AU*UU1
GG*AU1
AAA*GC1
AAA*GA1

Release history

Release3.453.46
Date2021-05-262021-06-23
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (61)
  • Non canonical cWW and near pair (2)
  • Tandem non-canonical cWW pairs (H) (1)
    • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.50 | Max 1.04
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