6C4H Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6C4H_001 | 1/A/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_6C4H_002 | 1/A/779:785 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_6C4H_003 | 1/A/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_6C4H_004 | 1/A/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_6C4H_005 | 1/A/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_6C4H_007 | 1/A/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_6C4H_008 | 1/A/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_6C4H_010 | 1/A/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_6C4H_011 | 1/A/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_6C4H_012 | 1/A/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_6C4H_013 | 1/A/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_6C4H_014 | 1/A/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_6C4H_015 | 1/A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6C4H_006 | No text annotation | ||
| HL_6C4H_009 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6C4H_001 | 1/A/738:740, 1/A/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_6C4H_002 | 1/A/741:742, 1/A/754:756 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6C4H_003 | 1/A/742:744, 1/A/753:754 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_6C4H_004 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_6C4H_005 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_6C4H_006 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_5J7L_307 IL_82842.2 | |
| IL_6C4H_008 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_37497.2 | |
| IL_6C4H_009 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_6C4H_010 | 1/A/1837:1840, 1/A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_6C4H_011 | 1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_6C4H_012 | 1/A/1933:1934, 1/A/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
| IL_6C4H_013 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation Not in a motif group | homologous IL_5J7L_319 NA | |
| IL_6C4H_014 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_6C4H_015 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_6C4H_016 | 1/A/2064:2066, 1/A/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_6C4H_017 | 1/A/2067:2071, 1/A/2438:2443 | No text annotation Not in a motif group | ||
| IL_6C4H_018 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_6C4H_019 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_6C4H_020 | 1/A/2453:2455, 1/A/2496:2500 | No text annotation Not in a motif group | homologous IL_5J7L_335 NA | |
| IL_6C4H_021 | 1/A/2456:2459, 1/A/2493:2495 | No text annotation Not in a motif group | homologous IL_5J7L_336 NA | |
| IL_6C4H_022 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.2 | |
| IL_6C4H_023 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_6C4H_024 | 1/A/2507:2509, 1/A/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_6C4H_025 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_90933.2 | |
| IL_6C4H_026 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_6C4H_027 | 1/A/2522:2523, 1/A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7A0S_091 IL_95601.3 | |
| IL_6C4H_028 | 1/A/2588:2590, 1/A/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_6C4H_029 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6C4H_007 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6C4H_001 | 1/A/1833:1836, 1/A/1904:1933, 1/A/1967:1972 | No text annotation Not in a motif group | ||
| J3_6C4H_002 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA |
Problematic loops
No problematic loops
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