RNA 3D Hub //

6NU3 Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6NU3_0011/A/1722:1729No text annotation
Not in a motif group		geometric
HL_4WF9_006
HL_06192.2
HL_6NU3_0021/A/1746:1752No text annotation
Not in a motif group		geometric
HL_4WF9_003
HL_75407.1
HL_6NU3_0031/A/1786:1791GNRA
Not in a motif group		homologous
HL_4WF9_015
HL_42097.1
HL_6NU3_0041/A/1803:1807No text annotation
Not in a motif group
HL_6NU3_0051/A/1831:1839No text annotation
Not in a motif group
HL_6NU3_0061/A/1847:1856No text annotation
Not in a motif group		homologous
HL_7A0S_018
HL_89380.2
HL_6NU3_0071/A/1884:1889No text annotation
Not in a motif group		geometric
HL_4WF9_003
HL_75407.1
HL_6NU3_0081/A/1934:1940No text annotation
Not in a motif group
HL_6NU3_0091/A/1954:1963No text annotation
Not in a motif group		homologous
HL_4WF9_023
HL_39334.6
HL_6NU3_0101/A/1988:1996No text annotation
Not in a motif group		geometric
HL_5TBW_021
HL_33817.1
HL_6NU3_0111/A/2035:2040No text annotation
Not in a motif group		homologous
HL_4WF9_025
HL_64365.1
HL_6NU3_0121/A/2064:2075No text annotation
Not in a motif group
HL_6NU3_0131/A/2107:2114No text annotation
Not in a motif group		homologous
HL_7A0S_026
HL_42097.1
HL_6NU3_0141/A/2129:2136No text annotation
Not in a motif group		homologous
HL_5J7L_160
HL_64430.2
HL_6NU3_0151/A/2175:2185No text annotation
Not in a motif group		homologous
HL_6PRV_001
HL_07145.1
HL_6NU3_0161/A/2201:2210No text annotation
Not in a motif group		geometric
HL_5TBW_028
HL_09136.1
HL_6NU3_0171/A/2279:2286No text annotation
Not in a motif group		geometric
HL_2Y9H_005
HL_47100.1
HL_6NU3_0181/A/2318:2325No text annotation
Not in a motif group		geometric
HL_5NFV_001
HL_76539.2
HL_6NU3_0191/A/2349:2364No text annotation
Not in a motif group		geometric
HL_5NFV_001
HL_76539.2
HL_6NU3_0201/A/2400:2403No text annotation
Not in a motif group		geometric
HL_5F9R_002
HL_38927.2
HL_6NU3_0211/A/2428:2435No text annotation
Not in a motif group		homologous
HL_4WF9_038
HL_64430.2
HL_6NU3_0221/A/2497:2507No text annotation
Not in a motif group		homologous
HL_4WF9_043
HL_43613.5
HL_6NU3_0231/A/2518:2532No text annotation
Not in a motif group
HL_6NU3_0241/A/2555:2560No text annotation
Not in a motif group		geometric
HL_4O26_001
HL_56691.2
HL_6NU3_0251/A/2574:2583Other HL
Not in a motif group		geometric
HL_1P6V_001
HL_03562.2
HL_6NU3_0261/A/2612:2620No text annotation
Not in a motif group		homologous
HL_7A0S_048
HL_51824.1
HL_6NU3_0271/A/2690:2699No text annotation
Not in a motif group		homologous
HL_4WF9_047
HL_90642.6
HL_6NU3_0281/A/2753:2795No text annotation
Not in a motif group		geometric
HL_2ZZM_002
HL_23083.1
HL_6NU3_0291/A/2812:2820No text annotation
Not in a motif group		homologous
HL_7A0S_052
HL_53171.2
HL_6NU3_0301/A/2828:2840No text annotation
Not in a motif group
HL_6NU3_0311/A/2862:2870No text annotation
Not in a motif group		geometric
HL_5U3G_001
HL_87030.2
HL_6NU3_0321/A/2902:2907GNRA
Not in a motif group		geometric
HL_5M0I_001
HL_42097.1
HL_6NU3_0331/A/2958:2966No text annotation
Not in a motif group		homologous
HL_4WF9_056
HL_06192.2
HL_6NU3_0341/A/3015:3022No text annotation
Not in a motif group		homologous
HL_4WF9_057
HL_88526.2
HL_6NU3_0351/A/3038:3044No text annotation
Not in a motif group		homologous
HL_4WF9_058
HL_43656.2
HL_6NU3_0361/A/3081:3086GNRA
Not in a motif group		homologous
HL_5J7L_196
HL_42097.1
HL_6NU3_0371/A/3126:3131GNRA
Not in a motif group		geometric
HL_5DCV_002
HL_42097.1
HL_6NU3_0381/A/3154:3159No text annotation
Not in a motif group
HL_6NU3_0391/A/3176:3193No text annotation
Not in a motif group
HL_6NU3_0401/A/3216:3224No text annotation
Not in a motif group		geometric
HL_7RQB_068
HL_27930.1
HL_6NU3_0411/AA/654:664No text annotation
Not in a motif group		geometric
HL_5J7L_001
HL_89881.2
HL_6NU3_0421/AA/701:708No text annotation
Not in a motif group
HL_6NU3_0431/AA/768:773No text annotation
Not in a motif group		geometric
HL_4YAZ_004
HL_56691.2
HL_6NU3_0441/AA/792:796No text annotation
Not in a motif group		geometric
HL_5F9R_002
HL_38927.2
HL_6NU3_0451/AA/804:809No text annotation
Not in a motif group		geometric
HL_6CZR_089
HL_53837.1
HL_6NU3_0461/AA/842:847No text annotation
Not in a motif group
HL_6NU3_0471/AA/894:899No text annotation
Not in a motif group
HL_6NU3_0481/AA/988:999No text annotation
Not in a motif group
HL_6NU3_0491/AA/1023:1028GNRA
Not in a motif group		geometric
HL_5F9F_003
HL_42097.1
HL_6NU3_0501/AA/1074:1084No text annotation
Not in a motif group
HL_6NU3_0511/AA/1115:1126No text annotation
Not in a motif group		geometric
HL_2Y8W_001
HL_01057.1
HL_6NU3_0521/AA/1150:1155No text annotation
Not in a motif group		geometric
HL_7RQB_009
HL_89098.1
HL_6NU3_0531/AA/1217:1226No text annotation
Not in a motif group		geometric
HL_4V88_198
HL_56691.2
HL_6NU3_0541/AA/1281:1287No text annotation
Not in a motif group
HL_6NU3_0551/AA/1310:1315No text annotation
Not in a motif group
HL_6NU3_0561/AA/1373:1379No text annotation
Not in a motif group
HL_6NU3_0571/AA/1399:1407No text annotation
Not in a motif group
HL_6NU3_0581/AA/1440:1450No text annotation
Not in a motif group
HL_6NU3_0591/AA/1521:1529No text annotation
Not in a motif group
HL_6NU3_0601/AA/1580:1585No text annotation
Not in a motif group		geometric
HL_5NFV_001
HL_76539.2
HL_6NU3_0611/B/1613:1622No text annotation
Not in a motif group		geometric
HL_5B63_003
HL_25462.2
HL_6NU3_0621/B/1630:1638Guanidine riboswitch aptamer P2 hairpin
Not in a motif group		geometric
HL_5T83_002
HL_53597.2

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6NU3_0011/A/1682:1683,
1/A/1768:1770		Single bulged A
Not in a motif group		homologous
IL_7A0S_002
IL_37497.2
IL_6NU3_0021/A/1739:1745,
1/A/1753:1758		7x6 Sarcin-Ricin; G-bulge
Not in a motif group		geometric
IL_5J7L_251
IL_76042.2
IL_6NU3_0031/A/1845:1847,
1/A/1856:1858		No text annotation
Not in a motif group		geometric
IL_7A0S_107
IL_51629.2
IL_6NU3_0041/A/1875:1876,
1/A/1897:1899		Single stack bend
Not in a motif group		geometric
IL_7RQB_058
IL_76488.2
IL_6NU3_0051/A/1876:1879,
1/A/1895:1897		No text annotation
Not in a motif group		geometric
IL_4V9F_053
IL_46796.1
IL_6NU3_0061/A/1880:1883,
1/A/1890:1894		No text annotation
Not in a motif group
IL_6NU3_0071/A/1904:1906,
1/A/2016:2018		No text annotation
Not in a motif group		geometric
IL_5TBW_027
IL_95997.1
IL_6NU3_0081/A/1906:1910,
1/A/2009:2016		tHW-tHW cross-strand stack
Not in a motif group		homologous
IL_5J7L_260
IL_17470.6
IL_6NU3_0091/A/1913:1915,
1/A/2004:2006		CC cWW
Not in a motif group		geometric
IL_4E59_001
IL_95997.1
IL_6NU3_0101/A/1925:1927,
1/A/1977:1979		No text annotation
Not in a motif group		geometric
IL_5TBW_112
IL_95997.1
IL_6NU3_0111/A/1929:1930,
1/A/1973:1975		Single bulged A
Not in a motif group		geometric
IL_4V9F_025
IL_37497.2
IL_6NU3_0121/A/1948:1951,
1/A/1966:1968		Major groove platform with extra cWW
Not in a motif group		homologous
IL_7A0S_019
IL_05564.2
IL_6NU3_0131/A/1985:1987,
1/A/1997:2001		Multiple bulged bases
Not in a motif group		geometric
IL_7A0S_021
IL_90991.6
IL_6NU3_0141/A/2046:2049,
1/A/2091:2094		No text annotation
Not in a motif group
IL_6NU3_0151/A/2049:2050,
1/A/2089:2091		No text annotation
Not in a motif group
IL_6NU3_0161/A/2052:2053,
1/A/2085:2087		Not an internal loop
Not in a motif group		geometric
IL_4LFB_053
IL_93353.1
IL_6NU3_0171/A/2053:2055,
1/A/2084:2085		No text annotation
Not in a motif group
IL_6NU3_0181/A/2057:2063,
1/A/2076:2082		No text annotation
Not in a motif group
IL_6NU3_0191/A/2145:2147,
1/A/2254:2255		Single bulged C
Not in a motif group		homologous
IL_5J7L_276
IL_61258.12
IL_6NU3_0201/A/2149:2153,
1/A/2248:2252		UAA/GAN
Not in a motif group		homologous
IL_7A0S_033
IL_89002.2
IL_6NU3_0211/A/2168:2170,
1/A/2190:2192		Isolated near basepair
Not in a motif group		geometric
IL_4V88_406
IL_52767.2
IL_6NU3_0221/A/2170:2174,
1/A/2186:2190		No text annotation
Not in a motif group
IL_6NU3_0231/A/2197:2200,
1/A/2211:2212		No text annotation
Not in a motif group		homologous
IL_6PRV_002
NA
IL_6NU3_0241/A/2306:2313,
1/A/2674:2680		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5J7L_289
IL_04346.7
IL_6NU3_0251/A/2329:2333,
1/A/2441:2448		No text annotation
Not in a motif group
IL_6NU3_0261/A/2377:2381,
1/A/2411:2419		No text annotation
Not in a motif group
IL_6NU3_0271/A/2456:2461,
1/A/2666:2668		No text annotation
Not in a motif group
IL_6NU3_0281/A/2467:2469,
1/A/2658:2660		Isolated tWW turn
Not in a motif group		homologous
IL_4WF9_063
IL_54997.7
IL_6NU3_0291/A/2470:2473,
1/A/2656:2657		Major groove platform; stack outside cWW
Not in a motif group		homologous
IL_4WF9_064
IL_50694.2
IL_6NU3_0301/A/2473:2478,
1/A/2653:2656		No text annotation
Not in a motif group
IL_6NU3_0311/A/2478:2487,
1/A/2648:2653		No text annotation
Not in a motif group
IL_6NU3_0321/A/2490:2491,
1/A/2643:2645		Single bulged A
Not in a motif group		homologous
IL_5J7L_312
IL_37497.2
IL_6NU3_0331/A/2548:2551,
1/A/2566:2567		Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group		homologous
IL_5J7L_314
IL_88739.1
IL_6NU3_0341/A/2552:2553,
1/A/2562:2565		Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group		homologous
IL_7A0S_067
IL_16396.2
IL_6NU3_0351/A/2596:2597,
1/A/2627:2630		Multiple bulged bases
Not in a motif group		geometric
IL_7V9E_001
IL_59677.2
IL_6NU3_0361/A/2597:2608,
1/A/2624:2627		No text annotation
Not in a motif group
IL_6NU3_0371/A/2712:2715,
1/A/3104:3106		No text annotation
Not in a motif group		geometric
IL_6DME_003
IL_63450.2
IL_6NU3_0381/A/2717:2719,
1/A/3099:3102		No text annotation
Not in a motif group		homologous
IL_4WF9_079
IL_54678.5
IL_6NU3_0391/A/2730:2732,
1/A/2929:2930		Single bulged U
Not in a motif group		homologous
IL_7A0S_075
IL_83039.13
IL_6NU3_0401/A/2733:2734,
1/A/2925:2928		Minor groove platform
Not in a motif group		homologous
IL_4WF9_081
IL_42622.2
IL_6NU3_0411/A/2744:2746,
1/A/2802:2803		Minor groove platform
Not in a motif group		geometric
IL_7RQB_028
IL_42622.2
IL_6NU3_0421/A/2849:2855,
1/A/2877:2889		No text annotation
Not in a motif group
IL_6NU3_0431/A/2857:2860,
1/A/2872:2875		Double sheared
Not in a motif group		geometric
IL_1SAQ_002
IL_09705.9
IL_6NU3_0441/A/2940:2941,
1/A/2985:2987		Single stack bend
Not in a motif group		geometric
IL_7RQB_091
IL_76488.2
IL_6NU3_0451/A/2941:2942,
1/A/2983:2985		Major groove platform
Not in a motif group		homologous
IL_4WF9_090
IL_27635.1
IL_6NU3_0461/A/2943:2946,
1/A/2980:2982		No text annotation
Not in a motif group		geometric
IL_6DME_003
IL_63450.2
IL_6NU3_0471/A/2946:2949,
1/A/2975:2980		No text annotation
Not in a motif group
IL_6NU3_0481/A/2953:2955,
1/A/2968:2971		No text annotation
Not in a motif group		geometric
IL_4P3T_002
IL_46796.1
IL_6NU3_0491/A/2955:2957,
1/A/2967:2968		Minor groove platform
Not in a motif group		geometric
IL_4V88_388
IL_93353.1
IL_6NU3_0501/A/2994:2995,
1/A/3067:3069		Major groove platform
Not in a motif group		geometric
IL_5TBW_104
IL_76223.2
IL_6NU3_0511/A/2997:2999,
1/A/3061:3065		Isolated non-canonical cWW with bulges
Not in a motif group		homologous
IL_4WF9_095
IL_90933.2
IL_6NU3_0521/A/2999:3000,
1/A/3058:3061		Multiple bulged bases
Not in a motif group		geometric
IL_7RQB_098
IL_71530.2
IL_6NU3_0531/A/3008:3010,
1/A/3027:3031		No text annotation
Not in a motif group
IL_6NU3_0541/A/3078:3079,
1/A/3088:3090		Single bulged A
Not in a motif group		homologous
IL_5J7L_344
IL_37497.2
IL_6NU3_0551/A/3115:3117,
1/A/3139:3141		No text annotation
Not in a motif group		geometric
IL_1Z7F_002
IL_95997.1
IL_6NU3_0561/A/3119:3126,
1/A/3131:3137		No text annotation
Not in a motif group
IL_6NU3_0571/A/3148:3152,
1/A/3161:3163		No text annotation
Not in a motif group
IL_6NU3_0581/AA/649:651,
1/AA/667:668		No text annotation
Not in a motif group
IL_6NU3_0591/AA/674:676,
1/AA/921:923		No text annotation
Not in a motif group		geometric
IL_4V88_470
IL_51629.2
IL_6NU3_0601/AA/685:686,
1/AA/859:861		Single bulged A
Not in a motif group		homologous
IL_4LFB_002
IL_37497.2
IL_6NU3_0611/AA/690:692,
1/AA/822:823		Single bulged A
Not in a motif group		geometric
IL_2VPL_002
IL_37497.2
IL_6NU3_0621/AA/694:696,
1/AA/819:820		Minor groove platform
Not in a motif group		geometric
IL_4LFB_004
IL_93353.1
IL_6NU3_0631/AA/727:732,
1/AA/742:747		No text annotation
Not in a motif group
IL_6NU3_0641/AA/756:761,
1/AA/779:786		Kink-turn with non-sequential stacking
Not in a motif group		geometric
IL_4LFB_011
IL_45067.2
IL_6NU3_0651/AA/762:765,
1/AA/777:778		Major groove platform; stack outside cWW
Not in a motif group		geometric
IL_6CZR_139
IL_50694.2
IL_6NU3_0661/AA/765:766,
1/AA/775:777		No text annotation
Not in a motif group
IL_6NU3_0671/AA/830:832,
1/AA/855:856		Single bulged U
Not in a motif group		geometric
IL_5J7L_017
IL_83039.13
IL_6NU3_0681/AA/834:838,
1/AA/852:853		No text annotation
Not in a motif group
IL_6NU3_0691/AA/838:840,
1/AA/849:852		CC cWW
Not in a motif group		geometric
IL_4J39_001
IL_95997.1
IL_6NU3_0701/AA/876:885,
1/AA/910:913		No text annotation
Not in a motif group
IL_6NU3_0711/AA/887:893,
1/AA/900:908		No text annotation
Not in a motif group
IL_6NU3_0721/AA/935:941,
1/AA/1133:1134		Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group		geometric
IL_1U9S_003
IL_69996.1
IL_6NU3_0731/AA/946:950,
1/AA/1044:1049		No text annotation
Not in a motif group
IL_6NU3_0741/AA/974:981,
1/AA/1007:1014		No text annotation
Not in a motif group
IL_6NU3_0751/AA/981:984,
1/AA/1004:1007		No text annotation
Not in a motif group
IL_6NU3_0761/AA/986:988,
1/AA/999:1002		No text annotation
Not in a motif group
IL_6NU3_0771/AA/1020:1022,
1/AA/1029:1030		No text annotation
Not in a motif group
IL_6NU3_0781/AA/1062:1066,
1/AA/1092:1093		No text annotation
Not in a motif group
IL_6NU3_0791/AA/1067:1072,
1/AA/1086:1091		No text annotation
Not in a motif group
IL_6NU3_0801/AA/1109:1111,
1/AA/1130:1132		No text annotation
Not in a motif group		geometric
IL_7A0S_026
IL_51629.2
IL_6NU3_0811/AA/1138:1147,
1/AA/1158:1165		No text annotation
Not in a motif group
IL_6NU3_0821/AA/1175:1177,
1/AA/1476:1479		No text annotation
Not in a motif group
IL_6NU3_0831/AA/1178:1180,
1/AA/1474:1475		Single bulged G
Not in a motif group		homologous
IL_6CZR_148
IL_00225.2
IL_6NU3_0841/AA/1186:1191,
1/AA/1463:1468		No text annotation
Not in a motif group
IL_6NU3_0851/AA/1206:1209,
1/AA/1355:1359		No text annotation
Not in a motif group
IL_6NU3_0861/AA/1244:1252,
1/AA/1340:1345		No text annotation
Not in a motif group
IL_6NU3_0871/AA/1253:1255,
1/AA/1338:1339		Single bulged C
Not in a motif group		geometric
IL_1S03_002
IL_61258.12
IL_6NU3_0881/AA/1256:1261,
1/AA/1334:1337		No text annotation
Not in a motif group
IL_6NU3_0891/AA/1262:1265,
1/AA/1327:1333		No text annotation
Not in a motif group
IL_6NU3_0901/AA/1265:1268,
1/AA/1323:1327		No text annotation
Not in a motif group
IL_6NU3_0911/AA/1274:1277,
1/AA/1298:1301		Double sheared
Not in a motif group		geometric
IL_5J7L_256
IL_09705.9
IL_6NU3_0921/AA/1278:1279,
1/AA/1289:1297		Multiple bulged bases
Not in a motif group		geometric
IL_5WLH_001
IL_44546.1
IL_6NU3_0931/AA/1308:1309,
1/AA/1316:1318		No text annotation
Not in a motif group
IL_6NU3_0941/AA/1388:1393,
1/AA/1413:1418		No text annotation
Not in a motif group
IL_6NU3_0951/AA/1483:1485,
1/AA/1566:1569		No text annotation
Not in a motif group		homologous
IL_5J7L_058
IL_36143.3
IL_6NU3_0961/AA/1485:1489,
1/AA/1561:1566		No text annotation
Not in a motif group
IL_6NU3_0971/AA/1489:1491,
1/AA/1559:1561		No text annotation
Not in a motif group
IL_6NU3_0981/AA/1491:1495,
1/AA/1554:1559		No text annotation
Not in a motif group
IL_6NU3_0991/AA/1500:1504,
1/AA/1546:1549		No text annotation
Not in a motif group
IL_6NU3_1001/AA/1507:1510,
1/AA/1540:1543		No text annotation
Not in a motif group
IL_6NU3_1011/AA/1510:1511,
1/AA/1538:1540		No text annotation
Not in a motif group
IL_6NU3_1021/AA/1511:1516,
1/AA/1533:1538		No text annotation
Not in a motif group
IL_6NU3_1031/AA/1516:1521,
1/AA/1529:1533		No text annotation
Not in a motif group
IL_6NU3_1041/B/1627:1629,
1/B/1639:1641		No text annotation
Not in a motif group		geometric
IL_3MEI_002
IL_95997.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6NU3_0011/A/1915:1921,
1/A/1983:1985,
1/A/2001:2004		No text annotation
Not in a motif group		homologous
J3_7A0S_004
NA
J3_6NU3_0021/A/1930:1932,
1/A/1942:1946,
1/A/1970:1973		No text annotation
Not in a motif group		homologous
J3_4WF9_003
NA
J3_6NU3_0031/A/2336:2343,
1/A/2423:2427,
1/A/2436:2438		No text annotation
Not in a motif group
J3_6NU3_0041/A/2343:2345,
1/A/2368:2375,
1/A/2421:2423		No text annotation
Not in a motif group
J3_6NU3_0051/A/3004:3007,
1/A/3032:3034,
1/A/3048:3054		No text annotation
Not in a motif group		homologous
J3_4WF9_009
NA
J3_6NU3_0061/AA/677:680,
1/AA/866:872,
1/AA/917:920		No text annotation
Not in a motif group
J3_6NU3_0071/AA/687:690,
1/AA/823:830,
1/AA/856:858		No text annotation
Not in a motif group
J3_6NU3_0081/AA/973:974,
1/AA/1014:1020,
1/AA/1030:1031		No text annotation
Not in a motif group
J3_6NU3_0091/AA/1192:1194,
1/AA/1428:1434,
1/AA/1456:1462		No text annotation
Not in a motif group
J3_6NU3_0101/AA/1198:1201,
1/AA/1364:1366,
1/AA/1421:1424		No text annotation
Not in a motif group
J3_6NU3_0111/AA/1209:1216,
1/AA/1227:1238,
1/AA/1351:1355		No text annotation
Not in a motif group
J3_6NU3_0121/AA/1268:1273,
1/AA/1302:1308,
1/AA/1318:1323		No text annotation
Not in a motif group
J3_6NU3_0131/AA/1366:1370,
1/AA/1382:1388,
1/AA/1418:1421		No text annotation
Not in a motif group

Problematic loops

No problematic loops


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