JAR3D
Query RF00210-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 19 4-way junction loop
Column numbers: 182-184, 217-219, 229-232, 244-245 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.
Scored sequences and counts
GCC*GGG*CACG*CC 67
GCG*CGG*CACG*CC 14
GCU*GGG*CACG*CC 4
GCC*GGG*CAUG*CC 2
GGC*GUG*CCAG*CC 2
GCC*GGG*CAAG*CC 1
GCC*GGG*CGCG*CC 1
-CC*GGG*CAAG*CC 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group J4_10571.1
Basepair signature:
|
2.17 | -28.20 | 10 | 4 |
|
| 2 |
Motif group J4_43687.2
Basepair signature:
|
0.00 | -14.55 | 3 | 1 |
|
| 3 |
Motif group J4_28473.1
Basepair signature:
|
0.00 | -25.91 | 11 | 3 |
|
| 4 |
Motif group J4_36296.3
Basepair signature:
|
0.00 | -56.27 | 7 | 5 |
tRNA junction |
| 5 |
Motif group J4_36540.1
Basepair signature:
|
0.00 | -64.99 | 11 | 4 |
|
| 6 |
Motif group J4_47478.1
Basepair signature:
|
0.00 | -72.73 | 7 | 5 |
|
| 7 |
Motif group J4_69073.1
Basepair signature:
|
0.00 | -72.73 | 7 | 5 |
|
| 8 |
Motif group J4_70449.28
Basepair signature:
|
0.00 | -76.54 | 7 | 3 |
tRNA junction |
| 9 |
Motif group J4_77044.4
Basepair signature:
|
0.00 | -78.30 | 7 | 5 |
|
| 10 |
Motif group J4_28426.1
Basepair signature:
|
0.00 | -83.77 | 6 | 4 |
SAM-I/IV riboswitch junction |
| 11 |
Motif group J4_57344.1
Basepair signature:
|
0.00 | -85.17 | 9 | 3 |
|
| 12 |
Motif group J4_65356.1
Basepair signature:
|
0.00 | -86.11 | 7 | 2 |
|
| 13 |
Motif group J4_80390.1
Basepair signature:
|
0.00 | -87.42 | 8 | 6 |
tRNA junction |
| 14 |
Motif group J4_26776.1
Basepair signature:
|
0.00 | -90.77 | 11 | 6 |
|
| 15 |
Motif group J4_65052.1
Basepair signature:
|
0.00 | -97.11 | 9 | 4 |
|
| 16 |
Motif group J4_99897.1
Basepair signature:
|
0.00 | -100.04 | 9 | 5 |
|
| 17 |
Motif group J4_40477.1
Basepair signature:
|
0.00 | -101.90 | 11 | 6 |
tRNA junction |
| 18 |
Motif group J4_97085.2
Basepair signature:
|
0.00 | -105.25 | 10 | 4 |
|
| 19 |
Motif group J4_48692.1
Basepair signature:
|
0.00 | -107.93 | 10 | 5 |
|
| 20 |
Motif group J4_72305.5
Basepair signature:
|
0.00 | -108.68 | 8 | 4 |
tRNA junction |
| 21 |
Motif group J4_45582.1
Basepair signature:
|
0.00 | -113.66 | 10 | 4 |
|
| 22 |
Motif group J4_95838.1
Basepair signature:
|
0.00 | -116.10 | 8 | 5 |
|
| 23 |
Motif group J4_65285.1
Basepair signature:
|
0.00 | -137.38 | 11 | 7 |
tRNA junction |
| 24 |
Motif group J4_54165.1
Basepair signature:
|
0.00 | -142.99 | 11 | 7 |
|
| 25 |
Motif group J4_71729.5
Basepair signature:
|
0.00 | -151.87 | 8 | 6 |
|
| 26 |
Motif group J4_94519.1
Basepair signature:
|
0.00 | -152.07 | 14 | 7 |
tRNA junction |
| 27 |
Motif group J4_80682.1
Basepair signature:
|
0.00 | -156.35 | 11 | 7 |
tRNA junction |
| 28 |
Motif group J4_87855.1
Basepair signature:
|
0.00 | -160.54 | 12 | 7 |
|
| 29 |
Motif group J4_47842.1
Basepair signature:
|
0.00 | -162.41 | 15 | 7 |
|
| 30 |
Motif group J4_04930.6
Basepair signature:
|
0.00 | -164.20 | 12 | 7 |
|
| 31 |
Motif group J4_24220.1
Basepair signature:
|
0.00 | -164.36 | 10 | 6 |
|
| 32 |
Motif group J4_64571.5
Basepair signature:
|
0.00 | -169.03 | 6 | 6 |
|
| 33 |
Motif group J4_47701.1
Basepair signature:
|
0.00 | -171.17 | 12 | 8 |
|
| 34 |
Motif group J4_91813.1
Basepair signature:
|
0.00 | -179.82 | 11 | 7 |
|
| 35 |
Motif group J4_44058.1
Basepair signature:
|
0.00 | -181.70 | 15 | 8 |
|
| 36 |
Motif group J4_12410.1
Basepair signature:
|
0.00 | -182.66 | 9 | 8 |
|
| 37 |
Motif group J4_35578.3
Basepair signature:
|
0.00 | -182.93 | 12 | 7 |
|
| 38 |
Motif group J4_88771.1
Basepair signature:
|
0.00 | -186.25 | 10 | 8 |
|
| 39 |
Motif group J4_63076.1
Basepair signature:
|
0.00 | -189.32 | 8 | 5 |
class I ligase product junction |
| 40 |
Motif group J4_40439.2
Basepair signature:
|
0.00 | -192.52 | 11 | 7 |
SAM-I riboswitch junction |
| 41 |
Motif group J4_24280.2
Basepair signature:
|
0.00 | -193.62 | 8 | 3 |
|
| 42 |
Motif group J4_59634.1
Basepair signature:
|
0.00 | -194.61 | 11 | 7 |
|
| 43 |
Motif group J4_16596.1
Basepair signature:
|
0.00 | -194.84 | 8 | 8 |
Cobalamin riboswitch junction |
| 44 |
Motif group J4_75852.1
Basepair signature:
|
0.00 | -196.07 | 14 | 8 |
|
| 45 |
Motif group J4_07491.2
Basepair signature:
|
0.00 | -203.57 | 8 | 5 |
Purine riboswitch junction |
| 46 |
Motif group J4_13620.1
Basepair signature:
|
0.00 | -205.45 | 15 | 9 |
|
| 47 |
Motif group J4_89787.1
Basepair signature:
|
0.00 | -207.45 | 10 | 9 |
|
| 48 |
Motif group J4_59845.1
Basepair signature:
|
0.00 | -209.40 | 12 | 8 |
|
| 49 |
Motif group J4_10313.5
Basepair signature:
|
0.00 | -215.63 | 13 | 8 |
|
| 50 |
Motif group J4_01665.1
Basepair signature:
|
0.00 | -216.11 | 10 | 9 |
|
| 51 |
Motif group J4_11418.1
Basepair signature:
|
0.00 | -220.18 | 13 | 9 |
|
| 52 |
Motif group J4_57327.1
Basepair signature:
|
0.00 | -220.82 | 13 | 11 |
|
| 53 |
Motif group J4_45801.6
Basepair signature:
|
0.00 | -226.82 | 11 | 8 |
|
| 54 |
Motif group J4_00691.2
Basepair signature:
|
0.00 | -237.51 | 4 | 4 |
|
| 55 |
Motif group J4_61477.5
Basepair signature:
|
0.00 | -238.61 | 15 | 8 |
|
| 56 |
Motif group J4_61885.6
Basepair signature:
|
0.00 | -243.01 | 13 | 11 |
|
| 57 |
Motif group J4_76096.5
Basepair signature:
|
0.00 | -293.34 | 7 | 4 |
|
| 58 |
Motif group J4_69051.6
Basepair signature:
|
0.00 | -295.91 | 12 | 10 |
|
| 59 |
Motif group J4_15241.1
Basepair signature:
|
0.00 | -305.79 | 12 | 11 |
|
| 60 |
Motif group J4_46448.1
Basepair signature:
|
0.00 | -315.20 | 10 | 5 |
|
| 61 |
Motif group J4_07509.2
Basepair signature:
|
0.00 | -319.24 | 18 | 11 |
|
| 62 |
Motif group J4_70672.1
Basepair signature:
|
0.00 | -322.71 | 17 | 14 |
|
| 63 |
Motif group J4_98739.1
Basepair signature:
|
0.00 | -409.11 | 18 | 16 |
|
| 64 |
Motif group J4_12209.1
Basepair signature:
|
0.00 | -442.94 | 21 | 17 |
RNase P junction |
| 65 |
Motif group J4_63658.1
Basepair signature:
|
0.00 | -467.17 | 15 | 12 |
|
| 66 |
Motif group J4_60168.1
Basepair signature:
|
0.00 | -508.00 | 13 | 10 |
|
| 67 |
Motif group J4_19572.1
Basepair signature:
|
0.00 | -556.46 | 23 | 20 |
RNase P junction |
| 68 |
Motif group J4_04237.1
Basepair signature:
|
0.00 | -611.38 | 24 | 22 |
|
| 69 |
Motif group J4_93343.1
Basepair signature:
|
0.00 | -624.21 | 14 | 12 |
|