Valid loops

No loops found

Problematic loops

#loop idProblemSequence
HL_1FFZ_001
homologous
HL_4V9F_052
HL_1FFZ_002NA
HL_1FFZ_003GNRA
homologous
HL_4V9F_054
HL_1FFZ_004
homologous
HL_4V9F_055
HL_1FFZ_005
homologous
HL_4V9F_056
HL_1FFZ_006NA
HL_1FFZ_007
homologous
HL_4V9F_058
HL_1FFZ_008
homologous
HL_4V9F_059
HL_1FFZ_009GNRA
homologous
HL_4V9F_060
HL_1FFZ_010
homologous
HL_4V9F_061
HL_1FFZ_011
homologous
HL_4V9F_062
HL_1FFZ_012
homologous
HL_4V9F_063
HL_1FFZ_013NA
HL_1FFZ_014GNRA
homologous
HL_4V9F_065

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A/2491:2497,
1/A/2523:2530
NANA

Problematic loops

#loop idProblemSequence
IL_1FFZ_001
homologous
IL_4V9F_072
IL_1FFZ_002
homologous
IL_4V9F_073
IL_1FFZ_003
geometric
IL_5J7L_259
IL_1FFZ_004Single bulged U
geometric
IL_4WF9_080
IL_1FFZ_005Minor groove platform
homologous
IL_4V9F_075
IL_1FFZ_006Isolated tHS basepair with bulges
homologous
IL_4V9F_076
IL_1FFZ_007Single bulged A
homologous
IL_4V9F_079
IL_1FFZ_008Isolated tHS basepair with bulges
homologous
IL_4V9F_080
IL_1FFZ_009NA
IL_1FFZ_010Major groove platform with extra pair
geometric
IL_5TBW_091
IL_1FFZ_012Triple sheared
homologous
IL_4V9F_085
IL_1FFZ_013Major groove platform
homologous
IL_4V9F_086
IL_1FFZ_014Isolated non-canonical cWW with bulges
geometric
IL_4V9F_087
IL_1FFZ_015Multiple bulged bases
homologous
IL_4V9F_088
IL_1FFZ_016Minor groove platform with intercalation
homologous
IL_4V9F_089
IL_1FFZ_017Single bulged A
geometric
IL_7RQB_101

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A/2329:2331,
1/A/2355:2357,
1/A/2366:2371
NANA

Problematic loops

#loop idProblemSequence
J3_1FFZ_001
homologous
J3_4V9F_007
J3_1FFZ_003
homologous
J3_4V9F_009

Coloring options:
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