1FFZ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1FFZ_001 | No text annotation | ||
| HL_1FFZ_002 | No text annotation | ||
| HL_1FFZ_015 | GNRA with near cWW | ||
| HL_1FFZ_003 | GNRA | ||
| HL_1FFZ_004 | No text annotation | ||
| HL_1FFZ_005 | No text annotation | ||
| HL_1FFZ_006 | No text annotation | ||
| HL_1FFZ_007 | Pseudoknot geometry | ||
| HL_1FFZ_008 | No text annotation | ||
| HL_1FFZ_009 | GNRA | ||
| HL_1FFZ_010 | Pseudoknot geometry | ||
| HL_1FFZ_011 | No text annotation | ||
| HL_1FFZ_012 | No text annotation | ||
| HL_1FFZ_013 | tRNA D-loop | ||
| HL_1FFZ_016 | No text annotation | ||
| HL_1FFZ_014 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1FFZ_022 | 1/A/2491:2496, 1/A/2524:2530 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1FFZ_001 | No text annotation | ||
| IL_1FFZ_002 | No text annotation | ||
| IL_1FFZ_018 | No text annotation | ||
| IL_1FFZ_003 | Isolated non-canonical cWW pair | ||
| IL_1FFZ_004 | Single bulged U | ||
| IL_1FFZ_005 | Minor groove platform | ||
| IL_1FFZ_006 | Isolated tHS basepair with bulges | ||
| IL_1FFZ_007 | Single bulged A | ||
| IL_1FFZ_008 | Isolated tHS basepair with bulges | ||
| IL_1FFZ_019 | Single stack bend | ||
| IL_1FFZ_009 | No text annotation | ||
| IL_1FFZ_020 | Major groove platform | ||
| IL_1FFZ_010 | Major groove platform with extra pair | ||
| IL_1FFZ_011 | No text annotation | ||
| IL_1FFZ_012 | Triple sheared | ||
| IL_1FFZ_013 | Major groove platform | ||
| IL_1FFZ_014 | Isolated non-canonical cWW pair | ||
| IL_1FFZ_015 | Multiple bulged bases | ||
| IL_1FFZ_016 | Major groove platform with intercalation | ||
| IL_1FFZ_021 | Isolated non-canonical cWW pair | ||
| IL_1FFZ_017 | Single bulged A |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1FFZ_002 | 1/A/2329:2331, 1/A/2355:2357, 1/A/2366:2371 | No text annotation | homologous J3_4V9F_008 J3_61124.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_1FFZ_001 | No text annotation | ||
| J3_1FFZ_004 | No text annotation | ||
| J3_1FFZ_005 | No text annotation | ||
| J3_1FFZ_003 | No text annotation | ||
| J4_1FFZ_001 | No text annotation | ||
| J5_1FFZ_001 | No text annotation | ||
| J5_1FFZ_002 | No text annotation | ||
| J6_1FFZ_001 | No text annotation |
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