1FFZ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1FFZ_001 | homologous HL_4V9F_052 | ||
| HL_1FFZ_002 | NA | ||
| HL_1FFZ_003 | GNRA homologous HL_4V9F_054 | ||
| HL_1FFZ_004 | homologous HL_4V9F_055 | ||
| HL_1FFZ_005 | homologous HL_4V9F_056 | ||
| HL_1FFZ_006 | NA | ||
| HL_1FFZ_007 | homologous HL_4V9F_058 | ||
| HL_1FFZ_008 | homologous HL_4V9F_059 | ||
| HL_1FFZ_009 | GNRA homologous HL_4V9F_060 | ||
| HL_1FFZ_010 | homologous HL_4V9F_061 | ||
| HL_1FFZ_011 | homologous HL_4V9F_062 | ||
| HL_1FFZ_012 | homologous HL_4V9F_063 | ||
| HL_1FFZ_013 | NA | ||
| HL_1FFZ_014 | GNRA homologous HL_4V9F_065 |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/A/2491:2497, 1/A/2523:2530 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1FFZ_001 | homologous IL_4V9F_072 | ||
| IL_1FFZ_002 | homologous IL_4V9F_073 | ||
| IL_1FFZ_003 | geometric IL_5J7L_259 | ||
| IL_1FFZ_004 | Single bulged U geometric IL_4WF9_080 | ||
| IL_1FFZ_005 | Minor groove platform homologous IL_4V9F_075 | ||
| IL_1FFZ_006 | Isolated tHS basepair with bulges homologous IL_4V9F_076 | ||
| IL_1FFZ_007 | Single bulged A homologous IL_4V9F_079 | ||
| IL_1FFZ_008 | Isolated tHS basepair with bulges homologous IL_4V9F_080 | ||
| IL_1FFZ_009 | NA | ||
| IL_1FFZ_010 | Major groove platform with extra pair geometric IL_5TBW_091 | ||
| IL_1FFZ_012 | Triple sheared homologous IL_4V9F_085 | ||
| IL_1FFZ_013 | Major groove platform homologous IL_4V9F_086 | ||
| IL_1FFZ_014 | Isolated non-canonical cWW with bulges geometric IL_4V9F_087 | ||
| IL_1FFZ_015 | Multiple bulged bases homologous IL_4V9F_088 | ||
| IL_1FFZ_016 | Minor groove platform with intercalation homologous IL_4V9F_089 | ||
| IL_1FFZ_017 | Single bulged A geometric IL_7RQB_101 |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/A/2329:2331, 1/A/2355:2357, 1/A/2366:2371 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_1FFZ_001 | homologous J3_4V9F_007 | ||
| J3_1FFZ_003 | homologous J3_4V9F_009 |
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