3J2C Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3J2C_001 | 1/M/963:972 | No text annotation Not in a motif group | ||
| HL_3J2C_002 | 1/M/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_3J2C_003 | 1/M/1028:1033 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_3J2C_004 | 1/M/1075:1082 | No text annotation Not in a motif group | ||
| HL_3J2C_005 | 1/M/1089:1096 | No text annotation Not in a motif group | ||
| HL_3J2C_006 | 1/M/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
| HL_3J2C_007 | 1/M/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
| HL_3J2C_008 | 1/M/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_3J2C_009 | 1/M/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_3J2C_010 | 1/M/1356:1366 | No text annotation Not in a motif group | ||
| HL_3J2C_011 | 1/N/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_3J2C_012 | 1/N/82:87 | No text annotation Not in a motif group | ||
| HL_3J2C_013 | 1/N/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_3J2C_014 | 1/N/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_3J2C_015 | 1/N/207:212 | No text annotation Not in a motif group | ||
| HL_3J2C_016 | 1/N/258:268 | No text annotation Not in a motif group | geometric HL_6DME_003 HL_22031.1 | |
| HL_3J2C_017 | 1/N/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_3J2C_018 | 1/N/320:333 | No text annotation Not in a motif group | ||
| HL_3J2C_019 | 1/N/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_3J2C_020 | 1/N/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_3J2C_021 | 1/N/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_3J2C_022 | 1/N/460:471 | No text annotation Not in a motif group | ||
| HL_3J2C_023 | 1/N/522:527 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_3J2C_024 | 1/N/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_3J2C_025 | 1/N/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_3J2C_026 | 1/N/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_3J2C_027 | 1/N/786:796 | No text annotation Not in a motif group | ||
| HL_3J2C_028 | 1/N/840:846 | No text annotation Not in a motif group | ||
| HL_3J2C_029 | 1/N/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_3J2C_030 | 1/N/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_3J2C_032 | 1/O/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_3J2C_033 | 1/O/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3J2C_001 | 1/M/933:935, 1/M/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_3J2C_002 | 1/M/953:954, 1/M/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_3J2C_004 | 1/M/993:997, 1/M/1044:1045 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_47078.1 | |
| IL_3J2C_005 | 1/M/998:999, 1/M/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_3J2C_007 | 1/M/1006:1009, 1/M/1020:1023 | No text annotation Not in a motif group | geometric IL_4V9F_036 IL_45371.1 | |
| IL_3J2C_008 | 1/M/1009:1011, 1/M/1018:1020 | Self complementary Not in a motif group | geometric IL_2D6F_001 IL_52767.2 | |
| IL_3J2C_009 | 1/M/1048:1050, 1/M/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_3J2C_010 | 1/M/1052:1057, 1/M/1203:1206 | No text annotation Not in a motif group | ||
| IL_3J2C_011 | 1/M/1057:1058, 1/M/1199:1203 | Minor groove platform Not in a motif group | geometric IL_6CZR_155 IL_93353.1 | |
| IL_3J2C_012 | 1/M/1060:1061, 1/M/1195:1197 | Single bulged U Not in a motif group | homologous IL_6CZR_156 IL_83039.13 | |
| IL_3J2C_013 | 1/M/1121:1128, 1/M/1144:1152 | No text annotation Not in a motif group | ||
| IL_3J2C_014 | 1/M/1129:1132, 1/M/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_3J2C_015 | 1/M/1158:1163, 1/M/1173:1181 | No text annotation Not in a motif group | ||
| IL_3J2C_016 | 1/M/1241:1243, 1/M/1294:1296 | No text annotation Not in a motif group | ||
| IL_3J2C_017 | 1/M/1245:1247, 1/M/1290:1292 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_3J2C_018 | 1/M/1247:1253, 1/M/1284:1290 | No text annotation Not in a motif group | ||
| IL_3J2C_019 | 1/M/1255:1258, 1/M/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_3J2C_020 | 1/M/1259:1263, 1/M/1272:1276 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.8 | |
| IL_3J2C_022 | 1/M/1303:1308, 1/M/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_3J2C_025 | 1/N/30:32, 1/N/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_3J2C_026 | 1/N/43:45, 1/N/396:399 | CA cWW with bulged A Not in a motif group | geometric IL_4P3T_005 IL_95997.1 | |
| IL_3J2C_027 | 1/N/54:56, 1/N/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_3J2C_028 | 1/N/61:66, 1/N/103:106 | No text annotation Not in a motif group | ||
| IL_3J2C_029 | 1/N/67:69, 1/N/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_3J2C_030 | 1/N/70:73, 1/N/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_3J2C_031 | 1/N/73:82, 1/N/87:97 | No text annotation Not in a motif group | ||
| IL_3J2C_032 | 1/N/128:136, 1/N/227:233 | No text annotation Not in a motif group | ||
| IL_3J2C_034 | 1/N/144:146, 1/N/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_3J2C_035 | 1/N/147:153, 1/N/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_3J2C_036 | 1/N/200:207, 1/N/212:217 | No text annotation Not in a motif group | ||
| IL_3J2C_037 | 1/N/242:247, 1/N/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_3J2C_038 | 1/N/249:252, 1/N/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_3J2C_039 | 1/N/292:293, 1/N/304:308 | No text annotation Not in a motif group | ||
| IL_3J2C_040 | 1/N/293:295, 1/N/302:304 | No text annotation Not in a motif group | geometric IL_5C5W_002 IL_95997.1 | |
| IL_3J2C_041 | 1/N/367:369, 1/N/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_3J2C_042 | 1/N/370:375, 1/N/389:391 | No text annotation Not in a motif group | ||
| IL_3J2C_043 | 1/N/375:376, 1/N/387:389 | Single bulged G Not in a motif group | homologous IL_4LFB_016 IL_00225.2 | |
| IL_3J2C_045 | 1/N/408:416, 1/N/427:434 | No text annotation Not in a motif group | ||
| IL_3J2C_046 | 1/N/440:442, 1/N/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_3J2C_047 | 1/N/446:450, 1/N/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_3J2C_048 | 1/N/450:455, 1/N/477:483 | No text annotation Not in a motif group | ||
| IL_3J2C_050 | 1/N/458:459, 1/N/472:474 | No text annotation Not in a motif group | ||
| IL_3J2C_051 | 1/N/504:511, 1/N/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_3J2C_052 | 1/N/515:521, 1/N/528:536 | No text annotation Not in a motif group | ||
| IL_3J2C_053 | 1/N/580:584, 1/N/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_3J2C_054 | 1/N/594:596, 1/N/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_3J2C_055 | 1/N/597:598, 1/N/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_3J2C_056 | 1/N/599:601, 1/N/637:639 | Isolated cWS basepair Not in a motif group | geometric IL_5TBW_047 IL_52767.2 | |
| IL_3J2C_057 | 1/N/605:612, 1/N/628:633 | No text annotation Not in a motif group | ||
| IL_3J2C_058 | 1/N/654:655, 1/N/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.2 | |
| IL_3J2C_059 | 1/N/658:659, 1/N/746:748 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_3J2C_060 | 1/N/662:666, 1/N/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_3J2C_061 | 1/N/684:688, 1/N/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_3J2C_062 | 1/N/773:779, 1/N/803:806 | No text annotation Not in a motif group | ||
| IL_3J2C_063 | 1/N/779:783, 1/N/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_3J2C_064 | 1/N/834:837, 1/N/849:852 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.2 | |
| IL_3J2C_065 | 1/N/887:894, 1/N/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_3J2C_066 | 1/O/1399:1401, 1/O/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_3J2C_067 | 1/O/1401:1404, 1/O/1497:1501 | No text annotation Not in a motif group | ||
| IL_3J2C_068 | 1/O/1405:1409, 1/O/1491:1496 | No text annotation Not in a motif group | ||
| IL_3J2C_069 | 1/O/1412:1414, 1/O/1486:1488 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_3J2C_070 | 1/O/1416:1419, 1/O/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_3J2C_073 | 1/O/1440:1443, 1/O/1459:1461 | No text annotation Not in a motif group | ||
| IL_3J2C_074 | 1/O/1444:1448, 1/O/1455:1458 | No text annotation Not in a motif group | ||
| IL_3J2C_075 | 1/O/1511:1513, 1/O/1522:1524 | No text annotation Not in a motif group | geometric IL_2ZKO_001 IL_95997.1 | |
| IL_3J2C_076 | 1/O/1430:1439, 1/O/1462:1470 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J2C_003 | Tandem non-canonical cWW pairs | ||
| IL_3J2C_006 | No text annotation | ||
| IL_3J2C_021 | Isolated cWS basepair | ||
| IL_3J2C_023 | UU cWW | ||
| IL_3J2C_024 | Tandem non-canonical cWW pairs | ||
| IL_3J2C_033 | UU cWW | ||
| IL_3J2C_044 | No text annotation | ||
| IL_3J2C_049 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3J2C_001 | 1/M/941:947, 1/M/1234:1237, 1/M/1337:1342 | No text annotation Not in a motif group | ||
| J3_3J2C_002 | 1/M/954:962, 1/M/973:985, 1/M/1220:1226 | No text annotation Not in a motif group | ||
| J3_3J2C_003 | 1/M/990:993, 1/M/1045:1047, 1/M/1210:1215 | No text annotation Not in a motif group | ||
| J3_3J2C_004 | 1/M/1003:1006, 1/M/1023:1028, 1/M/1033:1037 | No text annotation Not in a motif group | ||
| J3_3J2C_005 | 1/M/1116:1118, 1/M/1155:1158, 1/M/1181:1184 | No text annotation Not in a motif group | ||
| J3_3J2C_006 | 1/M/1237:1241, 1/M/1296:1303, 1/M/1334:1337 | No text annotation Not in a motif group | ||
| J3_3J2C_007 | 1/N/46:52, 1/N/359:367, 1/N/393:395 | No text annotation Not in a motif group | ||
| J3_3J2C_008 | 1/N/826:829, 1/N/857:861, 1/N/868:874 | No text annotation Not in a motif group | ||
| J3_3J2C_009 | 1/M/1073:1074, 1/M/1083:1087, 1/M/1098:1102 | No text annotation Not in a motif group | ||
| J3_3J2C_010 | 1/N/586:588, 1/N/651:654, 1/N/754:755 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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