6W7W Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6W7W_001 | 1/2/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_6W7W_002 | 1/2/83:86 | No text annotation Not in a motif group | geometric HL_5TBW_071 HL_53837.1 | |
| HL_6W7W_003 | 1/2/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_6W7W_004 | 1/2/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_6W7W_005 | 1/2/206:213 | No text annotation Not in a motif group | ||
| HL_6W7W_006 | 1/2/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_6W7W_007 | 1/2/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_6W7W_008 | 1/2/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_6W7W_009 | 1/2/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_6W7W_010 | 1/2/379:384 | GNRA Not in a motif group | homologous HL_6CZR_081 HL_42097.1 | |
| HL_6W7W_011 | 1/2/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_6W7W_012 | 1/2/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
| HL_6W7W_013 | 1/2/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6W7W_014 | 1/2/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_6W7W_016 | 1/2/726:731 | Other HL Not in a motif group | homologous HL_6CZR_087 HL_87030.2 | |
| HL_6W7W_017 | 1/2/840:846 | No text annotation Not in a motif group | ||
| HL_6W7W_018 | 1/2/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_6W7W_019 | 1/2/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6W7W_015 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6W7W_001 | 1/2/30:32, 1/2/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
| IL_6W7W_002 | 1/2/44:45, 1/2/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_6W7W_003 | 1/2/47:52, 1/2/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_6W7W_004 | 1/2/54:56, 1/2/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_6W7W_005 | 1/2/63:66, 1/2/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_6W7W_006 | 1/2/67:69, 1/2/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_6W7W_007 | 1/2/70:73, 1/2/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_6W7W_008 | 1/2/75:76, 1/2/93:95 | Single bulged G Not in a motif group | geometric IL_5DEA_002 IL_00225.2 | |
| IL_6W7W_009 | 1/2/128:131, 1/2/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
| IL_6W7W_010 | 1/2/132:136, 1/2/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_6W7W_011 | 1/2/144:146, 1/2/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_6W7W_012 | 1/2/147:153, 1/2/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_6W7W_013 | 1/2/203:206, 1/2/213:214 | Minor groove platform Not in a motif group | geometric IL_5J7L_007 IL_15052.1 | |
| IL_6W7W_014 | 1/2/242:247, 1/2/277:284 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_4V88_402 IL_45067.2 | |
| IL_6W7W_015 | 1/2/249:252, 1/2/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_6W7W_016 | 1/2/292:293, 1/2/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_6W7W_017 | 1/2/367:369, 1/2/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_6W7W_018 | 1/2/371:375, 1/2/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6W7W_019 | 1/2/375:376, 1/2/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_6W7W_020 | 1/2/409:416, 1/2/427:433 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
| IL_6W7W_021 | 1/2/440:442, 1/2/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_6W7W_022 | 1/2/446:450, 1/2/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
| IL_6W7W_023 | 1/2/450:454, 1/2/479:483 | No text annotation Not in a motif group | ||
| IL_6W7W_024 | 1/2/454:455, 1/2/477:479 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6W7W_025 | 1/2/504:511, 1/2/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_6W7W_026 | 1/2/515:521, 1/2/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6W7W_027 | 1/2/569:575, 1/2/880:881 | No text annotation Not in a motif group | homologous IL_6CZR_134 IL_69996.1 | |
| IL_6W7W_028 | 1/2/580:584, 1/2/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_6W7W_029 | 1/2/594:596, 1/2/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_6W7W_030 | 1/2/597:598, 1/2/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_6W7W_031 | 1/2/605:613, 1/2/627:633 | No text annotation Not in a motif group | ||
| IL_6W7W_032 | 1/2/654:655, 1/2/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_6W7W_033 | 1/2/658:659, 1/2/746:748 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_6W7W_034 | 1/2/662:666, 1/2/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_6W7W_035 | 1/2/773:775, 1/2/805:806 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6W7W_036 | 1/2/775:779, 1/2/803:805 | No text annotation Not in a motif group | ||
| IL_6W7W_037 | 1/2/779:783, 1/2/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_145 IL_17136.1 | |
| IL_6W7W_038 | 1/2/887:895, 1/2/904:910 | 9x7 Sarcin-Ricin with inserted C; G-bulge Not in a motif group | homologous IL_6CZR_146 IL_68633.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6W7W_001 | 1/2/46:47, 1/2/361:367, 1/2/393:395 | No text annotation Not in a motif group | ||
| J3_6W7W_002 | 1/2/586:588, 1/2/651:654, 1/2/754:755 | No text annotation Not in a motif group | ||
| J3_6W7W_003 | 1/2/672:673, 1/2/717:725, 1/2/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_6W7W_004 | 1/2/826:829, 1/2/857:861, 1/2/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA |
Problematic loops
No problematic loops
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