7BGE Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7BGE_001 | No text annotation | ||
| HL_7BGE_002 | GNRA | ||
| HL_7BGE_003 | No text annotation | ||
| HL_7BGE_004 | GNRA | ||
| HL_7BGE_005 | No text annotation | ||
| HL_7BGE_006 | No text annotation | ||
| HL_7BGE_007 | GNRA | ||
| HL_7BGE_008 | GNRA | ||
| HL_7BGE_009 | No text annotation | ||
| HL_7BGE_010 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7BGE_001 | 1/a/939:941, 1/a/1398:1399 | Single stack bend Not in a motif group | geometric IL_5TBW_009 IL_76488.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7BGE_002 | No text annotation | ||
| IL_7BGE_003 | Minor groove platform | ||
| IL_7BGE_004 | Minor groove platform | ||
| IL_7BGE_005 | Major groove platform | ||
| IL_7BGE_006 | Single stack bend | ||
| IL_7BGE_007 | Minor groove platform | ||
| IL_7BGE_008 | Single bulged U | ||
| IL_7BGE_009 | Tandem non-canonical cWW pairs | ||
| IL_7BGE_010 | Minor groove platform | ||
| IL_7BGE_011 | Single bulged A | ||
| IL_7BGE_012 | No text annotation | ||
| IL_7BGE_013 | Minor groove platform | ||
| IL_7BGE_014 | No text annotation | ||
| IL_7BGE_015 | No text annotation | ||
| IL_7BGE_016 | No text annotation | ||
| IL_7BGE_017 | No text annotation | ||
| IL_7BGE_018 | Triple sheared | ||
| IL_7BGE_019 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7BGE_001 | No text annotation | ||
| J3_7BGE_002 | No text annotation | ||
| J3_7BGE_003 | No text annotation | ||
| J3_7BGE_004 | No text annotation | ||
| J3_7BGE_005 | No text annotation | ||
| J3_7BGE_006 | No text annotation | ||
| J3_7BGE_007 | No text annotation | ||
| J3_7BGE_008 | No text annotation | ||
| J3_7BGE_009 | No text annotation |
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