RNA 3D Hub //

7PO2 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7PO2_0011/5/13:22tRNA D-loop
geometric
HL_4TUE_033
NA
HL_7PO2_0021/5/31:39tRNA anticodon loop
geometric
HL_4TUE_034
NA
HL_7PO2_0041/A/654:664No text annotation
homologous
HL_4LFB_001
HL_73535.1
HL_7PO2_0051/A/701:708No text annotation
HL_7PO2_0061/A/734:740Mini UNCG
geometric
HL_4L8H_001
HL_90436.3
HL_7PO2_0071/A/768:773GNRA
geometric
HL_5FJC_002
HL_34789.4
HL_7PO2_0081/A/792:796No text annotation
geometric
HL_5TBW_004
NA
HL_7PO2_0091/A/804:809No text annotation
HL_7PO2_0101/A/842:847GNRA
homologous
HL_4LFB_010
HL_34789.4
HL_7PO2_0111/A/894:899GNRA
geometric
HL_4OQU_004
HL_34789.4
HL_7PO2_0121/A/989:998No text annotation
geometric
HL_4LFB_015
HL_38491.2
HL_7PO2_0131/A/1023:1028GNRA
geometric
HL_5J7L_016
NA
HL_7PO2_0141/A/1074:1084No text annotation
homologous
HL_5J7L_017
NA
HL_7PO2_0151/A/1115:1126No text annotation
HL_7PO2_0161/A/1150:1155Mini UNCG
geometric
HL_6TQB_001
HL_12626.2
HL_7PO2_0171/A/1217:1226No text annotation
homologous
HL_5J7L_021
NA
HL_7PO2_0181/A/1281:1287No text annotation
geometric
HL_5U3G_001
HL_75660.8
HL_7PO2_0191/A/1310:1315No text annotation
HL_7PO2_0201/A/1373:1379No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_7PO2_0211/A/1399:1407T-loop with 2 bulged bases not stacked
geometric
HL_3F2X_001
HL_13999.3
HL_7PO2_0221/A/1440:1450No text annotation
homologous
HL_5J7L_029
NA
HL_7PO2_0231/A/1522:1528No text annotation
geometric
HL_5M3H_001
NA
HL_7PO2_0241/A/1580:1585GNRA
homologous
HL_4LFB_032
HL_34789.4

Problematic loops

#loop idProblemSequence
HL_7PO2_003T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7PO2_0031/A/649:651,
1/A/667:668		No text annotation
IL_7PO2_0041/A/674:676,
1/A/921:923		Isolated tHS basepair with bulges
geometric
IL_1L9A_004
NA
IL_7PO2_0051/A/685:686,
1/A/859:861		Single bulged A
homologous
IL_5J7L_002
NA
IL_7PO2_0061/A/690:692,
1/A/822:823		Single bulged A
geometric
IL_4R4V_004
IL_14190.2
IL_7PO2_0071/A/694:696,
1/A/819:820		Minor groove platform
homologous
IL_4LFB_004
IL_34520.3
IL_7PO2_0081/A/727:729,
1/A/744:747		Minor groove platform with extra cWW
geometric
IL_7RQB_031
NA
IL_7PO2_0091/A/729:732,
1/A/742:744		Minor groove platform with extra cWW
geometric
IL_7RQB_031
NA
IL_7PO2_0101/A/756:761,
1/A/779:786		Kink-turn with non-sequential stacking
geometric
IL_4LFB_011
IL_46174.4
IL_7PO2_0111/A/762:765,
1/A/777:778		Major groove platform; stack outside cWW
geometric
IL_1NTA_003
IL_74641.2
IL_7PO2_0491/A/762:766,
1/A/775:778		No text annotation
IL_7PO2_0121/A/765:766,
1/A/775:777		No text annotation
IL_7PO2_0131/A/830:832,
1/A/855:856		Single bulged U
homologous
IL_5J7L_017
NA
IL_7PO2_0141/A/834:838,
1/A/852:853		C-loop
homologous
IL_5J7L_018
NA
IL_7PO2_0151/A/838:839,
1/A/850:852		Single bulged A
geometric
IL_2QUX_002
IL_14190.2
IL_7PO2_0161/A/876:885,
1/A/910:913		No text annotation
IL_7PO2_0171/A/887:893,
1/A/900:908		Kink-turn related
geometric
IL_4V88_415
NA
IL_7PO2_0181/A/935:941,
1/A/1133:1134		No text annotation
homologous
IL_5J7L_026
NA
IL_7PO2_0191/A/946:950,
1/A/1044:1049		No text annotation
IL_7PO2_0501/A/952:968,
1/A/1036:1042		No text annotation
IL_7PO2_0201/A/974:980,
1/A/1008:1014		No text annotation
IL_7PO2_0211/A/982:984,
1/A/1004:1006		Isolated non-canonical cWW pair
geometric
IL_4LFB_010
IL_01003.4
IL_7PO2_0221/A/986:988,
1/A/999:1002		No text annotation
IL_7PO2_0231/A/1020:1022,
1/A/1029:1030		Other IL
geometric
IL_3WBM_004
IL_18188.1
IL_7PO2_0241/A/1062:1066,
1/A/1092:1093		Left turn
homologous
IL_5J7L_036
NA
IL_7PO2_0251/A/1067:1071,
1/A/1087:1091		tSH-tHW-tHS
homologous
IL_5J7L_037
NA
IL_7PO2_0261/A/1109:1111,
1/A/1130:1132		Isolated non-canonical cWW pair
geometric
IL_1Z7F_002
NA
IL_7PO2_0271/A/1139:1147,
1/A/1158:1164		No text annotation
IL_7PO2_0281/A/1175:1176,
1/A/1477:1479		Single bulged A
homologous
IL_4LFB_035
IL_14190.2
IL_7PO2_0291/A/1178:1180,
1/A/1474:1475		Single bulged G
homologous
IL_6CZR_148
NA
IL_7PO2_0301/A/1186:1190,
1/A/1464:1468		C-loop
geometric
IL_4V88_443
NA
IL_7PO2_0311/A/1208:1209,
1/A/1355:1357		Minor groove platform
homologous
IL_4LFB_038
IL_34520.3
IL_7PO2_0321/A/1244:1252,
1/A/1340:1345		No text annotation
IL_7PO2_0331/A/1253:1255,
1/A/1338:1339		Single bulged U
homologous
IL_4LFB_042
IL_97561.5
IL_7PO2_0341/A/1257:1261,
1/A/1334:1336		Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_7PO2_0351/A/1262:1263,
1/A/1329:1333		Minor groove platform
homologous
IL_6CZR_155
NA
IL_7PO2_0361/A/1265:1266,
1/A/1325:1327		Single bulged A
geometric
IL_5J7L_049
NA
IL_7PO2_0371/A/1266:1268,
1/A/1323:1325		Isolated non-canonical cWW pair
homologous
IL_5J7L_050
NA
IL_7PO2_0381/A/1274:1277,
1/A/1298:1301		Double sheared
geometric
IL_5AOX_003
IL_58355.2
IL_7PO2_0391/A/1278:1279,
1/A/1289:1297		No text annotation
geometric
IL_8S95_001
IL_25652.1
IL_7PO2_0401/A/1388:1393,
1/A/1413:1418		No text annotation
IL_7PO2_0411/A/1483:1485,
1/A/1566:1569		No text annotation
homologous
IL_5J7L_058
NA
IL_7PO2_0511/A/1485:1488,
1/A/1562:1566		No text annotation
homologous
IL_5J7L_059
NA
IL_7PO2_0431/A/1489:1491,
1/A/1559:1561		Isolated non-canonical cWW pair
geometric
IL_4E48_006
IL_01003.4
IL_7PO2_0441/A/1491:1495,
1/A/1554:1559		No text annotation
IL_7PO2_0451/A/1500:1503,
1/A/1547:1549		No text annotation
geometric
IL_4PDQ_003
IL_41344.1
IL_7PO2_0461/A/1507:1510,
1/A/1540:1543		Tandem non-canonical cWW pairs
geometric
IL_5TBW_128
NA
IL_7PO2_0471/A/1510:1511,
1/A/1538:1540		Single bulged C
geometric
IL_5J7L_311
NA
IL_7PO2_0481/A/1511:1514,
1/A/1535:1538		No text annotation
IL_7PO2_0531/A/1516:1521,
1/A/1529:1533		No text annotation

Problematic loops

#loop idProblemSequence
IL_7PO2_001Isolated non-canonical cWW pair
IL_7PO2_002Tandem non-canonical cWW pairs
IL_7PO2_042No text annotation
IL_7PO2_052No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7PO2_0011/A/677:680,
1/A/866:872,
1/A/917:920		No text annotation
J3_7PO2_0021/A/687:690,
1/A/823:830,
1/A/856:858		No text annotation
J3_7PO2_0031/A/973:974,
1/A/1014:1020,
1/A/1030:1031		No text annotation
J3_7PO2_0041/A/1192:1194,
1/A/1428:1434,
1/A/1456:1462		No text annotation
J3_7PO2_0051/A/1198:1201,
1/A/1364:1366,
1/A/1421:1424		No text annotation
homologous
J3_5J7L_005
NA
J3_7PO2_0061/A/1210:1216,
1/A/1227:1238,
1/A/1351:1354		No text annotation
J3_7PO2_0091/A/1268:1273,
1/A/1302:1308,
1/A/1317:1323		No text annotation
homologous
J3_4LFB_007
J3_01343.1
J3_7PO2_0101/A/1366:1370,
1/A/1382:1388,
1/A/1418:1421		No text annotation
J4_7PO2_0051/5/7:10,
1/5/25:27,
1/5/43:49,
1/5/65:66		No text annotation
J4_7PO2_0021/A/698:701,
1/A/708:715,
1/A/800:802,
1/A/811:817		No text annotation
J4_7PO2_0031/A/717:724,
1/A/750:753,
1/A/789:791,
1/A/797:798		No text annotation
J4_7PO2_0041/A/941:943,
1/A/1052:1057,
1/A/1098:1109,
1/A/1132:1133		No text annotation
homologous
J4_5J7L_003
NA

Problematic loops

#loop idProblemSequence
J3_7PO2_007No text annotation
J3_7PO2_008No text annotation
J4_7PO2_001No text annotation

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