4V75 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_4V75_001 | 1/A1/13:22 | No text annotation Not in a motif group | homologous HL_6JXM_001 HL_25462.2 | |
HL_4V75_002 | 1/A1/31:39 | No text annotation Not in a motif group | ||
HL_4V75_003 | 1/A1/53:61 | No text annotation Not in a motif group | homologous HL_1H4S_003 NA | |
HL_4V75_004 | 1/A3/13:23 | No text annotation Not in a motif group | homologous HL_3WFS_001 NA | |
HL_4V75_005 | 1/A3/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_6UFG_007 HL_53597.2 | |
HL_4V75_006 | 1/A3/54:62 | No text annotation Not in a motif group | homologous HL_1IL2_003 NA | |
HL_4V75_007 | 1/AA/12:22 | No text annotation Not in a motif group | ||
HL_4V75_008 | 1/AA/82:87 | No text annotation Not in a motif group | ||
HL_4V75_009 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
HL_4V75_010 | 1/AA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
HL_4V75_011 | 1/AA/207:212 | No text annotation Not in a motif group | ||
HL_4V75_012 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
HL_4V75_013 | 1/AA/294:303 | No text annotation Not in a motif group | ||
HL_4V75_014 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_6CZR_079 HL_81205.2 | |
HL_4V75_015 | 1/AA/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_03562.2 | |
HL_4V75_016 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
HL_4V75_017 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
HL_4V75_018 | 1/AA/462:470 | No text annotation Not in a motif group | ||
HL_4V75_019 | 1/AA/522:527 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
HL_4V75_020 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
HL_4V75_021 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
HL_4V75_022 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
HL_4V75_023 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
HL_4V75_024 | 1/AA/840:846 | No text annotation Not in a motif group | geometric HL_4V9F_011 HL_75407.1 | |
HL_4V75_025 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
HL_4V75_026 | 1/AA/897:902 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
HL_4V75_027 | 1/AA/962:973 | No text annotation Not in a motif group | geometric HL_5E6M_002 HL_34168.2 | |
HL_4V75_028 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
HL_4V75_029 | 1/AA/1027:1034 | No text annotation Not in a motif group | ||
HL_4V75_030 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
HL_4V75_031 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
HL_4V75_032 | 1/AA/1134:1140 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_03562.2 | |
HL_4V75_033 | 1/AA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
HL_4V75_034 | 1/AA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
HL_4V75_035 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
HL_4V75_036 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
HL_4V75_037 | 1/AA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
HL_4V75_038 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
HL_4V75_039 | 1/BA/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
HL_4V75_040 | 1/BA/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
HL_4V75_041 | 1/BA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
HL_4V75_042 | 1/BA/137:142 | No text annotation Not in a motif group | ||
HL_4V75_043 | 1/BA/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
HL_4V75_044 | 1/BA/194:201 | No text annotation Not in a motif group | geometric HL_7A0S_006 HL_06192.2 | |
HL_4V75_045 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
HL_4V75_046 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
HL_4V75_047 | 1/BA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
HL_4V75_048 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_4WF9_011 HL_75407.1 | |
HL_4V75_049 | 1/BA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
HL_4V75_050 | 1/BA/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
HL_4V75_051 | 1/BA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
HL_4V75_052 | 1/BA/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
HL_4V75_053 | 1/BA/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
HL_4V75_054 | 1/BA/544:549 | No text annotation Not in a motif group | ||
HL_4V75_055 | 1/BA/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5UD5_003 HL_22280.1 | |
HL_4V75_056 | 1/BA/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
HL_4V75_057 | 1/BA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
HL_4V75_058 | 1/BA/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
HL_4V75_059 | 1/BA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
HL_4V75_060 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.6 | |
HL_4V75_061 | 1/BA/779:785 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
HL_4V75_062 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
HL_4V75_064 | 1/BA/955:962 | No text annotation Not in a motif group | homologous HL_7A0S_026 HL_42097.1 | |
HL_4V75_065 | 1/BA/978:985 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
HL_4V75_066 | 1/BA/1064:1074 | No text annotation Not in a motif group | geometric HL_6D12_001 HL_75407.1 | |
HL_4V75_067 | 1/BA/1092:1099 | No text annotation Not in a motif group | homologous HL_7RQB_030 NA | |
HL_4V75_068 | 1/BA/1172:1177 | No text annotation Not in a motif group | geometric HL_5TBW_018 HL_34168.2 | |
HL_4V75_069 | 1/BA/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
HL_4V75_070 | 1/BA/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
HL_4V75_071 | 1/BA/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
HL_4V75_072 | 1/BA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
HL_4V75_073 | 1/BA/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
HL_4V75_074 | 1/BA/1450:1461 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
HL_4V75_075 | 1/BA/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
HL_4V75_076 | 1/BA/1533:1538 | No text annotation Not in a motif group | ||
HL_4V75_077 | 1/BA/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
HL_4V75_078 | 1/BA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
HL_4V75_079 | 1/BA/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
HL_4V75_080 | 1/BA/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
HL_4V75_081 | 1/BA/1728:1731 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
HL_4V75_082 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
HL_4V75_083 | 1/BA/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
HL_4V75_084 | 1/BA/1806:1811 | No text annotation Not in a motif group | homologous HL_4WF9_044 NA | |
HL_4V75_085 | 1/BA/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_42097.1 | |
HL_4V75_086 | 1/BA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
HL_4V75_087 | 1/BA/1949:1957 | No text annotation Not in a motif group | homologous HL_4WF9_046 HL_51824.1 | |
HL_4V75_088 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
HL_4V75_089 | 1/BA/2143:2148 | UNCG Not in a motif group | homologous HL_3U4M_001 HL_03562.2 | |
HL_4V75_090 | 1/BA/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
HL_4V75_091 | 1/BA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
HL_4V75_092 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
HL_4V75_093 | 1/BA/2303:2313 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
HL_4V75_094 | 1/BA/2323:2332 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
HL_4V75_095 | 1/BA/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
HL_4V75_096 | 1/BA/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
HL_4V75_097 | 1/BA/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
HL_4V75_098 | 1/BA/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
HL_4V75_099 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
HL_4V75_100 | 1/BA/2550:2558 | No text annotation Not in a motif group | ||
HL_4V75_101 | 1/BA/2594:2599 | GNRA Not in a motif group | homologous HL_4WF9_059 HL_42097.1 | |
HL_4V75_102 | 1/BA/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
HL_4V75_103 | 1/BA/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_7A0S_064 HL_46680.1 | |
HL_4V75_104 | 1/BA/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
HL_4V75_105 | 1/BA/2796:2800 | No text annotation Not in a motif group | geometric HL_7A0S_039 HL_38927.2 | |
HL_4V75_106 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
HL_4V75_107 | 1/BA/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 | |
HL_4V75_108 | 1/BB/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
HL_4V75_109 | 1/BB/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4V75_063 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_4V75_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
IL_4V75_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
IL_4V75_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
IL_4V75_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
IL_4V75_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
IL_4V75_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
IL_4V75_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
IL_4V75_008 | 1/AA/75:76, 1/AA/93:95 | Single bulged G Not in a motif group | geometric IL_7A0S_099 IL_00225.2 | |
IL_4V75_009 | 1/AA/128:136, 1/AA/227:233 | No text annotation Not in a motif group | ||
IL_4V75_010 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
IL_4V75_011 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
IL_4V75_012 | 1/AA/203:206, 1/AA/213:214 | No text annotation Not in a motif group | ||
IL_4V75_013 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
IL_4V75_014 | 1/AA/249:253, 1/AA/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
IL_4V75_015 | 1/AA/291:293, 1/AA/304:309 | No text annotation Not in a motif group | ||
IL_4V75_016 | 1/AA/367:370, 1/AA/391:393 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_52767.2 | |
IL_4V75_017 | 1/AA/371:376, 1/AA/387:390 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
IL_4V75_018 | 1/AA/409:418, 1/AA/425:433 | No text annotation Not in a motif group | ||
IL_4V75_019 | 1/AA/440:442, 1/AA/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
IL_4V75_020 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
IL_4V75_021 | 1/AA/450:455, 1/AA/477:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
IL_4V75_022 | 1/AA/458:460, 1/AA/471:474 | No text annotation Not in a motif group | ||
IL_4V75_023 | 1/AA/460:462, 1/AA/470:471 | No text annotation Not in a motif group | ||
IL_4V75_024 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
IL_4V75_025 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
IL_4V75_026 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
IL_4V75_027 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.1 | |
IL_4V75_028 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | geometric IL_4V9F_082 IL_27635.1 | |
IL_4V75_029 | 1/AA/596:598, 1/AA/640:644 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_012 IL_92788.2 | |
IL_4V75_030 | 1/AA/605:612, 1/AA/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
IL_4V75_031 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.2 | |
IL_4V75_032 | 1/AA/659:660, 1/AA/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
IL_4V75_033 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
IL_4V75_034 | 1/AA/673:678, 1/AA/712:717 | No text annotation Not in a motif group | homologous IL_6CZR_142 IL_04668.1 | |
IL_4V75_035 | 1/AA/684:688, 1/AA/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
IL_4V75_036 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
IL_4V75_037 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
IL_4V75_038 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
IL_4V75_039 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
IL_4V75_040 | 1/AA/924:927, 1/AA/1390:1392 | No text annotation Not in a motif group | geometric IL_1XJR_003 IL_10023.1 | |
IL_4V75_041 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
IL_4V75_042 | 1/AA/953:954, 1/AA/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
IL_4V75_043 | 1/AA/993:997, 1/AA/1044:1045 | No text annotation Not in a motif group | ||
IL_4V75_044 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
IL_4V75_045 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U Not in a motif group | geometric IL_4FRG_002 IL_83039.13 | |
IL_4V75_046 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
IL_4V75_047 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
IL_4V75_048 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
IL_4V75_049 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | ||
IL_4V75_050 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
IL_4V75_051 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
IL_4V75_052 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
IL_4V75_053 | 1/AA/1246:1253, 1/AA/1284:1291 | No text annotation Not in a motif group | ||
IL_4V75_054 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | ||
IL_4V75_055 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
IL_4V75_056 | 1/AA/1303:1309, 1/AA/1328:1334 | No text annotation Not in a motif group | ||
IL_4V75_057 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
IL_4V75_058 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
IL_4V75_059 | 1/AA/1405:1407, 1/AA/1494:1496 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
IL_4V75_060 | 1/AA/1407:1409, 1/AA/1491:1494 | No text annotation Not in a motif group | ||
IL_4V75_061 | 1/AA/1412:1414, 1/AA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
IL_4V75_062 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
IL_4V75_063 | 1/AA/1429:1435, 1/AA/1466:1471 | No text annotation Not in a motif group | ||
IL_4V75_064 | 1/AA/1439:1442, 1/AA/1460:1462 | No text annotation Not in a motif group | ||
IL_4V75_065 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation Not in a motif group | ||
IL_4V75_066 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7A0S_001 IL_66414.6 | |
IL_4V75_067 | 1/BA/36:37, 1/BA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
IL_4V75_068 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
IL_4V75_069 | 1/BA/75:76, 1/BA/110:112 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
IL_4V75_070 | 1/BA/81:85, 1/BA/97:105 | No text annotation Not in a motif group | ||
IL_4V75_071 | 1/BA/183:184, 1/BA/212:214 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_76488.2 | |
IL_4V75_072 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
IL_4V75_073 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
IL_4V75_074 | 1/BA/269:271, 1/BA/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
IL_4V75_075 | 1/BA/274:281, 1/BA/359:363 | No text annotation Not in a motif group | ||
IL_4V75_076 | 1/BA/293:295, 1/BA/343:347 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
IL_4V75_077 | 1/BA/481:484, 1/BA/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
IL_4V75_078 | 1/BA/536:539, 1/BA/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
IL_4V75_079 | 1/BA/564:566, 1/BA/575:577 | No text annotation Not in a motif group | homologous IL_4WF9_017 IL_95997.1 | |
IL_4V75_080 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
IL_4V75_081 | 1/BA/672:674, 1/BA/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
IL_4V75_082 | 1/BA/674:678, 1/BA/799:806 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
IL_4V75_083 | 1/BA/697:698, 1/BA/763:765 | Single bulged A Not in a motif group | homologous IL_4WF9_022 IL_37497.2 | |
IL_4V75_084 | 1/BA/702:707, 1/BA/724:730 | Quadruple sheared Not in a motif group | geometric IL_5LR3_002 IL_06136.1 | |
IL_4V75_085 | 1/BA/738:740, 1/BA/757:758 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
IL_4V75_086 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
IL_4V75_087 | 1/BA/843:848, 1/BA/930:935 | No text annotation Not in a motif group | ||
IL_4V75_088 | 1/BA/850:851, 1/BA/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
IL_4V75_089 | 1/BA/856:862, 1/BA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
IL_4V75_090 | 1/BA/862:863, 1/BA/913:915 | No text annotation Not in a motif group | ||
IL_4V75_091 | 1/BA/864:868, 1/BA/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
IL_4V75_092 | 1/BA/869:872, 1/BA/905:908 | No text annotation Not in a motif group | geometric IL_4V9F_036 IL_45371.1 | |
IL_4V75_093 | 1/BA/875:879, 1/BA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
IL_4V75_094 | 1/BA/880:881, 1/BA/895:897 | No text annotation Not in a motif group | ||
IL_4V75_095 | 1/BA/994:996, 1/BA/1159:1160 | No text annotation Not in a motif group | ||
IL_4V75_096 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
IL_4V75_097 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
IL_4V75_098 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U Not in a motif group | homologous IL_4WF9_038 IL_83039.13 | |
IL_4V75_099 | 1/BA/1018:1024, 1/BA/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
IL_4V75_100 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
IL_4V75_101 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
IL_4V75_102 | 1/BA/1038:1041, 1/BA/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
IL_4V75_104 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation Not in a motif group | homologous IL_5J7L_285 IL_23544.2 | |
IL_4V75_105 | 1/BA/1087:1091, 1/BA/1100:1102 | No text annotation Not in a motif group | ||
IL_4V75_106 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
IL_4V75_107 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
IL_4V75_108 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_70923.2 | |
IL_4V75_109 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
IL_4V75_110 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7A0S_046 IL_50694.2 | |
IL_4V75_111 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
IL_4V75_112 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
IL_4V75_113 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_4WF9_052 IL_17136.1 | |
IL_4V75_114 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
IL_4V75_115 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
IL_4V75_116 | 1/BA/1432:1435, 1/BA/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
IL_4V75_117 | 1/BA/1437:1440, 1/BA/1551:1555 | No text annotation Not in a motif group | ||
IL_4V75_118 | 1/BA/1467:1471, 1/BA/1520:1525 | No text annotation Not in a motif group | geometric IL_5TBW_071 IL_69313.1 | |
IL_4V75_119 | 1/BA/1474:1478, 1/BA/1513:1517 | No text annotation Not in a motif group | ||
IL_4V75_120 | 1/BA/1480:1482, 1/BA/1507:1511 | No text annotation Not in a motif group | homologous IL_4WF9_060 NA | |
IL_4V75_121 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A Not in a motif group | geometric IL_4V88_409 IL_37497.2 | |
IL_4V75_122 | 1/BA/1526:1529, 1/BA/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
IL_4V75_123 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
IL_4V75_124 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
IL_4V75_125 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7A0S_061 IL_50694.2 | |
IL_4V75_126 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_4WF9_065 IL_82842.2 | |
IL_4V75_127 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
IL_4V75_128 | 1/BA/1712:1718, 1/BA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
IL_4V75_129 | 1/BA/1720:1724, 1/BA/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
IL_4V75_130 | 1/BA/1727:1728, 1/BA/1731:1733 | Single bulged C Not in a motif group | homologous IL_5J7L_311 IL_61258.12 | |
IL_4V75_131 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
IL_4V75_132 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
IL_4V75_133 | 1/BA/1837:1840, 1/BA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
IL_4V75_134 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_69996.1 | |
IL_4V75_135 | 1/BA/1846:1849, 1/BA/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
IL_4V75_136 | 1/BA/1864:1867, 1/BA/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
IL_4V75_137 | 1/BA/1933:1934, 1/BA/1964:1967 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1NBS_009 IL_69996.1 | |
IL_4V75_138 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
IL_4V75_139 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
IL_4V75_140 | 1/BA/2054:2056, 1/BA/2612:2615 | No text annotation Not in a motif group | ||
IL_4V75_141 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
IL_4V75_142 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
IL_4V75_143 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
IL_4V75_144 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
IL_4V75_145 | 1/BA/2101:2103, 1/BA/2186:2188 | Isolated cWS basepair Not in a motif group | geometric IL_4TS2_003 IL_52767.2 | |
IL_4V75_146 | 1/BA/2103:2106, 1/BA/2183:2186 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
IL_4V75_147 | 1/BA/2107:2110, 1/BA/2179:2182 | No text annotation Not in a motif group | ||
IL_4V75_152 | 1/BA/2202:2204, 1/BA/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
IL_4V75_153 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
IL_4V75_154 | 1/BA/2401:2403, 1/BA/2414:2415 | No text annotation Not in a motif group | ||
IL_4V75_155 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
IL_4V75_156 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
IL_4V75_157 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_92788.2 | |
IL_4V75_158 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
IL_4V75_159 | 1/BA/2507:2509, 1/BA/2579:2582 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
IL_4V75_160 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7A0S_089 IL_90933.2 | |
IL_4V75_161 | 1/BA/2512:2513, 1/BA/2571:2574 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
IL_4V75_162 | 1/BA/2522:2523, 1/BA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
IL_4V75_163 | 1/BA/2525:2527, 1/BA/2536:2538 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_52767.2 | |
IL_4V75_164 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
IL_4V75_165 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
IL_4V75_166 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_5J7L_346 IL_16458.1 | |
IL_4V75_167 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
IL_4V75_168 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
IL_4V75_169 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
IL_4V75_170 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_4WF9_104 IL_49767.5 | |
IL_4V75_171 | 1/BA/2806:2811, 1/BA/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
IL_4V75_172 | 1/BA/2838:2839, 1/BA/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_16396.2 | |
IL_4V75_173 | 1/BA/2843:2846, 1/BA/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
IL_4V75_174 | 1/BA/2847:2853, 1/BA/2864:2869 | No text annotation Not in a motif group | ||
IL_4V75_175 | 1/BB/17:19, 1/BB/64:67 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
IL_4V75_176 | 1/BB/23:28, 1/BB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
IL_4V75_177 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_103 IL_09061.6 | |
IL_4V75_178 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5J7L_358 IL_58103.6 | |
IL_4V75_179 | 1/BB/71:79, 1/BB/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4V75_103 | Kink-turn | ||
IL_4V75_148 | Multiple bulged bases | ||
IL_4V75_149 | Isolated cWH basepair | ||
IL_4V75_150 | No text annotation | ||
IL_4V75_151 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4V75_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation Not in a motif group | ||
J3_4V75_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation Not in a motif group | ||
J3_4V75_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation Not in a motif group | ||
J3_4V75_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
J3_4V75_005 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
J3_4V75_006 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation Not in a motif group | ||
J3_4V75_007 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | homologous J3_5J7L_007 NA | |
J3_4V75_008 | 1/AA/1003:1007, 1/AA/1022:1027, 1/AA/1034:1037 | No text annotation Not in a motif group | ||
J3_4V75_009 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation Not in a motif group | ||
J3_4V75_010 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
J3_4V75_011 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
J3_4V75_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | ||
J3_4V75_013 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation Not in a motif group | ||
J3_4V75_014 | 1/BA/56:57, 1/BA/70:75, 1/BA/112:114 | No text annotation Not in a motif group | ||
J3_4V75_015 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation Not in a motif group | ||
J3_4V75_016 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation Not in a motif group | ||
J3_4V75_017 | 1/BA/1055:1057, 1/BA/1081:1087, 1/BA/1102:1104 | No text annotation Not in a motif group | homologous J3_6PRV_001 NA | |
J3_4V75_018 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
J3_4V75_019 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation Not in a motif group | homologous J3_5J7L_042 NA | |
J3_4V75_020 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation Not in a motif group | ||
J3_4V75_021 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
J3_4V75_022 | 1/BA/2295:2299, 1/BA/2317:2323, 1/BA/2332:2337 | No text annotation Not in a motif group | ||
J3_4V75_023 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation Not in a motif group | ||
J3_4V75_024 | 1/BA/2789:2791, 1/BA/2805:2806, 1/BA/2892:2894 | No text annotation Not in a motif group | ||
J3_4V75_025 | 1/BA/2812:2815, 1/BA/2831:2836, 1/BA/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
J3_4V75_026 | 1/BB/10:16, 1/BB/68:70, 1/BB/106:110 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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