6VYW Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6VYW_001 | 1/A/13:22 | No text annotation Not in a motif group | ||
| HL_6VYW_002 | 1/A/31:39 | No text annotation Not in a motif group | homologous HL_5UD5_002 HL_49288.1 | |
| HL_6VYW_003 | 1/A/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5HR6_003 HL_22280.1 | |
| HL_6VYW_004 | 1/B/13:22 | No text annotation Not in a motif group | ||
| HL_6VYW_005 | 1/B/29:41 | No text annotation Not in a motif group | ||
| HL_6VYW_006 | 1/B/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5HR6_003 HL_22280.1 | |
| HL_6VYW_007 | 1/D/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6VYW_008 | 1/D/80:89 | No text annotation Not in a motif group | ||
| HL_6VYW_009 | 1/D/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_6VYW_010 | 1/D/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_6VYW_011 | 1/D/207:212 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6VYW_012 | 1/D/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_6VYW_013 | 1/D/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_6VYW_014 | 1/D/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_6VYW_015 | 1/D/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_6VYW_016 | 1/D/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_6VYW_017 | 1/D/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_6VYW_018 | 1/D/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
| HL_6VYW_020 | 1/D/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_6VYW_021 | 1/D/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_6VYW_022 | 1/D/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_6VYW_023 | 1/D/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_6VYW_024 | 1/D/840:846 | No text annotation Not in a motif group | ||
| HL_6VYW_025 | 1/D/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_6VYW_026 | 1/D/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6VYW_028 | 1/D/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6VYW_029 | 1/D/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_6VYW_030 | 1/D/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_6VYW_031 | 1/D/1134:1140 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_03562.2 | |
| HL_6VYW_032 | 1/D/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_6VYW_033 | 1/D/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_6VYW_034 | 1/D/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6VYW_035 | 1/D/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_6VYW_036 | 1/D/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_6VYW_038 | 1/a/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_6VYW_039 | 1/a/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_6VYW_040 | 1/a/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_6VYW_041 | 1/a/137:142 | UNCG Not in a motif group | geometric HL_5J7L_030 HL_03562.2 | |
| HL_6VYW_042 | 1/a/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_6VYW_043 | 1/a/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.2 | |
| HL_6VYW_044 | 1/a/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_6VYW_045 | 1/a/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_6VYW_046 | 1/a/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_6VYW_047 | 1/a/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_6VYW_048 | 1/a/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_6VYW_049 | 1/a/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_6VYW_050 | 1/a/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_6VYW_051 | 1/a/462:467 | GNRA Not in a motif group | homologous HL_5J7L_147 HL_42097.1 | |
| HL_6VYW_052 | 1/a/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_6VYW_053 | 1/a/544:549 | No text annotation Not in a motif group | homologous HL_7RQB_017 NA | |
| HL_6VYW_054 | 1/a/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_89380.2 | |
| HL_6VYW_055 | 1/a/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_6VYW_056 | 1/a/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_6VYW_057 | 1/a/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
| HL_6VYW_058 | 1/a/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_6VYW_060 | 1/a/779:785 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_6VYW_061 | 1/a/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_64365.1 | |
| HL_6VYW_062 | 1/a/885:891 | No text annotation Not in a motif group | geometric HL_6DTD_001 HL_09136.1 | |
| HL_6VYW_064 | 1/a/978:985 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_6VYW_065 | 1/a/1065:1073 | No text annotation Not in a motif group | ||
| HL_6VYW_066 | 1/a/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
| HL_6VYW_067 | 1/a/1172:1177 | No text annotation Not in a motif group | ||
| HL_6VYW_068 | 1/a/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_6VYW_069 | 1/a/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_6VYW_070 | 1/a/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_6VYW_071 | 1/a/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_6VYW_072 | 1/a/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_6VYW_073 | 1/a/1451:1459 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_53837.1 | |
| HL_6VYW_074 | 1/a/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_6VYW_075 | 1/a/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
| HL_6VYW_076 | 1/a/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_6VYW_078 | 1/a/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_6VYW_079 | 1/a/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
| HL_6VYW_080 | 1/a/1728:1731 | No text annotation Not in a motif group | geometric HL_5J7L_176 HL_98426.1 | |
| HL_6VYW_081 | 1/a/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_6VYW_082 | 1/a/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.5 | |
| HL_6VYW_083 | 1/a/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_6VYW_084 | 1/a/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_42097.1 | |
| HL_6VYW_086 | 1/a/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_6VYW_088 | 1/a/2143:2148 | No text annotation Not in a motif group | homologous HL_5J7L_184 NA | |
| HL_6VYW_089 | 1/a/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_6VYW_091 | 1/a/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_6VYW_092 | 1/a/2303:2313 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.3 | |
| HL_6VYW_093 | 1/a/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_6VYW_094 | 1/a/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_6VYW_095 | 1/a/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_6VYW_096 | 1/a/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_6VYW_097 | 1/a/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_6VYW_098 | 1/a/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_6VYW_100 | 1/a/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_6VYW_101 | 1/a/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_6VYW_102 | 1/a/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_6VYW_103 | 1/a/2745:2759 | No text annotation Not in a motif group | ||
| HL_6VYW_104 | 1/a/2794:2802 | No text annotation Not in a motif group | geometric HL_5TBW_015 HL_03345.1 | |
| HL_6VYW_105 | 1/a/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_6VYW_106 | 1/a/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 | |
| HL_6VYW_107 | 1/d/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_6VYW_108 | 1/d/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VYW_019 | No text annotation | ||
| HL_6VYW_027 | No text annotation | ||
| HL_6VYW_037 | No text annotation | ||
| HL_6VYW_059 | No text annotation | ||
| HL_6VYW_063 | No text annotation | ||
| HL_6VYW_077 | No text annotation | ||
| HL_6VYW_085 | No text annotation | ||
| HL_6VYW_087 | No text annotation | ||
| HL_6VYW_090 | No text annotation | ||
| HL_6VYW_099 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6VYW_001 | 1/D/30:32, 1/D/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_6VYW_002 | 1/D/44:45, 1/D/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_6VYW_003 | 1/D/47:52, 1/D/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_6VYW_004 | 1/D/54:56, 1/D/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_6VYW_005 | 1/D/63:66, 1/D/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_6VYW_006 | 1/D/67:69, 1/D/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_6VYW_007 | 1/D/70:73, 1/D/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_6VYW_008 | 1/D/75:77, 1/D/92:95 | Single bulged G, near cWW Not in a motif group | homologous IL_5J7L_008 IL_82068.2 | |
| IL_6VYW_009 | 1/D/128:131, 1/D/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
| IL_6VYW_010 | 1/D/132:136, 1/D/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
| IL_6VYW_011 | 1/D/144:146, 1/D/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_6VYW_012 | 1/D/147:153, 1/D/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_6VYW_013 | 1/D/203:207, 1/D/212:214 | No text annotation Not in a motif group | homologous IL_5J7L_013 IL_33912.1 | |
| IL_6VYW_014 | 1/D/242:247, 1/D/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_6VYW_015 | 1/D/249:252, 1/D/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_6VYW_016 | 1/D/292:293, 1/D/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_6VYW_017 | 1/D/367:369, 1/D/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_6VYW_018 | 1/D/371:375, 1/D/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_6VYW_019 | 1/D/375:376, 1/D/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6VYW_020 | 1/D/409:416, 1/D/427:433 | No text annotation Not in a motif group | ||
| IL_6VYW_021 | 1/D/440:442, 1/D/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_6VYW_022 | 1/D/446:450, 1/D/483:488 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
| IL_6VYW_023 | 1/D/450:455, 1/D/477:483 | No text annotation Not in a motif group | homologous IL_5J7L_023 IL_70801.1 | |
| IL_6VYW_024 | 1/D/504:511, 1/D/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_6VYW_026 | 1/D/569:575, 1/D/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
| IL_6VYW_027 | 1/D/580:584, 1/D/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_6VYW_028 | 1/D/594:596, 1/D/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_6VYW_029 | 1/D/597:598, 1/D/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_6VYW_030 | 1/D/605:612, 1/D/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_6VYW_031 | 1/D/654:655, 1/D/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.2 | |
| IL_6VYW_032 | 1/D/658:659, 1/D/746:748 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_6VYW_033 | 1/D/662:666, 1/D/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_6VYW_034 | 1/D/673:678, 1/D/712:717 | No text annotation Not in a motif group | homologous IL_5J7L_034 IL_04668.1 | |
| IL_6VYW_035 | 1/D/684:688, 1/D/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_6VYW_036 | 1/D/774:778, 1/D/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_6VYW_037 | 1/D/779:783, 1/D/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_6VYW_038 | 1/D/887:894, 1/D/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_6VYW_039 | 1/D/922:923, 1/D/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_6VYW_040 | 1/D/925:927, 1/D/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_6VYW_041 | 1/D/933:935, 1/D/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_6VYW_042 | 1/D/953:954, 1/D/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_6VYW_043 | 1/D/993:997, 1/D/1044:1045 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_47078.1 | |
| IL_6VYW_044 | 1/D/998:1000, 1/D/1040:1043 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_6VYW_045 | 1/D/1003:1006, 1/D/1023:1037 | No text annotation Not in a motif group | ||
| IL_6VYW_046 | 1/D/1048:1050, 1/D/1208:1209 | Single bulged U Not in a motif group | geometric IL_5J7L_046 IL_83039.13 | |
| IL_6VYW_047 | 1/D/1050:1052, 1/D/1206:1208 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_6VYW_048 | 1/D/1052:1056, 1/D/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_6VYW_049 | 1/D/1057:1058, 1/D/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_6VYW_050 | 1/D/1060:1061, 1/D/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_6VYW_051 | 1/D/1061:1063, 1/D/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_6VYW_052 | 1/D/1124:1128, 1/D/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_6VYW_053 | 1/D/1129:1132, 1/D/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_6VYW_054 | 1/D/1158:1161, 1/D/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6VYW_055 | 1/D/1247:1253, 1/D/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_6VYW_056 | 1/D/1255:1258, 1/D/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_6VYW_057 | 1/D/1259:1263, 1/D/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_6VYW_058 | 1/D/1303:1308, 1/D/1329:1334 | No text annotation Not in a motif group | geometric IL_5J7L_057 IL_19954.2 | |
| IL_6VYW_059 | 1/D/1399:1401, 1/D/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_6VYW_062 | 1/D/1412:1414, 1/D/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_6VYW_063 | 1/D/1416:1419, 1/D/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_6VYW_064 | 1/D/1430:1435, 1/D/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_6VYW_065 | 1/D/1440:1442, 1/D/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.2 | |
| IL_6VYW_066 | 1/D/1445:1448, 1/D/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 | |
| IL_6VYW_067 | 1/a/24:30, 1/a/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5J7L_245 IL_66414.6 | |
| IL_6VYW_068 | 1/a/36:37, 1/a/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_6VYW_069 | 1/a/43:44, 1/a/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_6VYW_070 | 1/a/81:85, 1/a/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_6VYW_071 | 1/a/183:184, 1/a/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_6VYW_072 | 1/a/188:194, 1/a/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.7 | |
| IL_6VYW_073 | 1/a/239:245, 1/a/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_6VYW_074 | 1/a/269:271, 1/a/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_6VYW_075 | 1/a/274:281, 1/a/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_6VYW_076 | 1/a/293:295, 1/a/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_6VYW_077 | 1/a/481:484, 1/a/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_6VYW_078 | 1/a/536:539, 1/a/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_6VYW_079 | 1/a/564:566, 1/a/575:577 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_95997.1 | |
| IL_6VYW_080 | 1/a/606:610, 1/a/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_6VYW_081 | 1/a/672:674, 1/a/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_6VYW_082 | 1/a/674:678, 1/a/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_6VYW_083 | 1/a/697:698, 1/a/763:765 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
| IL_6VYW_084 | 1/a/702:703, 1/a/728:730 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_00225.2 | |
| IL_6VYW_085 | 1/a/703:707, 1/a/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_6VYW_086 | 1/a/738:740, 1/a/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_6VYW_087 | 1/a/741:742, 1/a/754:756 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6VYW_088 | 1/a/742:744, 1/a/753:754 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_6VYW_089 | 1/a/775:777, 1/a/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_6VYW_090 | 1/a/844:847, 1/a/933:934 | Other IL Not in a motif group | homologous IL_5J7L_267 IL_92001.1 | |
| IL_6VYW_091 | 1/a/847:848, 1/a/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_6VYW_092 | 1/a/849:850, 1/a/927:929 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_6VYW_093 | 1/a/856:862, 1/a/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_6VYW_094 | 1/a/862:863, 1/a/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
| IL_6VYW_095 | 1/a/864:868, 1/a/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_6VYW_096 | 1/a/870:872, 1/a/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_6VYW_097 | 1/a/875:879, 1/a/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_6VYW_098 | 1/a/880:883, 1/a/893:897 | No text annotation Not in a motif group | ||
| IL_6VYW_099 | 1/a/994:996, 1/a/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_6VYW_100 | 1/a/998:1002, 1/a/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_6VYW_101 | 1/a/1004:1011, 1/a/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_6VYW_102 | 1/a/1011:1013, 1/a/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
| IL_6VYW_103 | 1/a/1018:1024, 1/a/1140:1144 | No text annotation Not in a motif group | homologous IL_5J7L_280 IL_57188.3 | |
| IL_6VYW_104 | 1/a/1024:1030, 1/a/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_6VYW_105 | 1/a/1031:1034, 1/a/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_6VYW_106 | 1/a/1038:1041, 1/a/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_6VYW_107 | 1/a/1043:1051, 1/a/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
| IL_6VYW_108 | 1/a/1059:1062, 1/a/1076:1079 | No text annotation Not in a motif group | homologous IL_5J7L_285 IL_23544.2 | |
| IL_6VYW_109 | 1/a/1087:1090, 1/a/1101:1102 | Major groove platform Not in a motif group | geometric IL_3OXE_003 IL_27635.1 | |
| IL_6VYW_110 | 1/a/1196:1198, 1/a/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_52767.2 | |
| IL_6VYW_111 | 1/a/1202:1206, 1/a/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6VYW_112 | 1/a/1208:1215, 1/a/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_6VYW_113 | 1/a/1262:1269, 1/a/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_6VYW_114 | 1/a/1310:1313, 1/a/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_6VYW_115 | 1/a/1319:1323, 1/a/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_6VYW_116 | 1/a/1351:1355, 1/a/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_6VYW_117 | 1/a/1357:1361, 1/a/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_6VYW_118 | 1/a/1410:1411, 1/a/1590:1592 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6VYW_119 | 1/a/1411:1413, 1/a/1589:1590 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_6VYW_120 | 1/a/1415:1416, 1/a/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_6VYW_121 | 1/a/1417:1421, 1/a/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_6VYW_122 | 1/a/1432:1435, 1/a/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_6VYW_123 | 1/a/1437:1440, 1/a/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_6VYW_124 | 1/a/1450:1451, 1/a/1459:1461 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.13 | |
| IL_6VYW_125 | 1/a/1468:1471, 1/a/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_6VYW_126 | 1/a/1474:1478, 1/a/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_6VYW_127 | 1/a/1480:1482, 1/a/1507:1511 | No text annotation Not in a motif group | ||
| IL_6VYW_128 | 1/a/1489:1491, 1/a/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_6VYW_129 | 1/a/1526:1529, 1/a/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_6VYW_130 | 1/a/1651:1656, 1/a/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_6VYW_131 | 1/a/1663:1665, 1/a/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_6VYW_132 | 1/a/1666:1669, 1/a/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_6VYW_133 | 1/a/1669:1674, 1/a/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_5J7L_307 IL_82842.2 | |
| IL_6VYW_134 | 1/a/1686:1691, 1/a/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.2 | |
| IL_6VYW_135 | 1/a/1712:1718, 1/a/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_6VYW_136 | 1/a/1720:1724, 1/a/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_6VYW_137 | 1/a/1727:1728, 1/a/1731:1733 | Single bulged C Not in a motif group | homologous IL_5J7L_311 IL_61258.12 | |
| IL_6VYW_138 | 1/a/1770:1771, 1/a/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_6VYW_139 | 1/a/1798:1804, 1/a/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_6VYW_140 | 1/a/1837:1840, 1/a/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_6VYW_141 | 1/a/1841:1842, 1/a/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_6VYW_142 | 1/a/1846:1849, 1/a/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_6VYW_143 | 1/a/1864:1867, 1/a/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_6VYW_144 | 1/a/1933:1934, 1/a/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_6VYW_146 | 1/a/2050:2052, 1/a/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_6VYW_147 | 1/a/2054:2056, 1/a/2612:2615 | No text annotation Not in a motif group | ||
| IL_6VYW_148 | 1/a/2064:2066, 1/a/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_6VYW_150 | 1/a/2070:2071, 1/a/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_6VYW_151 | 1/a/2081:2083, 1/a/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_6VYW_152 | 1/a/2085:2087, 1/a/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_6VYW_153 | 1/a/2103:2105, 1/a/2184:2186 | No text annotation Not in a motif group | geometric IL_7A0S_107 IL_51629.2 | |
| IL_6VYW_154 | 1/a/2108:2110, 1/a/2179:2181 | No text annotation Not in a motif group | geometric IL_4KZD_003 IL_95997.1 | |
| IL_6VYW_155 | 1/a/2110:2121, 1/a/2177:2179 | No text annotation Not in a motif group | ||
| IL_6VYW_156 | 1/a/2122:2127, 1/a/2161:2176 | No text annotation Not in a motif group | ||
| IL_6VYW_157 | 1/a/2129:2136, 1/a/2155:2159 | Kink-turn Not in a motif group | homologous IL_5J7L_330 IL_70923.2 | |
| IL_6VYW_158 | 1/a/2202:2204, 1/a/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_6VYW_159 | 1/a/2350:2353, 1/a/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_6VYW_160 | 1/a/2401:2403, 1/a/2414:2415 | No text annotation Not in a motif group | ||
| IL_6VYW_161 | 1/a/2453:2455, 1/a/2496:2500 | No text annotation Not in a motif group | homologous IL_5J7L_335 NA | |
| IL_6VYW_163 | 1/a/2459:2461, 1/a/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.2 | |
| IL_6VYW_164 | 1/a/2466:2470, 1/a/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_6VYW_165 | 1/a/2507:2509, 1/a/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_6VYW_166 | 1/a/2510:2512, 1/a/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.2 | |
| IL_6VYW_167 | 1/a/2512:2513, 1/a/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_6VYW_168 | 1/a/2522:2523, 1/a/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_6VYW_169 | 1/a/2588:2590, 1/a/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_6VYW_170 | 1/a/2591:2592, 1/a/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_6VYW_171 | 1/a/2636:2640, 1/a/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_6VYW_172 | 1/a/2652:2658, 1/a/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_5J7L_346 IL_16458.1 | |
| IL_6VYW_173 | 1/a/2680:2684, 1/a/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_6VYW_174 | 1/a/2687:2691, 1/a/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_6VYW_175 | 1/a/2695:2696, 1/a/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_6VYW_176 | 1/a/2737:2742, 1/a/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_6VYW_177 | 1/a/2806:2811, 1/a/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_6VYW_178 | 1/a/2838:2839, 1/a/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_6VYW_179 | 1/a/2843:2846, 1/a/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_6VYW_180 | 1/a/2847:2852, 1/a/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
| IL_6VYW_181 | 1/d/17:18, 1/d/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
| IL_6VYW_182 | 1/d/23:28, 1/d/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_6VYW_183 | 1/d/30:31, 1/d/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_6VYW_184 | 1/d/34:38, 1/d/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_5J7L_358 IL_58103.6 | |
| IL_6VYW_185 | 1/d/71:79, 1/d/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VYW_025 | No text annotation | ||
| IL_6VYW_060 | No text annotation | ||
| IL_6VYW_061 | No text annotation | ||
| IL_6VYW_145 | No text annotation | ||
| IL_6VYW_149 | Not an internal loop | ||
| IL_6VYW_162 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6VYW_001 | 1/D/46:47, 1/D/361:367, 1/D/393:395 | No text annotation Not in a motif group | ||
| J3_6VYW_002 | 1/D/586:588, 1/D/651:654, 1/D/754:755 | No text annotation Not in a motif group | ||
| J3_6VYW_003 | 1/D/672:673, 1/D/717:725, 1/D/732:734 | No text annotation Not in a motif group | ||
| J3_6VYW_004 | 1/D/826:829, 1/D/857:861, 1/D/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_6VYW_005 | 1/D/936:939, 1/D/1344:1350, 1/D/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_6VYW_006 | 1/D/942:946, 1/D/1235:1237, 1/D/1337:1341 | No text annotation Not in a motif group | ||
| J3_6VYW_007 | 1/D/955:962, 1/D/973:984, 1/D/1221:1225 | No text annotation Not in a motif group | ||
| J3_6VYW_008 | 1/D/990:993, 1/D/1045:1047, 1/D/1210:1215 | No text annotation Not in a motif group | ||
| J3_6VYW_010 | 1/D/1073:1074, 1/D/1083:1087, 1/D/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_6VYW_011 | 1/D/1116:1118, 1/D/1155:1158, 1/D/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_6VYW_012 | 1/D/1237:1241, 1/D/1296:1303, 1/D/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_6VYW_013 | 1/a/30:31, 1/a/474:481, 1/a/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_6VYW_014 | 1/a/56:57, 1/a/70:76, 1/a/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_6VYW_015 | 1/a/683:689, 1/a/773:775, 1/a/791:794 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_6VYW_016 | 1/a/698:700, 1/a/732:736, 1/a/760:763 | No text annotation Not in a motif group | homologous J3_5J7L_039 NA | |
| J3_6VYW_017 | 1/a/1054:1057, 1/a/1081:1087, 1/a/1102:1105 | No text annotation Not in a motif group | ||
| J3_6VYW_018 | 1/a/1298:1303, 1/a/1625:1627, 1/a/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_6VYW_019 | 1/a/1306:1309, 1/a/1605:1611, 1/a/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_6VYW_020 | 1/a/1344:1349, 1/a/1382:1385, 1/a/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_6VYW_021 | 1/a/2091:2093, 1/a/2196:2200, 1/a/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_6VYW_022 | 1/a/2295:2299, 1/a/2317:2323, 1/a/2332:2337 | No text annotation Not in a motif group | ||
| J3_6VYW_023 | 1/a/2517:2520, 1/a/2545:2547, 1/a/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_6VYW_024 | 1/a/2789:2791, 1/a/2805:2806, 1/a/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_6VYW_025 | 1/a/2812:2815, 1/a/2831:2836, 1/a/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_6VYW_026 | 1/d/10:16, 1/d/68:70, 1/d/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VYW_009 | No text annotation |
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