JAR3D on RF03019

There are no chains in PDB that we map to Rfam family RF03019.

Loop 1 Hairpin loop

Column numbers: 14-88

    Scored sequences and counts

    
    -------------------GAAA----------------------------------------------------    3

    
    -------------------UAAC----------------------------------------------------    3

    
    -------------------AAUG----------------------------------------------------    2

    
    -------------------UAU-----------------------------------------------------    2

    
    ---CUUACCAUCAUUUCUUUUCA---------------------------------AAGGAUUU-UGGUAAACAU    1

    
    -------------------CAGGUAAAGUACCGCACAGCUUGCGGUUGAGAAUGCC-------------------    1

    
    UUUGG-AGAAUUAUUCU--CCU------------------------------------AGAAUAAUUUGAUGAAG    1

    
    ---UUAGAGGUCUGUCU--CCCA-----------------------------------AGACAGACUAAUGAAGG    1

    
    AUC----GAGUUCGUUC--CGACA----------------------------------GAAUGGAAAUUAAAGAC    1

    
    G-AGAUAUCUAUUUC----CCAAUA-----------------------------------GACGUUGAUGAAAGC    1

    
    U---GGAAGGUUUCUCU--ACCC-----------------------------------AGAGAAAACUAAUGAAG    1

    
    -----UUAUGUGGUU----UUCAUUUUU--------------------------------GAUCAUGUAAGAAAU    1

    
    G-CUUGG-AGGUUUUU---CCAA------------------------------------GAAAAUCUGUGAAGAC    1

    
    U---GGAGAAUUAUUUU--CCU------------------------------------AAAAUAUUUUUAUGAAA    1

    
    UAUCAAUUAACACCG----ACUA-------------------------------------CGGAGUACCAAGAUA    1

    
    UAUCUUCUUUUCAG-----UUCUUU------------------------------------CUUAACCUGCCCCA    1

    
    CCUGGAAGCUC--------CUCAUCUUUUU----------------------------------GAGCAAUUGAU    1

    
    GGCGAGUG-CUGCA-----UAACC-------------------------------------UGCAACCAGUU-CC    1

    
    UCU---AAAACUUAU----CCCA-------------------------------------AUAAGUCAAUGAAGA    1

    
    UA-AAAUUAAUUC------CUCUU--------------------------------------GUUUUAAUUUAUA    1

    
    GAAUCUA------------UGACAACACGACCCU----------------------------------UAGGUUC    1

    
    UC-CUGA--CUAUA-----UAGA--------------------------------------UAUACUAUCAGUGA    1

    
    UCUUUUU------------GUAUUUACUGUCCCA----------------------------------GCUGCGA    1

    
    --AUGUUUUAUCU------AAAA---------------------------------------AGAUAAAGCAAAA    1

    
    UUAU-UUUUGU--------CCUGAA---------------------------------------GCACUAUAUAG    1

    
    UAUGUCCUGGC--------AACC-----------------------------------------GAAAGGAAACU    1

    
    AUUGCCCAGAA--------GUAU-----------------------------------------UUCUU-GCAUG    1

    
    CAUCGUUCCU---------CUACAA----------------------------------------AGGAUUU-UG    1

    
    UAAUUUGUCUU--------AGG------------------------------------------GAGGCACUCUC    1

    
    UAUAUCUC-----------CUUGAGCAA---------------------------------------GAGAUAUA    1

    
    UAUGUUUC-----------CCUGAGCAA---------------------------------------GAAACGUG    1

    
    GAUAUUCUUU---------GAAA------------------------------------------AGAGAAUAUG    1

    
    UCUCUGAGU----------AGAGUA-----------------------------------------AGUUGGAGA    1

    
    UUGACAAGUA---------AAAU------------------------------------------UACUUGAAAA    1

    
    C------------------CCUGAAAAAUAUCAAUGAAA-----------------------------------G    1

    
    UGCAUUC------------CAAUUGUU-----------------------------------------GAAUGCA    1

    
    UAACU--------------UGAUUUGUGAU----------------------------------------AGUUA    1

    
    ---AUUCCA----------GCAA-------------------------------------------UGGAAUUAU    1

    
    UGCUUCUU-----------UAU---------------------------------------------GAGAAGUA    1

    
    CC-UGAUU-----------UCG---------------------------------------------AAUCAGGG    1

    
    AUCAU--------------AAAUUCAC-------------------------------------------AU-AU    1

    
    CUUG---------------CAUGAGCAA-------------------------------------------CAAG    1

    
    GCACA--------------ACAAGGA--------------------------------------------UGUGU    1

    
    UUUC---------------CAUGAGGAA-------------------------------------------GAAA    1

    
    C-GCC--------------AAAAAA---------------------------------------------GGUAG    1

    
    AAGUU--------------UAAG-----------------------------------------------GACUU    1

    
    AGAA---------------UGUUAU----------------------------------------------UUUU    1

    
    AUU----------------UAUGAAGC---------------------------------------------AAU    1

    
    CCCAA--------------AUA------------------------------------------------UUGGG    1

    
    CUGCA--------------GUU------------------------------------------------UGCAG    1

    
    -------------------CCAUAUUAAAAA--------------------------------------------    1

    
    G-GC---------------UUAAA-----------------------------------------------GCGC    1

    
    -------------------AGAAGUAAUGA---------------------------------------------    1

    
    -------------------AAUGAUCUGG----------------------------------------------    1

    
    GCU----------------GAUA-------------------------------------------------AGC    1

    
    -------------------CCUGAGCAA-----------------------------------------------    1

    
    GU-----------------UUAAU-------------------------------------------------AC    1

    
    GUU----------------UUU--------------------------------------------------AAC    1

    
    -------------------GAAAACAA------------------------------------------------    1

    
    -------------------UUGGGACU------------------------------------------------    1

    
    AG-----------------GUGA--------------------------------------------------CU    1

    
    CU-----------------CUAG--------------------------------------------------AG    1

    
    GU-----------------UUUU--------------------------------------------------AC    1

    
    UA-----------------GUAA--------------------------------------------------UA    1

    
    -------------------AAUAAUA-------------------------------------------------    1

    
    -------------------CUAUAGA-------------------------------------------------    1

    
    UG-----------------UUU---------------------------------------------------CA    1

    
    -------------------AUGAAA--------------------------------------------------    1

    
    -------------------AUUAGA--------------------------------------------------    1

    
    -------------------CUAUAA--------------------------------------------------    1

    
    -------------------GCGGAA--------------------------------------------------    1

    
    -------------------GUUAAA--------------------------------------------------    1

    
    -------------------GUUUAU--------------------------------------------------    1

    
    G------------------GAAA---------------------------------------------------C    1

    
    U------------------AAAU---------------------------------------------------A    1

    
    U------------------UUUU---------------------------------------------------A    1

    
    -------------------AAACC---------------------------------------------------    1

    
    -------------------CUUUA---------------------------------------------------    1

    
    -------------------GAACA---------------------------------------------------    1

    
    -------------------GUAAA---------------------------------------------------    1

    
    -------------------UUAAU---------------------------------------------------    1

    
    A------------------AGA----------------------------------------------------U    1

    
    C------------------UAU----------------------------------------------------G    1

    
    U------------------GGAC----------------------------------------------------    1

    
    -------------------AAAA----------------------------------------------------    1

    
    -------------------AUAU----------------------------------------------------    1

    
    -------------------AUUU----------------------------------------------------    1

    
    -------------------CAUG----------------------------------------------------    1

    
    -------------------GCAA----------------------------------------------------    1

    
    -------------------GGAA----------------------------------------------------    1

    
    -------------------UAAU----------------------------------------------------    1

    
    -------------------UAGC----------------------------------------------------    1

    
    -------------------UGGG----------------------------------------------------    1

    
    -------------------GUA-----------------------------------------------------    1

    
    -------------------UGG-----------------------------------------------------    1

    
    -------------------UGU-----------------------------------------------------    1

    
    -------------------UUA-----------------------------------------------------    1

    
    -------------------UUG-----------------------------------------------------    1

Click on headings to reorder table

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group HL_56334.1 View motif instance in 3D Basepair signature: cWW-F	18.27	-5235.65	5	5	Mini UNCG
2	Motif group HL_70782.2 View motif instance in 3D Basepair signature: cWW-F	14.42	-5126.10	5	5
3	Motif group HL_53890.2 View motif instance in 3D Basepair signature: cWW-F-F-F	12.50	-4337.61	5	4.5
4	Motif group HL_32346.4 View motif instance in 3D Basepair signature: cWW-F	12.50	-5247.85	5.5	5.5
5	Motif group HL_37824.7 View motif instance in 3D Basepair signature: cWW-F-F-F-F	11.54	-3701.07	3.5	4	GNRA
6	Motif group HL_75660.5 View motif instance in 3D Basepair signature: cWW-F	11.54	-5840.91	4.5	4
7	Motif group HL_04783.2 View motif instance in 3D Basepair signature: cWW-F-F-F	10.58	-3841.58	4.5	4
8	Motif group HL_82710.2 View motif instance in 3D Basepair signature: cWW-F-F-F	10.58	-4757.61	5.5	5
9	Motif group HL_38901.2 View motif instance in 3D Basepair signature: cWW-F-cSH	10.58	-4939.52	4.5	4	tRNA D-loop
10	Motif group HL_48778.2 View motif instance in 3D Basepair signature: cWW-F	10.58	-5150.52	5	5.5	Mini UNCG
11	Motif group HL_38168.1 View motif instance in 3D Basepair signature: cWW-F	9.62	-5851.10	5	5
12	Motif group HL_48417.5 View motif instance in 3D Basepair signature: cWW-F-F	8.65	-3623.93	4	4
13	Motif group HL_13189.1 View motif instance in 3D Basepair signature: cWW-F-F	8.65	-4742.84	5	6
14	Motif group HL_56131.2 View motif instance in 3D Basepair signature: cWW-F-F	7.69	-4294.53	5	4
15	Motif group HL_46501.1 View motif instance in 3D Basepair signature: cWW-cWS	7.69	-4940.35	6	5
16	Motif group HL_50318.1 View motif instance in 3D Basepair signature: cWW-cSH-F-F	6.73	-4737.28	6	5
17	Motif group HL_69752.2 View motif instance in 3D Basepair signature: cWW-F	6.73	-5858.02	6	5.5
18	Motif group HL_52953.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F	6.73	-6745.67	5	5
19	Motif group HL_80709.3 View motif instance in 3D Basepair signature: cWW-F-F-F	6.73	-6959.80	5	4.5
20	Motif group HL_50006.2 View motif instance in 3D Basepair signature: cWW-F-F	5.77	-4303.54	5	4
21	Motif group HL_57875.1 View motif instance in 3D Basepair signature: cWW-F-F	4.81	-4726.71	4.5	5
22	Motif group HL_47787.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	4.81	-4983.00	5	4.5
23	Motif group HL_86870.2 View motif instance in 3D Basepair signature: cWW-F-F-F	3.85	-3977.48	5.5	5.5
24	Motif group HL_20535.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	3.85	-4509.79	6	4.5
25	Motif group HL_78677.1 View motif instance in 3D Basepair signature: cWW-F-F	3.85	-5464.55	5	6
26	Motif group HL_60914.1 View motif instance in 3D Basepair signature: cWW-F	3.85	-6213.28	7.5	6
27	Motif group HL_65794.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F	3.85	-6439.68	4	5	Pseudoknot geometry
28	Motif group HL_01609.3 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F	2.88	-2841.94	5	4	T-loop with 2 bulged bases not stacked
29	Motif group HL_28075.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	2.88	-3249.16	6	5
30	Motif group HL_78347.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F	2.88	-3554.35	5	4.5
31	Motif group HL_50537.6 View motif instance in 3D Basepair signature: cWW-F-F-F	2.88	-3812.58	6	5	tRNA anticodon loop with synthetase
32	Motif group HL_80922.2 View motif instance in 3D Basepair signature: cWW-tSH-F	2.88	-3956.17	5	5
33	Motif group HL_07886.3 View motif instance in 3D Basepair signature: cWW-F-F-F	2.88	-3958.00	5	4
34	Motif group HL_49922.4 View motif instance in 3D Basepair signature: cWW-F-F-F	2.88	-4386.88	5	5
35	Motif group HL_33983.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	2.88	-4398.94	6.5	5
36	Motif group HL_06059.6 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	2.88	-4421.61	6	4.5	tRNA anticodon loop
37	Motif group HL_37344.1 View motif instance in 3D Basepair signature: cWW-F-F	2.88	-4531.78	6	5
38	Motif group HL_43517.1 View motif instance in 3D Basepair signature: cWW-F-F-F	2.88	-4754.13	6	6
39	Motif group HL_32392.1 View motif instance in 3D Basepair signature: cWW-F-F	2.88	-4976.84	6	5.5
40	Motif group HL_97917.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	2.88	-4986.50	6	5
41	Motif group HL_93535.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	2.88	-5037.44	5	4.5
42	Motif group HL_57176.2 View motif instance in 3D Basepair signature: cWW-F-F-F	2.88	-6843.48	4	4.5	Pseudoknot geometry with 3' bulge
43	Motif group HL_29966.1 View motif instance in 3D Basepair signature: cWW-F-F-F	2.88	-6970.60	6.5	6
44	Motif group HL_77436.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	1.92	-2460.48	4.5	3.5	T-loop related
45	Motif group HL_64690.6 View motif instance in 3D Basepair signature: cWW-cSW-F-F-F-F	1.92	-3144.45	6	5
46	Motif group HL_42046.2 View motif instance in 3D Basepair signature: cWW-tSS-F-F-F	1.92	-3220.26	6	5
47	Motif group HL_15802.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F	1.92	-3403.00	7	6
48	Motif group HL_80008.1 View motif instance in 3D Basepair signature: cWW-F-F-F-cSH-F	1.92	-3794.11	7	6
49	Motif group HL_25061.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	1.92	-4176.83	7	5
50	Motif group HL_08100.1 View motif instance in 3D Basepair signature: cWW-F-F-F	1.92	-4260.57	6	5
51	Motif group HL_13963.3 View motif instance in 3D Basepair signature: cWW-F-F	1.92	-4317.36	5	5
52	Motif group HL_87954.2 View motif instance in 3D Basepair signature: cWW-tSW-F	1.92	-4386.96	5	4.5
53	Motif group HL_62934.1 View motif instance in 3D Basepair signature: cWW-tSH-F	1.92	-4388.44	6	5.5
54	Motif group HL_71391.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	1.92	-4514.44	5	5
55	Motif group HL_59843.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	1.92	-5079.18	5.5	5
56	Motif group HL_56676.1 View motif instance in 3D Basepair signature: cWW-F-F	1.92	-5202.23	5	5
57	Motif group HL_55195.3 View motif instance in 3D Basepair signature: cWW-F	1.92	-5995.88	5	5
58	Motif group HL_85993.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	1.92	-6318.42	7	6
59	Motif group HL_94980.1 View motif instance in 3D Basepair signature: cWW-F-F	1.92	-6499.16	7	7
60	Motif group HL_65313.1 View motif instance in 3D Basepair signature: cWW-F-F-F	1.92	-6974.89	6.5	6.5
61	Motif group HL_26631.1 View motif instance in 3D Basepair signature: cWW-F-F-F	1.92	-7202.02	7	6.5
62	Motif group HL_86012.1 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F-F	0.96	-1848.70	7	6	T-loop with unstacked turn
63	Motif group HL_28252.8 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F-F-F	0.96	-2191.99	6	4	T-loop with 2 stacked bulged bases
64	Motif group HL_26934.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.96	-2225.49	7	5
65	Motif group HL_73266.9 View motif instance in 3D Basepair signature: cWW-F-F-cSW-cSH-F	0.96	-2322.69	6	5
66	Motif group HL_57863.1 View motif instance in 3D Basepair signature: cWW-F-F-cWH-cWH-F	0.96	-2347.62	8	6	G-quadruplex fragment
67	Motif group HL_66853.7 View motif instance in 3D Basepair signature: cWW-cWS-F-cSH	0.96	-2413.01	7	5.5
68	Motif group HL_06226.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.96	-2458.28	8	6
69	Motif group HL_41464.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.96	-2737.79	6.5	5
70	Motif group HL_86769.4 View motif instance in 3D Basepair signature: cWW-cWW-cSH-F	0.96	-2759.21	6	5
71	Motif group HL_73255.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.96	-2933.91	8	6
72	Motif group HL_18565.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F	0.96	-2955.21	7	5.5
73	Motif group HL_87553.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.96	-3388.02	5	4
74	Motif group HL_77082.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.96	-3581.16	6	4	Pseudoknot geometry
75	Motif group HL_04259.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.96	-3626.12	5	4	GNRA with extra cWW
76	Motif group HL_22584.6 View motif instance in 3D Basepair signature: cWW-tSW-F	0.96	-3667.18	5	5	Fab BL3-6 binding hairpin with tSW
77	Motif group HL_99748.1 View motif instance in 3D Basepair signature: cWW-F-F-cSH	0.96	-3835.11	6	5	Other HL
78	Motif group HL_21372.1 View motif instance in 3D Basepair signature: cWW-F-cSH-F-F	0.96	-4079.05	6.5	6
79	Motif group HL_32735.2 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F-F	0.96	-4176.43	6.5	5
80	Motif group HL_34617.5 View motif instance in 3D Basepair signature: cWW-tSW-F	0.96	-4223.42	5	5	UNCG
81	Motif group HL_97733.1 View motif instance in 3D Basepair signature: cWW-F-F-F-cSH-F	0.96	-4344.28	8	7
82	Motif group HL_55436.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.96	-4369.85	7	6
83	Motif group HL_25967.2 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F	0.96	-4678.40	6	6
84	Motif group HL_66103.1 View motif instance in 3D Basepair signature: cWW-F-F	0.96	-4746.48	6	5
85	Motif group HL_59330.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.96	-4941.74	7	6
86	Motif group HL_83632.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.96	-5078.26	6	5	tRNA anticodon loop
87	Motif group HL_10453.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.96	-5442.54	6	4	tRNA anticodon loop
88	Motif group HL_35941.1 View motif instance in 3D Basepair signature: cWW-F	0.96	-5488.12	7	6.5
89	Motif group HL_22622.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.96	-5802.64	6	5
90	Motif group HL_89199.2 View motif instance in 3D Basepair signature: cWW-F-F-F	0.96	-6145.02	6	5.5	Mini UNCG
91	Motif group HL_22135.1 View motif instance in 3D Basepair signature: cWW-F-F	0.96	-6195.33	6.5	6
92	Motif group HL_39243.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.96	-6242.45	6	5
93	Motif group HL_76094.1 View motif instance in 3D Basepair signature: cWW-cWS-F-F	0.96	-6450.65	7	6
94	Motif group HL_51447.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.96	-6512.63	6	6
95	Motif group HL_31585.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.96	-6725.60	5	4	Purine riboswitch
96	Motif group HL_86883.1 View motif instance in 3D Basepair signature: cWW-F-F-F	0.96	-6992.32	6	6
97	Motif group HL_93324.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.96	-7120.10	5	4	Pseudoknot geometry
98	Motif group HL_78197.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.96	-7127.40	5	4
99	Motif group HL_67667.2 View motif instance in 3D Basepair signature: cWW-F-F	0.96	-7504.68	6	5.5
100	Motif group HL_81100.2 View motif instance in 3D Basepair signature: cWW	0.96	-8116.07	6	5.5
101	Motif group HL_91641.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F	0.00	-351.65	13	11
102	Motif group HL_07583.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F	0.00	-380.55	10	8
103	Motif group HL_81205.3 View motif instance in 3D Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F	0.00	-442.81	10	9
104	Motif group HL_84847.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F	0.00	-453.11	11	9
105	Motif group HL_73247.1 View motif instance in 3D Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F	0.00	-476.86	11	10	Pseudoknot geometry
106	Motif group HL_98870.1 View motif instance in 3D Basepair signature: cWW-tSH-tWW-F-F-F-F-F	0.00	-487.31	12	10
107	Motif group HL_14757.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F	0.00	-574.47	14	12
108	Motif group HL_51921.1 View motif instance in 3D Basepair signature: cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F	0.00	-608.39	15.5	14.5
109	Motif group HL_74055.2 View motif instance in 3D Basepair signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW	0.00	-797.31	11	9
110	Motif group HL_41902.1 View motif instance in 3D Basepair signature: cWW-cWW-cWH-F-F-F-F-F	0.00	-915.32	10	9
111	Motif group HL_70658.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.00	-932.03	9	8
112	Motif group HL_74379.3 View motif instance in 3D Basepair signature: cWW-F-F-cSS-cSS-F-F-F	0.00	-1034.15	9	7
113	Motif group HL_41543.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-1096.84	9	7
114	Motif group HL_86109.1 View motif instance in 3D Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F	0.00	-1197.52	10	8
115	Motif group HL_60266.1 View motif instance in 3D Basepair signature: cWW-cWW-tWH-F-F-F-F	0.00	-1258.71	9	7
116	Motif group HL_68257.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-1350.92	8	7
117	Motif group HL_08602.1 View motif instance in 3D Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F	0.00	-1362.58	10	9
118	Motif group HL_90620.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-cSW-cSH-F	0.00	-1391.92	8.5	7
119	Motif group HL_68767.1 View motif instance in 3D Basepair signature: cWW-cWS-tSH-cWS-F	0.00	-1404.74	10	8	tRNA D-loop
120	Motif group HL_67079.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-1428.38	8	6
121	Motif group HL_93438.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-1430.39	6.5	5
122	Motif group HL_92488.1 View motif instance in 3D Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F	0.00	-1488.63	12.5	11
123	Motif group HL_13971.1 View motif instance in 3D Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F	0.00	-1508.20	11	9
124	Motif group HL_02887.3 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F-F-F-F	0.00	-1568.95	8	6	T-loop with 3 stacked bulged bases
125	Motif group HL_23509.1 View motif instance in 3D Basepair signature: cSH-F-F-F-F-F-F-F-F-F	0.00	-1582.46	9	8
126	Motif group HL_40252.4 View motif instance in 3D Basepair signature: cWW-tSH-cWS-F	0.00	-1589.99	8	7
127	Motif group HL_02581.1 View motif instance in 3D Basepair signature: cWW-tSH-cWS-tSW-F-F-F	0.00	-1670.55	11	10	tRNA D-loop
128	Motif group HL_81545.2 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F-F	0.00	-1741.52	7	5
129	Motif group HL_36335.1 View motif instance in 3D Basepair signature: cWW-F-F-cSS-cSS-F	0.00	-1741.84	8	7
130	Motif group HL_49941.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-1860.16	8.5	7	tRNA D-loop
131	Motif group HL_53504.3 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F-F-F	0.00	-1871.54	8	6
132	Motif group HL_89346.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F	0.00	-1884.82	14	13
133	Motif group HL_20167.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-1891.38	6	4
134	Motif group HL_91939.2 View motif instance in 3D Basepair signature: cWW-tSH-tHH-tWW-F-F-F	0.00	-1921.13	8	7
135	Motif group HL_83808.4 View motif instance in 3D Basepair signature: cWW-tWW-F-F-F	0.00	-1967.35	8	7	Pseudoknot
136	Motif group HL_16991.1 View motif instance in 3D Basepair signature: cWW-cWH-cWH-F-cWH-F	0.00	-1970.28	9	8	G-quadruplex fragment
137	Motif group HL_01962.2 View motif instance in 3D Basepair signature: cWW-tWH-tWH-F	0.00	-1970.42	8	6
138	Motif group HL_18423.1 View motif instance in 3D Basepair signature: cWW-tSH-tHS-F	0.00	-1981.81	8	6.5
139	Motif group HL_98864.1 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F-F-F-F	0.00	-1989.91	7	6	T-loop with unstacked turn
140	Motif group HL_50860.2 View motif instance in 3D Basepair signature: cWW-F-cWH-F-F-F-F	0.00	-2027.73	6	5
141	Motif group HL_05304.3 View motif instance in 3D Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F	0.00	-2072.02	9	7
142	Motif group HL_10456.1 View motif instance in 3D Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F	0.00	-2107.81	14	12
143	Motif group HL_61996.2 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F	0.00	-2119.31	6	5
144	Motif group HL_20743.5 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F	0.00	-2255.58	6	5
145	Motif group HL_97756.2 View motif instance in 3D Basepair signature: cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F	0.00	-2290.97	11	10
146	Motif group HL_04642.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-2301.24	8	6	tRNA D-loop
147	Motif group HL_98252.1 View motif instance in 3D Basepair signature: cWW-tWW-F-F-F-F	0.00	-2400.54	9	7
148	Motif group HL_59564.1 View motif instance in 3D Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F	0.00	-2420.73	16	14
149	Motif group HL_85434.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F-F-F	0.00	-2462.84	8	6
150	Motif group HL_25847.2 View motif instance in 3D Basepair signature: cWW-F-cSH-tHW-F-F-F	0.00	-2475.64	8	7
151	Motif group HL_04171.7 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F-F-F	0.00	-2496.04	8	6
152	Motif group HL_93616.2 View motif instance in 3D Basepair signature: cWW-cWS-F-F-F-F	0.00	-2497.45	8	7	tRNA D-loop
153	Motif group HL_18978.1 View motif instance in 3D Basepair signature: cWW-F-F-tHW-F-F-F	0.00	-2621.12	8	6
154	Motif group HL_75293.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-2640.03	6	5
155	Motif group HL_00317.1 View motif instance in 3D Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F	0.00	-2643.39	16	14
156	Motif group HL_02483.1 View motif instance in 3D Basepair signature: cWW-tWH-F-cSH-F-F-F	0.00	-2648.05	9	8
157	Motif group HL_12758.3 View motif instance in 3D Basepair signature: cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH	0.00	-2671.85	19	18	G-quadruplex
158	Motif group HL_60293.1 View motif instance in 3D Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F	0.00	-2683.73	18	16	G-quadruplex
159	Motif group HL_21400.1 View motif instance in 3D Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH	0.00	-2694.03	18	17	G-quadruplex
160	Motif group HL_66482.1 View motif instance in 3D Basepair signature: cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F	0.00	-2819.27	14	12
161	Motif group HL_07480.2 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F	0.00	-2820.62	8	7
162	Motif group HL_88205.2 View motif instance in 3D Basepair signature: cWW-cWS-tSW-F-F	0.00	-2833.72	7	5.5
163	Motif group HL_89881.5 View motif instance in 3D Basepair signature: cWW-tHW-F-F-F-F-F-F	0.00	-2855.15	8	6
164	Motif group HL_45785.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-cSH-F-F	0.00	-2856.54	9.5	8
165	Motif group HL_45175.1 View motif instance in 3D Basepair signature: cWW-cWS-F-F	0.00	-2858.59	7	5.5	tRNA D-loop
166	Motif group HL_73916.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F	0.00	-2900.50	31	30
167	Motif group HL_29129.3 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F-F	0.00	-2921.43	8	7
168	Motif group HL_84299.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-2928.62	6	4
169	Motif group HL_73183.1 View motif instance in 3D Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F	0.00	-2950.23	11	10	Pseudoknot geometry with G-bulge
170	Motif group HL_11542.1 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F-F-F	0.00	-2987.60	11	9
171	Motif group HL_13529.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-3043.87	5.5	5
172	Motif group HL_33074.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-3075.05	9	8	U1 small nuclear ribonucleoprotein A binding hairpin
173	Motif group HL_89567.2 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-3093.91	7	5
174	Motif group HL_20751.2 View motif instance in 3D Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F	0.00	-3168.40	10	9
175	Motif group HL_87463.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F-F	0.00	-3197.64	7	6
176	Motif group HL_99769.3 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F	0.00	-3204.40	8	6.5
177	Motif group HL_53454.2 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F-F	0.00	-3256.79	7	6
178	Motif group HL_99324.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F	0.00	-3257.95	13	11
179	Motif group HL_85461.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F	0.00	-3292.61	15	14
180	Motif group HL_35354.1 View motif instance in 3D Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH	0.00	-3338.31	19	17
181	Motif group HL_23010.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-3366.15	9	7
182	Motif group HL_10540.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-3379.88	6	5
183	Motif group HL_34964.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-3438.89	8	7
184	Motif group HL_07903.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F	0.00	-3464.14	11	10
185	Motif group HL_20811.4 View motif instance in 3D Basepair signature: cWW-cWS-F	0.00	-3465.21	5.5	4.5	tRNA D-loop
186	Motif group HL_58224.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-3496.42	8	6
187	Motif group HL_88364.2 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F	0.00	-3565.90	12	11
188	Motif group HL_04641.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-3649.07	8	7
189	Motif group HL_50851.1 View motif instance in 3D Basepair signature: cWW-cWH-cWH-cWH-cWH-F	0.00	-3715.06	10	9	G-quadruplex fragment
190	Motif group HL_64292.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-3764.31	13	11
191	Motif group HL_72628.1 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F	0.00	-3821.41	7	6
192	Motif group HL_63355.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F	0.00	-3826.38	10	9
193	Motif group HL_81538.2 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F	0.00	-3854.17	5	3.5	GNRA with tandem sheared
194	Motif group HL_16398.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-3868.40	10	8
195	Motif group HL_24792.1 View motif instance in 3D Basepair signature: cWW-cWS-F-F-F	0.00	-3906.88	8	7
196	Motif group HL_80599.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-3914.74	7	5
197	Motif group HL_04725.1 View motif instance in 3D Basepair signature: cWW-cWS-cWW-cWW-cWS	0.00	-3978.61	9	8
198	Motif group HL_88558.1 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F-F-F-F	0.00	-3979.12	9	7.5
199	Motif group HL_31581.6 View motif instance in 3D Basepair signature: cWW-cHS-F-F-F-cWW-F-F-F	0.00	-4021.90	9	8
200	Motif group HL_47854.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-4052.93	7	6
201	Motif group HL_38649.1 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F-F-F	0.00	-4066.57	8	7
202	Motif group HL_67407.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-4068.81	8	7
203	Motif group HL_81312.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.00	-4087.07	9	7.5
204	Motif group HL_23115.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-4105.89	9	8	tRNA D-loop
205	Motif group HL_91503.7 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-4124.72	8	7
206	Motif group HL_89893.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-4209.20	7	6
207	Motif group HL_19210.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-4279.54	7	6
208	Motif group HL_80411.1 View motif instance in 3D Basepair signature: cWW-F-cSH-F-F-F-F	0.00	-4310.56	9	8	tRNA D-loop
209	Motif group HL_55305.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-4322.71	9	7
210	Motif group HL_01255.1 View motif instance in 3D Basepair signature: F-F-F-F-F-F-F-F	0.00	-4327.45	9	7
211	Motif group HL_29762.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-4347.01	8	6
212	Motif group HL_37369.2 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F	0.00	-4415.33	6	5
213	Motif group HL_27483.1 View motif instance in 3D Basepair signature: cWW-F	0.00	-4452.88	6	5.5
214	Motif group HL_15118.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.00	-4455.10	9	8
215	Motif group HL_94376.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.00	-4516.85	8	7	Pseudoknot geometry
216	Motif group HL_93383.1 View motif instance in 3D Basepair signature: cWW-cSH-F-F-F-F-F-F	0.00	-4542.91	7	6
217	Motif group HL_93135.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-4567.44	8	7	Pseudoknot
218	Motif group HL_08510.1 View motif instance in 3D Basepair signature: cWW-F-F-cSH-F-F	0.00	-4587.57	8	6
219	Motif group HL_50779.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-4597.42	8	6
220	Motif group HL_69139.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-4612.71	8	7
221	Motif group HL_47732.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-4662.75	10	8
222	Motif group HL_78284.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F	0.00	-4673.21	9	7
223	Motif group HL_35677.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-4775.86	7	5
224	Motif group HL_29958.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-4843.65	11	9
225	Motif group HL_38046.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-4853.59	7	6
226	Motif group HL_85367.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-4922.31	6	4.5
227	Motif group HL_70751.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.00	-4994.34	8	6.5
228	Motif group HL_30068.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-5089.08	5	5
229	Motif group HL_68572.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-5095.75	10	9
230	Motif group HL_27670.2 View motif instance in 3D Basepair signature: cWW-tWH-F-F	0.00	-5107.65	5	4	T-loop with unstacked turn
231	Motif group HL_36684.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.00	-5131.66	7.5	6
232	Motif group HL_50418.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.00	-5249.67	8	6
233	Motif group HL_74292.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-5255.48	8	7
234	Motif group HL_38808.1 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-5522.11	6	5
235	Motif group HL_02817.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-5523.66	6	5
236	Motif group HL_80362.1 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-5527.27	7	6
237	Motif group HL_99040.1 View motif instance in 3D Basepair signature: F-F-F-F-F-F	0.00	-5663.40	7	6
238	Motif group HL_00914.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-5801.06	7	5
239	Motif group HL_20781.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-5809.37	9	7
240	Motif group HL_99867.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-5835.40	7	5
241	Motif group HL_42998.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-6365.52	6	4.5
242	Motif group HL_12870.1 View motif instance in 3D Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F	0.00	-6427.86	10	9
243	Motif group HL_09452.1 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-6631.41	6	5
244	Motif group HL_28791.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-6787.04	7	6
245	Motif group HL_58539.1 View motif instance in 3D Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F	0.00	-6791.91	12	11
246	Motif group HL_15574.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-6854.69	6	5
247	Motif group HL_80241.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-6881.81	6	5
248	Motif group HL_97983.1 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-7420.98	7.5	6
249	Motif group HL_77600.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-7541.57	6	4
250	Motif group HL_30680.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-7723.17	5	4	Pseudoknot geometry
251	Motif group HL_59735.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-8430.21	5.5	5
252	Motif group HL_07951.3 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-9999.00	7	6	tRNA D-loop
253	Motif group HL_09260.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-9999.00	8.5	7.5	tRNA D-loop