HL_33239.17

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-6
1	HL_4FRN_005	4FRN	0.7791	0	T-loop with 2 bulged bases not stacked	B	Cobalamin riboswitch aptamer domain	G	28	U	29	G	30	U	31	A	32	A	33	U	34	U	35	C	36	cWW	tWH
2	HL_4FRG_001	4FRG	0.7563	0	T-loop with 2 bulged bases not stacked	B	cobalamin riboswitch aptamer domain	G	28	U	29	G	30	A	31	A	32	A	33	U	34	U	35	C	36	cWW	tWH
3	HL_6DN2_003	6DN2	0.7696	0	T-loop with 2 bulged bases not stacked	Y	RNA (56-MER)	G	68	U	69	G	70	A	71	A	72	A	73	U	74	U	75	C	76	cWW	tWH
4	HL_5C45_003	5C45	0.7864	0	T-loop with 2 bulged bases not stacked	Y	FMN Riboswitch	G	68	U	69	G	70	A	71	A	72	A	73	U	74	U	75	C	76	cWW	tWH
5	HL_6DN2_001	6DN2	0.7665	0	T-loop with 2 bulged bases not stacked	X	RNA RIBOSWITCH	G	17	U	18	G	19	A	20	A	21	A	22	U	23	U	24	C	25	cWW	tWH
6	HL_5C45_001	5C45	0.7534	0	T-loop with 2 bulged bases not stacked	X	FMN Riboswitch	G	17	U	18	G	19	A	20	A	21	A	22	U	23	U	24	C	25	cWW	tWH
7	HL_3F2X_001	3F2X	0.7369	0	T-loop with 2 bulged bases not stacked	X	FMN riboswitch	G	17	U	18	G	19	A	20	A	21	A	22	U	23	U	24	C	25	cWW	tWH
8	HL_3F2X_004	3F2X	0.7625	0	T-loop with 2 bulged bases not stacked	X	FMN riboswitch	G	68	U	69	G	70	A	71	A	72	A	73	U	74	U	75	C	76	cWW	tWH
9	HL_3VJR_001	3VJR	0.5816	0	Other HL	B	tRNA CCA-acceptor	G	13	U	14	U	15	C	16	G	17	A	18	U	19	C	20	C	21	cWW	tWH
10	HL_6NWY_035	6NWY	0.3469	0		QV	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
11	HL_4GXY_002	4GXY	0.3920	0	T-loop with 2 stacked bulged bases	A	Adenosylcobalamin riboswitch	G	49	U	50	G	51	C	52	A	53	A	54	G	55	U	56	C	57	cWW	tWH
12	HL_6JQ6_003	6JQ6	0.2973	0	T-loop with 2 stacked bulged bases	U	RNA (81-MER)	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
13	HL_6JQ5_001	6JQ5	0.3122	0	T-loop with 2 stacked bulged bases	A	RNA (82-MER)	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
14	HL_6JQ5_003	6JQ5	0.3033	0	T-loop with 2 stacked bulged bases	B	RNA (82-MER)	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
15	HL_3IGI_001	3IGI	0.2705	0	T-loop with 2 stacked bulged bases	A	Group IIC intron	G	30	U	31	G	32	A	33	G	34	A	35	G	36	U	37	C	38	cWW	tWH
16	HL_1N78_003	1N78	0.1710	0	T-loop with 2 stacked bulged bases	C	tRNA(Glu)	G	553	U	554	U	555	C	556	G	557	A	558	U	559	U	560	C	561	cWW	tWH
17	HL_3EPH_003	3EPH	0.1974	0	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
18	HL_3TUP_003	3TUP	0.2182	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	ntWH
19	HL_3AM1_004	3AM1	0.2550	0	T-loop with 2 stacked bulged bases	B	ASL-truncated tRNA	G	59	U	60	U	61	C	62	G	63	A	64	U	65	U	66	C	67	cWW	tWH
20	HL_3FOZ_006	3FOZ	0.2331	0	T-loop with 2 stacked bulged bases	D	tRNA(Phe)	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
21	HL_3RG5_008	3RG5	0.1528	0	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	A	57	A	58	U	59	U	60	C	61	cWW	tWH
22	HL_3W3S_004	3W3S	0.1781	0	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
23	HL_3ADD_004	3ADD	0.2117	0	T-loop with 2 stacked bulged bases	C	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	A	57	A	58	U	59	U	60	C	61	cWW	tWH
24	HL_5WWT_002	5WWT	0.2089	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
25	HL_4X4V_001	4X4V	0.1750	0	T-loop with 2 stacked bulged bases	B	Human MenBeta minihelix ending in CCACC	G	12	U	13	U	14	C	15	G	16	A	17	G	18	U	19	C	20	cWW	tWH
26	HL_2DU3_003	2DU3	0.1660	0	T-loop with 2 stacked bulged bases	D	tRNA	G	952	U	953	U	954	C	955	G	956	A	957	A	958	U	959	C	960	cWW	tWH
27	HL_4LCK_003	4LCK	0.1439	0	T-loop with 2 stacked bulged bases	B	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
28	HL_4MGN_004	4MGN	0.1811	0	T-loop with 2 stacked bulged bases	B	tRNA-glycine	G	52	U	53	U	54	C	55	G	56	A	57	G	58	U	59	C	60	cWW	tWH
29	HL_2DER_006	2DER	0.2227	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
30	HL_2D6F_006	2D6F	0.1806	0	T-loop with 2 stacked bulged bases	F	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	C	959	U	960	C	961	cWW	tWH
31	HL_5UD5_003	5UD5	0.2108	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	A	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
32	HL_1WZ2_008	1WZ2	0.1730	0	T-loop with 2 stacked bulged bases	D	tRNA	G	965	U	966	U	967	C	968	G	969	A	970	A	971	U	972	C	973	cWW	tWH
33	HL_4P5J_003	4P5J	0.1407	0	T-loop with 2 stacked bulged bases	A	tRNA-like 3' UTR element	G	46	U	47	G	48	C	49	A	50	A	51	C	52	U	53	C	54	cWW	tWH
34	HL_2ZZM_004	2ZZM	0.1199	0	T-loop with 2 stacked bulged bases	B	RNA (84-MER)	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
35	HL_5X6B_003	5X6B	0.1127	0	T-loop with 2 stacked bulged bases	P	tRNA	G	52	U	53	U	54	C	55	A	56	A	57	A	58	U	59	C	60	cWW	tWH
36	HL_3WQY_003	3WQY	0.1212	0	T-loop with 2 stacked bulged bases	C	tRNA	G	1653	U	1654	U	1655	C	1656	A	1657	A	1658	A	1659	U	1660	C	1661	cWW	tWH
37	HL_2ZZN_006	2ZZN	0.1199	0	T-loop with 2 stacked bulged bases	D	RNA (71-MER)	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
38	HL_6JXM_003	6JXM	0.1303	0	T-loop with 2 stacked bulged bases	B	tRNA	G	74	U	75	U	76	C	77	G	78	A	79	G	80	U	81	C	82	cWW	tWH
39	HL_6UFM_003	6UFM	0.1339	0	T-loop with 2 stacked bulged bases	A	tRNA	G	54	U	55	U	56	C	57	G	58	A	59	G	60	U	61	C	62	cWW	tWH
40	HL_3AL0_003	3AL0	0.1394	0	T-loop with 2 stacked bulged bases	E	tRNAGln	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
41	HL_4JXZ_003	4JXZ	0.1113	0	T-loop with 2 stacked bulged bases	B	RNA (71-MER)	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
42	HL_5HR7_006	5HR7	0.1149	0	T-loop with 2 stacked bulged bases	D	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
43	HL_5HR6_003	5HR6	0.1003	0	T-loop with 2 stacked bulged bases	C	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
44	HL_1QTQ_003	1QTQ	0.1155	0	T-loop with 2 stacked bulged bases	B	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
45	HL_6PMO_005	6PMO	0.1117	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
46	HL_5AXM_003	5AXM	0.0770	0	T-loop with 2 stacked bulged bases	P	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
47	HL_4YCO_003	4YCO	0.0000	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
48	HL_3ZGZ_003	3ZGZ	0.0773	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
49	HL_4YYE_003	4YYE	0.0835	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
50	HL_4RDX_003	4RDX	0.1145	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
51	HL_2ZUE_003	2ZUE	0.1058	0	T-loop with 2 stacked bulged bases	B	tRNA-Arg	G	953	U	954	U	955	C	956	A	957	A	958	A	959	U	960	C	961	cWW	tWH
52	HL_1J1U_003	1J1U	0.0828	0	T-loop with 2 stacked bulged bases	B	tRNA(Tyr)	G	554	U	555	U	556	C	557	A	558	A	559	A	560	U	561	C	562	cWW	tWH
53	HL_1QU2_003	1QU2	0.1021	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
54	HL_5WT1_003	5WT1	0.1304	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
55	HL_4TUE_035	4TUE	0.1423	0	T-loop with 2 stacked bulged bases	QV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	ncWW	tWH
56	HL_4WJ4_003	4WJ4	0.1353	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
57	HL_2AZX_006	2AZX	0.1533	0	T-loop with 2 stacked bulged bases	D	72-MER	G	553	U	554	U	555	C	556	G	557	A	558	A	559	U	560	C	561	ncWW	tWH
58	HL_5AH5_008	5AH5	0.1347	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
59	HL_2BTE_004	2BTE	0.1700	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
60	HL_4V9Q_215	4V9Q	0.1604	0	T-loop with 2 stacked bulged bases	DV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
61	HL_4WT8_217	4WT8	0.1519	0	T-loop with 2 stacked bulged bases	D4	tRNA	G	54	U	55	U	56	C	57	A	58	A	59	A	60	U	61	C	62	cWW	tWH
62	HL_5B63_004	5B63	0.1492	0	T-loop with 2 stacked bulged bases	D	tRNA	G	954	U	955	U	956	C	957	G	958	A	959	A	960	U	961	C	962	cWW	tWH
63	HL_4GCW_002	4GCW	0.1457	0	T-loop with 2 stacked bulged bases	B	TRNA(THR)	G	53	U	54	U	55	C	56	G	57	A	58	G	59	C	60	C	61	cWW	tWH
64	HL_1U0B_003	1U0B	0.1606	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
65	HL_3AMU_003	3AMU	0.1702	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
66	HL_3WFS_003	3WFS	0.1676	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
67	HL_3ICQ_005	3ICQ	0.2507	0	T-loop with 2 stacked bulged bases	E	RNA (62-MER)	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
68	HL_4V8Q_110	4V8Q	0.2242	0	T-loop with 2 stacked bulged bases	BY	SsrA	G	66	U	67	U	68	C	69	G	70	A	71	C	72	U	73	C	74	cWW	ntWH
69	HL_6MJ0_009	6MJ0	0.1860	0	T-loop with 2 stacked bulged bases	B	tRNA-like 3' UTR element	G	66	U	67	G	68	C	69	A	70	A	71	C	72	U	73	C	74	cWW	tWH
70	HL_5Y85_003	5Y85	0.2815	0	T-loop with 2 stacked bulged bases	D	DNA/RNA (50-MER)	G	11	U	12	G	13	C	14	A	15	A	16	G	17	U	18	C	19	cWW	tWH
71	HL_4V8N_145	4V8N	0.2489	0	T-loop with 2 stacked bulged bases	CV	tRNA	G	55	U	56	U	57	C	58	G	59	A	60	A	61	U	62	C	63	cWW	tWH
72	HL_5TBW_014	5TBW	0.3194	1	T-loop with 2 stacked bulged bases	1	LSU rRNA	U	640	C	641	U	642	U	643	G	644	A	645	A	646	A	647	A	649	cWW
73	HL_7RQB_018	7RQB	0.3393	1		1A	LSU rRNA	U	566	A	567	U	568	U	569	G	570	A	571	A	572	G	573	A	575	cWW
74	HL_7A0S_018	7A0S	0.3385	1		X	LSU rRNA	U	575	A	576	U	577	U	578	G	579	A	580	A	581	G	582	A	584	cWW
75	HL_5J7L_150	5J7L	0.2813	1	T-loop with 2 stacked bulged bases	DA	LSU rRNA	U	566	U	567	U	568	U	569	G	570	U	571	A	572	U	573	A	575	cWW
76	HL_4WF9_018	4WF9	0.2951	1	T-loop with 2 stacked bulged bases	X	LSU rRNA	U	609	U	610	U	611	U	612	G	613	U	614	A	615	G	616	A	618	cWW
77	HL_2ZNI_003	2ZNI	0.4413	0	T-loop with 2 stacked bulged bases	C	bacterial tRNA	G	53	U	54	G	55	A	56	A	57	A	58	C	59	U	60	C	61	cWW	tWH
78	HL_4V90_034	4V90	0.3623	0	T-loop with 2 stacked bulged bases	AV	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
79	HL_5E6M_003	5E6M	0.4134	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
80	HL_4QEI_003	4QEI	0.4102	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
81	HL_4V9K_035	4V9K	0.3794	0	T-loop with 2 stacked bulged bases	AW	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
82	HL_6CU1_001	6CU1	0.3759	0	T-loop with 2 stacked bulged bases	A	Y RNA-like	G	24	U	25	U	26	C	27	G	28	A	29	G	30	A	31	C	32	cWW	tWH
83	HL_5J7L_165	5J7L	0.4239	0	T-loop with 2 stacked bulged bases	DA	LSU rRNA	G	1281	U	1282	G	1283	A	1284	A	1285	A	1286	A	1287	G	1288	C	1289	cWW	tWH
84	HL_5TBW_031	5TBW	0.4279	0	T-loop with 2 stacked bulged bases	1	LSU rRNA	A	1462	U	1463	G	1464	A	1465	G	1466	A	1467	A	1468	C	1469	U	1470	cWW	tWH
85	HL_4V9F_034	4V9F	0.4520	0	T-loop with 2 stacked bulged bases	0	LSU rRNA	G	1387	U	1388	G	1389	A	1390	G	1391	A	1392	A	1393	C	1394	C	1395	cWW	tWH
86	HL_4WF9_032	4WF9	0.4326	0	T-loop with 2 stacked bulged bases	X	LSU rRNA	G	1318	U	1319	G	1320	A	1321	G	1322	A	1323	A	1324	U	1325	C	1326	cWW	tWH
87	HL_7RQB_033	7RQB	0.3914	0		1A	LSU rRNA	G	1281	U	1282	G	1283	A	1284	G	1285	A	1286	A	1287	U	1288	C	1289	cWW	tWH
88	HL_7A0S_032	7A0S	0.4011	0		X	LSU rRNA	G	1294	U	1295	G	1296	A	1297	G	1298	A	1299	A	1300	U	1301	C	1302	cWW	tWH
89	HL_5T5A_001	5T5A	0.4300	0	T-loop with 2 stacked bulged bases	A	DNA/RNA (71-MER)	G	21	U	22	G	23	C	24	A	25	A	26	G	27	C	28	C	29	cWW	tWH
90	HL_3OVB_001	3OVB	0.4396	0	T-loop with 2 stacked bulged bases	C	RNA (35-MER)	G	12	U	13	U	14	C	15	A	16	A	17	G	18	U	19	C	20	cWW	tWH
91	HL_2DRA_001	2DRA	0.3794	0	T-loop with 2 stacked bulged bases	B	tRNA (34-MER)	G	12	U	13	U	14	C	15	G	16	A	17	U	18	U	19	C	20	cWW	tWH
92	HL_1GAX_006	1GAX	0.4009	0	T-loop with 2 stacked bulged bases	D	TRNA(VAL)	G	952	U	953	U	954	C	955	A	956	A	957	G	958	U	959	C	960	cWW	tWH
93	HL_2CSX_003	2CSX	0.3315	0	T-loop with 2 stacked bulged bases	C	RNA (75-MER)	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
94	HL_1J2B_002	1J2B	0.4065	0	Other HL	C	tRNA(Val)	G	954	U	955	U	956	C	957	A	958	A	959	G	960	U	961	C	962	cWW	tWH
95	HL_6UFG_008	6UFG	0.4468	0	T-loop with 2 stacked bulged bases	B	tRNA	G	54	U	55	U	56	C	57	A	58	A	59	G	60	U	61	C	62	cWW	tWH

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUCGAAUC	15
GUUCAAAUC	12
GUUCGAUUC	11
GUUCAAGUC	9
GUGAAAUUC	7
GUUCGAGUC	7
GUGAGAAUC	6
GUUCGAUCC	4
GUUCGACUC	3
GUGCAAGUC	2
GUUCAAUUC	2
GUGCAACUC	2
UAUUGAAGCA	2
GUGUAAUUC	1
GUGAGAGUC	1
GUUAGAUUC	1
GUUCGAGCC	1
UCUUGAAACA	1
UUUUGUAUAA	1
UUUUGUAGAA	1
GUGAAACUC	1
GUUCGAGAC	1
GUGAAAAGC	1
AUGAGAACU	1
GUGAGAACC	1
GUGCAAGCC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCGAAU	15
UUCAAAU	12
UUCGAUU	11
UUCAAGU	9
UGAAAUU	7
UUCGAGU	7
UGAGAAU	6
UUCGAUC	4
UUCGACU	3
UGCAAGU	2
UUCAAUU	2
UGCAACU	2
AUUGAAGC	2
UGAGAAC	2
UGUAAUU	1
UGAGAGU	1
UUAGAUU	1
UUCGAGC	1
CUUGAAAC	1
UUUGUAUA	1
UUUGUAGA	1
UGAAACU	1
UUCGAGA	1
UGAAAAG	1
UGCAAGC	1

Release history

Release	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_33239.17 Version HL_33239.17 of this group appears in releases 3.63 to 3.76 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_33239.17 Version HL_33239.17 of this group appears in releases 3.63 to 3.76

Download

Csv

Json