6VZ2 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VZ2_001 | No text annotation | ||
| HL_6VZ2_002 | tRNA anticodon loop | ||
| HL_6VZ2_003 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ2_004 | No text annotation | ||
| HL_6VZ2_005 | No text annotation | ||
| HL_6VZ2_006 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ2_007 | No text annotation | ||
| HL_6VZ2_008 | No text annotation | ||
| HL_6VZ2_009 | GNRA | ||
| HL_6VZ2_010 | GNRA | ||
| HL_6VZ2_109 | No text annotation | ||
| HL_6VZ2_011 | No text annotation | ||
| HL_6VZ2_012 | GNRA related | ||
| HL_6VZ2_013 | GNRA | ||
| HL_6VZ2_014 | No text annotation | ||
| HL_6VZ2_015 | UNCG | ||
| HL_6VZ2_016 | GNRA | ||
| HL_6VZ2_017 | UNCG | ||
| HL_6VZ2_018 | GNRA wlth extra near cWW | ||
| HL_6VZ2_019 | No text annotation | ||
| HL_6VZ2_020 | GNRA-like with tWH | ||
| HL_6VZ2_021 | No text annotation | ||
| HL_6VZ2_022 | GNRA | ||
| HL_6VZ2_023 | No text annotation | ||
| HL_6VZ2_024 | No text annotation | ||
| HL_6VZ2_025 | GNRA | ||
| HL_6VZ2_026 | GNRA | ||
| HL_6VZ2_027 | No text annotation | ||
| HL_6VZ2_028 | GNRA | ||
| HL_6VZ2_029 | GNRA | ||
| HL_6VZ2_030 | T-loop related | ||
| HL_6VZ2_110 | No text annotation | ||
| HL_6VZ2_031 | No text annotation | ||
| HL_6VZ2_032 | GNRA | ||
| HL_6VZ2_033 | GNRA | ||
| HL_6VZ2_034 | T-loop with 3 stacked bulged bases | ||
| HL_6VZ2_035 | No text annotation | ||
| HL_6VZ2_036 | UNCG | ||
| HL_6VZ2_037 | GNRA | ||
| HL_6VZ2_038 | No text annotation | ||
| HL_6VZ2_039 | No text annotation | ||
| HL_6VZ2_040 | No text annotation | ||
| HL_6VZ2_041 | UNCG | ||
| HL_6VZ2_042 | No text annotation | ||
| HL_6VZ2_043 | No text annotation | ||
| HL_6VZ2_044 | No text annotation | ||
| HL_6VZ2_045 | No text annotation | ||
| HL_6VZ2_046 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ2_047 | No text annotation | ||
| HL_6VZ2_048 | T-loop with unstacked turn | ||
| HL_6VZ2_049 | No text annotation | ||
| HL_6VZ2_050 | Pseudoknot geometry | ||
| HL_6VZ2_051 | GNRA | ||
| HL_6VZ2_052 | GNRA | ||
| HL_6VZ2_053 | No text annotation | ||
| HL_6VZ2_054 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ2_055 | No text annotation | ||
| HL_6VZ2_056 | GNRA | ||
| HL_6VZ2_057 | No text annotation | ||
| HL_6VZ2_058 | GNRA wlth tandem sheared | ||
| HL_6VZ2_059 | No text annotation | ||
| HL_6VZ2_060 | No text annotation | ||
| HL_6VZ2_061 | No text annotation | ||
| HL_6VZ2_111 | No text annotation | ||
| HL_6VZ2_062 | No text annotation | ||
| HL_6VZ2_063 | No text annotation | ||
| HL_6VZ2_064 | No text annotation | ||
| HL_6VZ2_065 | No text annotation | ||
| HL_6VZ2_066 | GNRA wlth tandem sheared | ||
| HL_6VZ2_067 | No text annotation | ||
| HL_6VZ2_068 | GNRA | ||
| HL_6VZ2_069 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ2_070 | Pseudoknot geometry with 3' bulge | ||
| HL_6VZ2_071 | GNRA | ||
| HL_6VZ2_072 | No text annotation | ||
| HL_6VZ2_073 | Mini UNCG with extended bulge | ||
| HL_6VZ2_074 | Pseudoknot geometry with 3' bulge | ||
| HL_6VZ2_075 | UNCG | ||
| HL_6VZ2_076 | Mini UNCG | ||
| HL_6VZ2_077 | No text annotation | ||
| HL_6VZ2_078 | GNRA | ||
| HL_6VZ2_079 | UNCG | ||
| HL_6VZ2_112 | No text annotation | ||
| HL_6VZ2_080 | No text annotation | ||
| HL_6VZ2_081 | No text annotation | ||
| HL_6VZ2_082 | No text annotation | ||
| HL_6VZ2_083 | GNRA related | ||
| HL_6VZ2_084 | GNRA variation | ||
| HL_6VZ2_085 | No text annotation | ||
| HL_6VZ2_086 | No text annotation | ||
| HL_6VZ2_087 | No text annotation | ||
| HL_6VZ2_088 | No text annotation | ||
| HL_6VZ2_089 | No text annotation | ||
| HL_6VZ2_090 | No text annotation | ||
| HL_6VZ2_091 | No text annotation | ||
| HL_6VZ2_092 | No text annotation | ||
| HL_6VZ2_114 | No text annotation | ||
| HL_6VZ2_093 | Pseudoknot geometry | ||
| HL_6VZ2_094 | GNRA | ||
| HL_6VZ2_095 | GNRA | ||
| HL_6VZ2_096 | No text annotation | ||
| HL_6VZ2_097 | No text annotation | ||
| HL_6VZ2_098 | GNRA variation | ||
| HL_6VZ2_099 | No text annotation | ||
| HL_6VZ2_100 | GNRA | ||
| HL_6VZ2_101 | GNRA | ||
| HL_6VZ2_102 | Ribsomal LSU H95 | ||
| HL_6VZ2_103 | No text annotation | ||
| HL_6VZ2_104 | No text annotation | ||
| HL_6VZ2_115 | UNCG variation | ||
| HL_6VZ2_105 | No text annotation | ||
| HL_6VZ2_106 | GNRA | ||
| HL_6VZ2_113 | No text annotation | ||
| HL_6VZ2_107 | No text annotation | ||
| HL_6VZ2_108 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VZ2_186 | No text annotation | ||
| IL_6VZ2_187 | No text annotation | ||
| IL_6VZ2_188 | No text annotation | ||
| IL_6VZ2_189 | No text annotation | ||
| IL_6VZ2_190 | No text annotation | ||
| IL_6VZ2_001 | Single bulged G | ||
| IL_6VZ2_002 | Single bulged A | ||
| IL_6VZ2_003 | No text annotation | ||
| IL_6VZ2_004 | Minor groove platform | ||
| IL_6VZ2_005 | Multiple bulged bases | ||
| IL_6VZ2_006 | Minor groove platform with extra cWW | ||
| IL_6VZ2_007 | Minor groove platform | ||
| IL_6VZ2_191 | Single bulged G | ||
| IL_6VZ2_008 | Single bulged G, near cWW | ||
| IL_6VZ2_009 | Isolated non-canonical cWW pair | ||
| IL_6VZ2_010 | Minor groove platform related | ||
| IL_6VZ2_011 | Isolated cWH basepair | ||
| IL_6VZ2_192 | No text annotation | ||
| IL_6VZ2_012 | tWH-tWH-tHW-tHW | ||
| IL_6VZ2_013 | No text annotation | ||
| IL_6VZ2_014 | Kink-turn with non-sequential stacking | ||
| IL_6VZ2_015 | No text annotation | ||
| IL_6VZ2_016 | C-loop | ||
| IL_6VZ2_017 | Single bulged U | ||
| IL_6VZ2_018 | C-loop | ||
| IL_6VZ2_019 | Single bulged G | ||
| IL_6VZ2_020 | No text annotation | ||
| IL_6VZ2_021 | No text annotation | ||
| IL_6VZ2_022 | tSH-tHW-tWW | ||
| IL_6VZ2_023 | No text annotation | ||
| IL_6VZ2_024 | SSU/LSU pseudoknot | ||
| IL_6VZ2_025 | Kink-turn related | ||
| IL_6VZ2_026 | No text annotation | ||
| IL_6VZ2_027 | tSH-tHW-tHS | ||
| IL_6VZ2_028 | Major groove platform | ||
| IL_6VZ2_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6VZ2_030 | No text annotation | ||
| IL_6VZ2_031 | Major groove platform; stack outside cWW | ||
| IL_6VZ2_032 | Single stack bend | ||
| IL_6VZ2_033 | Tandem non-canonical cWW pairs | ||
| IL_6VZ2_034 | No text annotation | ||
| IL_6VZ2_035 | Kink-turn | ||
| IL_6VZ2_036 | Left turn | ||
| IL_6VZ2_037 | tSH-tHW-tHS | ||
| IL_6VZ2_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6VZ2_039 | Single bulged A | ||
| IL_6VZ2_040 | Single bulged G | ||
| IL_6VZ2_041 | Minor groove platform | ||
| IL_6VZ2_042 | No text annotation | ||
| IL_6VZ2_043 | Minor groove platform | ||
| IL_6VZ2_044 | No text annotation | ||
| IL_6VZ2_045 | No text annotation | ||
| IL_6VZ2_046 | Single bulged U | ||
| IL_6VZ2_047 | Not an internal loop | ||
| IL_6VZ2_048 | Isolated cWS basepair | ||
| IL_6VZ2_049 | Minor groove platform | ||
| IL_6VZ2_050 | Single bulged U | ||
| IL_6VZ2_051 | Isolated non-canonical cWW pair | ||
| IL_6VZ2_052 | No text annotation | ||
| IL_6VZ2_053 | Minor groove platform | ||
| IL_6VZ2_054 | No text annotation | ||
| IL_6VZ2_055 | No text annotation | ||
| IL_6VZ2_056 | 180 degree turn | ||
| IL_6VZ2_193 | No text annotation | ||
| IL_6VZ2_057 | Double sheared with non-canonical cWW | ||
| IL_6VZ2_058 | No text annotation | ||
| IL_6VZ2_059 | No text annotation | ||
| IL_6VZ2_060 | No text annotation | ||
| IL_6VZ2_061 | Partly complementary | ||
| IL_6VZ2_062 | Isolated non-canonical cWW pair | ||
| IL_6VZ2_063 | Double sheared | ||
| IL_6VZ2_064 | Triple sheared related | ||
| IL_6VZ2_065 | Single bulged A | ||
| IL_6VZ2_066 | No text annotation | ||
| IL_6VZ2_067 | Triple sheared with non-canonical cWW | ||
| IL_6VZ2_068 | Single bulged A | ||
| IL_6VZ2_069 | Minor groove platform | ||
| IL_6VZ2_070 | No text annotation | ||
| IL_6VZ2_071 | Single stack bend | ||
| IL_6VZ2_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VZ2_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6VZ2_074 | No text annotation | ||
| IL_6VZ2_075 | No text annotation | ||
| IL_6VZ2_076 | No text annotation | ||
| IL_6VZ2_077 | No text annotation | ||
| IL_6VZ2_078 | Double sheared | ||
| IL_6VZ2_079 | Isolated non-canonical cWW pair | ||
| IL_6VZ2_080 | AAA cross-strand stack | ||
| IL_6VZ2_081 | No text annotation | ||
| IL_6VZ2_082 | tHW-tHW cross-strand stack | ||
| IL_6VZ2_083 | Single bulged A | ||
| IL_6VZ2_084 | Single bulged G | ||
| IL_6VZ2_085 | Triple sheared | ||
| IL_6VZ2_086 | Major groove platform | ||
| IL_6VZ2_087 | Single stack bend | ||
| IL_6VZ2_088 | Single stack bend | ||
| IL_6VZ2_089 | Multiple bulged bases | ||
| IL_6VZ2_090 | 90 degree turn | ||
| IL_6VZ2_194 | No text annotation | ||
| IL_6VZ2_091 | Stack outside cWW | ||
| IL_6VZ2_092 | Single stack bend | ||
| IL_6VZ2_195 | No text annotation | ||
| IL_6VZ2_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6VZ2_094 | Single bulged G | ||
| IL_6VZ2_095 | C-loop with bulged stacked A's | ||
| IL_6VZ2_096 | Isolated non-canonical cWW pair | ||
| IL_6VZ2_097 | Double sheared with non-canonical cWW | ||
| IL_6VZ2_196 | No text annotation | ||
| IL_6VZ2_098 | No text annotation | ||
| IL_6VZ2_099 | Single bulged C | ||
| IL_6VZ2_100 | UAA/GAN | ||
| IL_6VZ2_101 | SSU/LSU pseudoknot | ||
| IL_6VZ2_102 | Single bulged U | ||
| IL_6VZ2_103 | Kink-turn related | ||
| IL_6VZ2_104 | No text annotation | ||
| IL_6VZ2_105 | Isolated non-canonical cWW pair | ||
| IL_6VZ2_106 | Tandem non-canonical cWW pairs | ||
| IL_6VZ2_107 | Kink-turn | ||
| IL_6VZ2_197 | No text annotation | ||
| IL_6VZ2_108 | No text annotation | ||
| IL_6VZ2_109 | No text annotation | ||
| IL_6VZ2_110 | Isolated cWS basepair | ||
| IL_6VZ2_111 | No text annotation | ||
| IL_6VZ2_112 | Kink-turn | ||
| IL_6VZ2_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VZ2_114 | Major groove platform; stack outside cWW | ||
| IL_6VZ2_115 | C-loop | ||
| IL_6VZ2_116 | UAA/GAN | ||
| IL_6VZ2_117 | tSH-tHW-tHS | ||
| IL_6VZ2_118 | Single stack bend | ||
| IL_6VZ2_119 | Single stack bend | ||
| IL_6VZ2_198 | No text annotation | ||
| IL_6VZ2_120 | No text annotation | ||
| IL_6VZ2_121 | UAA/GAN | ||
| IL_6VZ2_122 | Tandem non-canonical cWW pairs | ||
| IL_6VZ2_123 | tSH-tHW | ||
| IL_6VZ2_124 | Single bulged U | ||
| IL_6VZ2_125 | No text annotation | ||
| IL_6VZ2_126 | tSH-tHW-tHS | ||
| IL_6VZ2_127 | No text annotation | ||
| IL_6VZ2_202 | 180 degree turn | ||
| IL_6VZ2_128 | Single bulged A | ||
| IL_6VZ2_129 | UAA/GAN variation | ||
| IL_6VZ2_130 | No text annotation | ||
| IL_6VZ2_131 | Isolated tWW turn | ||
| IL_6VZ2_132 | Major groove platform; stack outside cWW | ||
| IL_6VZ2_199 | No text annotation | ||
| IL_6VZ2_133 | Intercalated tWH | ||
| IL_6VZ2_134 | tSH-tSH-tHH-tHS | ||
| IL_6VZ2_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6VZ2_136 | Triple sheared | ||
| IL_6VZ2_137 | Single bulged C | ||
| IL_6VZ2_138 | Single bulged A | ||
| IL_6VZ2_139 | Kink-turn related | ||
| IL_6VZ2_140 | Minor groove platform, major groove intercalation | ||
| IL_6VZ2_141 | Major groove intercalation | ||
| IL_6VZ2_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6VZ2_200 | No text annotation | ||
| IL_6VZ2_143 | UAA/GAN related | ||
| IL_6VZ2_144 | Bulged stacked bases | ||
| IL_6VZ2_145 | No text annotation | ||
| IL_6VZ2_146 | Major groove platform | ||
| IL_6VZ2_147 | No text annotation | ||
| IL_6VZ2_148 | No text annotation | ||
| IL_6VZ2_149 | No text annotation | ||
| IL_6VZ2_150 | Minor groove platform | ||
| IL_6VZ2_151 | Isolated tHS basepair with bulges | ||
| IL_6VZ2_152 | Isolated non-canonical cWW pair | ||
| IL_6VZ2_153 | Isolated non-canonical cWW pair | ||
| IL_6VZ2_154 | Isolated non-canonical cWW pair | ||
| IL_6VZ2_155 | Isolated non-canonical cWW pair | ||
| IL_6VZ2_156 | No text annotation | ||
| IL_6VZ2_201 | No text annotation | ||
| IL_6VZ2_157 | Kink-turn | ||
| IL_6VZ2_158 | Single bulged U | ||
| IL_6VZ2_159 | Double sheared | ||
| IL_6VZ2_160 | No text annotation | ||
| IL_6VZ2_161 | No text annotation | ||
| IL_6VZ2_162 | No text annotation | ||
| IL_6VZ2_163 | Major groove minor groove platform with extra cWW | ||
| IL_6VZ2_164 | Double sheared with non-canonical cWW | ||
| IL_6VZ2_165 | No text annotation | ||
| IL_6VZ2_166 | Isolated non-canonical cWW with bulges | ||
| IL_6VZ2_167 | No text annotation | ||
| IL_6VZ2_168 | Major groove platform with intercalation | ||
| IL_6VZ2_169 | No text annotation | ||
| IL_6VZ2_170 | Single bulged A | ||
| IL_6VZ2_171 | tSH-tHS-tHW | ||
| IL_6VZ2_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6VZ2_173 | C-loop | ||
| IL_6VZ2_174 | UAA/GAN related, with intercalation | ||
| IL_6VZ2_175 | Multiple bulged bases | ||
| IL_6VZ2_176 | UAA/GAN with extra cWW | ||
| IL_6VZ2_177 | No text annotation | ||
| IL_6VZ2_178 | Major groove intercalation | ||
| IL_6VZ2_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_6VZ2_180 | tHS double platform | ||
| IL_6VZ2_181 | Major groove intercalation | ||
| IL_6VZ2_182 | No text annotation | ||
| IL_6VZ2_183 | Major groove minor groove platform; mini C-loop | ||
| IL_6VZ2_184 | Symmetric double minor groove platform | ||
| IL_6VZ2_185 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VZ2_001 | No text annotation | ||
| J3_6VZ2_027 | No text annotation | ||
| J3_6VZ2_002 | No text annotation | ||
| J3_6VZ2_028 | No text annotation | ||
| J3_6VZ2_003 | No text annotation | ||
| J3_6VZ2_004 | No text annotation | ||
| J3_6VZ2_005 | No text annotation | ||
| J3_6VZ2_006 | No text annotation | ||
| J3_6VZ2_029 | No text annotation | ||
| J3_6VZ2_007 | No text annotation | ||
| J3_6VZ2_008 | No text annotation | ||
| J3_6VZ2_030 | No text annotation | ||
| J3_6VZ2_009 | No text annotation | ||
| J3_6VZ2_010 | No text annotation | ||
| J3_6VZ2_011 | No text annotation | ||
| J3_6VZ2_031 | No text annotation | ||
| J3_6VZ2_012 | No text annotation | ||
| J3_6VZ2_013 | No text annotation | ||
| J3_6VZ2_032 | No text annotation | ||
| J3_6VZ2_033 | No text annotation | ||
| J3_6VZ2_014 | No text annotation | ||
| J3_6VZ2_034 | No text annotation | ||
| J3_6VZ2_015 | No text annotation | ||
| J3_6VZ2_016 | No text annotation | ||
| J3_6VZ2_017 | No text annotation | ||
| J3_6VZ2_018 | No text annotation | ||
| J3_6VZ2_019 | No text annotation | ||
| J3_6VZ2_020 | No text annotation | ||
| J3_6VZ2_035 | No text annotation | ||
| J3_6VZ2_021 | Kink-turn 3-way junction | ||
| J3_6VZ2_036 | No text annotation | ||
| J3_6VZ2_022 | No text annotation | ||
| J3_6VZ2_023 | No text annotation | ||
| J3_6VZ2_024 | No text annotation | ||
| J3_6VZ2_025 | No text annotation | ||
| J3_6VZ2_026 | No text annotation | ||
| J4_6VZ2_001 | tRNA junction | ||
| J4_6VZ2_002 | tRNA junction | ||
| J4_6VZ2_003 | No text annotation | ||
| J4_6VZ2_004 | No text annotation | ||
| J4_6VZ2_005 | No text annotation | ||
| J4_6VZ2_006 | No text annotation | ||
| J4_6VZ2_007 | No text annotation | ||
| J4_6VZ2_008 | No text annotation | ||
| J4_6VZ2_009 | No text annotation | ||
| J4_6VZ2_010 | No text annotation | ||
| J4_6VZ2_011 | No text annotation | ||
| J4_6VZ2_012 | No text annotation | ||
| J4_6VZ2_013 | No text annotation | ||
| J4_6VZ2_014 | No text annotation | ||
| J4_6VZ2_015 | No text annotation | ||
| J5_6VZ2_001 | No text annotation | ||
| J5_6VZ2_002 | No text annotation | ||
| J5_6VZ2_003 | No text annotation | ||
| J5_6VZ2_004 | No text annotation | ||
| J5_6VZ2_005 | No text annotation | ||
| J5_6VZ2_006 | No text annotation | ||
| J5_6VZ2_007 | No text annotation | ||
| J6_6VZ2_001 | No text annotation | ||
| J7_6VZ2_001 | No text annotation | ||
| J7_6VZ2_002 | No text annotation |
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