7OHS Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OHS_005 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_7OHS_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_7OHS_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.9 | |
| HL_7OHS_014 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.2 | |
| HL_7OHS_034 | 1/1/3194:3199 | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_09829.1 | |
| HL_7OHS_042 | 1/6/12:16 | No text annotation Not in a motif group | ||
| HL_7OHS_043 | 1/6/37:42 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OHS_001 | No text annotation | ||
| HL_7OHS_002 | No text annotation | ||
| HL_7OHS_003 | No text annotation | ||
| HL_7OHS_004 | No text annotation | ||
| HL_7OHS_008 | No text annotation | ||
| HL_7OHS_009 | No text annotation | ||
| HL_7OHS_010 | No text annotation | ||
| HL_7OHS_011 | GNRA | ||
| HL_7OHS_012 | No text annotation | ||
| HL_7OHS_013 | No text annotation | ||
| HL_7OHS_015 | No text annotation | ||
| HL_7OHS_016 | No text annotation | ||
| HL_7OHS_017 | GNRA | ||
| HL_7OHS_018 | No text annotation | ||
| HL_7OHS_019 | No text annotation | ||
| HL_7OHS_020 | No text annotation | ||
| HL_7OHS_021 | No text annotation | ||
| HL_7OHS_022 | No text annotation | ||
| HL_7OHS_023 | No text annotation | ||
| HL_7OHS_024 | No text annotation | ||
| HL_7OHS_025 | No text annotation | ||
| HL_7OHS_026 | No text annotation | ||
| HL_7OHS_027 | No text annotation | ||
| HL_7OHS_028 | No text annotation | ||
| HL_7OHS_029 | No text annotation | ||
| HL_7OHS_030 | No text annotation | ||
| HL_7OHS_031 | No text annotation | ||
| HL_7OHS_032 | No text annotation | ||
| HL_7OHS_033 | No text annotation | ||
| HL_7OHS_035 | No text annotation | ||
| HL_7OHS_036 | No text annotation | ||
| HL_7OHS_037 | No text annotation | ||
| HL_7OHS_038 | No text annotation | ||
| HL_7OHS_039 | No text annotation | ||
| HL_7OHS_040 | No text annotation | ||
| HL_7OHS_041 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OHS_012 | 1/1/337:339, 1/2/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.3 | |
| IL_7OHS_013 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_8C3A_015 IL_60992.6 | |
| IL_7OHS_014 | 1/1/404:412, 1/2/11:19 | No text annotation Not in a motif group | ||
| IL_7OHS_019 | 1/1/512:513, 1/1/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.3 | |
| IL_7OHS_020 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_7OHS_021 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_7OHS_023 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_7OHS_028 | 1/1/969:970, 1/1/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_7OHS_030 | 1/1/983:985, 1/1/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.3 | |
| IL_7OHS_031 | 1/1/986:987, 1/1/1062:1098 | No text annotation Not in a motif group | ||
| IL_7OHS_032 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_7OHS_033 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_7OHS_034 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5TBW_049 IL_15861.7 | |
| IL_7OHS_035 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | homologous IL_5TBW_050 IL_83039.14 | |
| IL_7OHS_042 | 1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_7OHS_043 | 1/1/1385:1387, 1/1/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.3 | |
| IL_7OHS_056 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.3 | |
| IL_7OHS_057 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_7OHS_058 | 1/1/3192:3194, 1/1/3199:3200 | Single stack bend Not in a motif group | geometric IL_4V9F_081 IL_76488.2 | |
| IL_7OHS_069 | 1/6/26:27, 1/6/51:54 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_7OHS_070 | 1/6/30:35, 1/6/44:48 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OHS_001 | No text annotation | ||
| IL_7OHS_002 | No text annotation | ||
| IL_7OHS_003 | No text annotation | ||
| IL_7OHS_004 | No text annotation | ||
| IL_7OHS_005 | No text annotation | ||
| IL_7OHS_006 | No text annotation | ||
| IL_7OHS_007 | No text annotation | ||
| IL_7OHS_008 | Single bulged A | ||
| IL_7OHS_009 | No text annotation | ||
| IL_7OHS_010 | No text annotation | ||
| IL_7OHS_011 | No text annotation | ||
| IL_7OHS_015 | No text annotation | ||
| IL_7OHS_016 | No text annotation | ||
| IL_7OHS_017 | No text annotation | ||
| IL_7OHS_018 | No text annotation | ||
| IL_7OHS_022 | Tandem non-canonical cWW pairs | ||
| IL_7OHS_024 | No text annotation | ||
| IL_7OHS_025 | No text annotation | ||
| IL_7OHS_026 | No text annotation | ||
| IL_7OHS_027 | No text annotation | ||
| IL_7OHS_029 | No text annotation | ||
| IL_7OHS_036 | No text annotation | ||
| IL_7OHS_037 | No text annotation | ||
| IL_7OHS_038 | Single bulged U | ||
| IL_7OHS_039 | Kink-turn | ||
| IL_7OHS_040 | No text annotation | ||
| IL_7OHS_041 | No text annotation | ||
| IL_7OHS_044 | Kink-turn | ||
| IL_7OHS_045 | Single bulged A | ||
| IL_7OHS_046 | No text annotation | ||
| IL_7OHS_047 | No text annotation | ||
| IL_7OHS_048 | No text annotation | ||
| IL_7OHS_049 | No text annotation | ||
| IL_7OHS_050 | No text annotation | ||
| IL_7OHS_051 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7OHS_052 | No text annotation | ||
| IL_7OHS_053 | No text annotation | ||
| IL_7OHS_054 | Multiple bulged bases | ||
| IL_7OHS_055 | No text annotation | ||
| IL_7OHS_059 | No text annotation | ||
| IL_7OHS_060 | No text annotation | ||
| IL_7OHS_061 | Tandem non-canonical cWW pairs | ||
| IL_7OHS_062 | Tandem non-canonical cWW pairs | ||
| IL_7OHS_063 | No text annotation | ||
| IL_7OHS_064 | No text annotation | ||
| IL_7OHS_065 | No text annotation | ||
| IL_7OHS_066 | No text annotation | ||
| IL_7OHS_067 | Isolated non-canonical cWW with bulges | ||
| IL_7OHS_068 | Single bulged U |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OHS_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7OHS_001 | No text annotation | ||
| J3_7OHS_002 | No text annotation | ||
| J3_7OHS_004 | No text annotation | ||
| J3_7OHS_005 | No text annotation | ||
| J3_7OHS_006 | No text annotation |
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