RNA 3D Hub //

7OHS Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OHS_0051/1/194:201T-loop with 1 bulged base
Not in a motif group		homologous
HL_5TBW_005
HL_68493.6
HL_7OHS_0061/1/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98557.5
HL_7OHS_0071/1/216:224No text annotation
Not in a motif group		homologous
HL_5TBW_007
HL_08002.6
HL_7OHS_0141/1/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_43074.18
HL_7OHS_0341/1/3194:3199No text annotation
Not in a motif group		geometric
HL_5TBW_044
HL_05667.1
HL_7OHS_0421/6/12:16No text annotation
Not in a motif group
HL_7OHS_0431/6/37:42No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_7OHS_001No text annotation
HL_7OHS_002No text annotation
HL_7OHS_003No text annotation
HL_7OHS_004No text annotation
HL_7OHS_008No text annotation
HL_7OHS_009No text annotation
HL_7OHS_010Other HL
HL_7OHS_011GNRA
HL_7OHS_012No text annotation
HL_7OHS_013No text annotation
HL_7OHS_015No text annotation
HL_7OHS_016No text annotation
HL_7OHS_017GNRA
HL_7OHS_018No text annotation
HL_7OHS_019No text annotation
HL_7OHS_020No text annotation
HL_7OHS_021No text annotation
HL_7OHS_022No text annotation
HL_7OHS_023No text annotation
HL_7OHS_024No text annotation
HL_7OHS_025No text annotation
HL_7OHS_026GNRA
HL_7OHS_027No text annotation
HL_7OHS_028No text annotation
HL_7OHS_029No text annotation
HL_7OHS_030No text annotation
HL_7OHS_031GNRA
HL_7OHS_032No text annotation
HL_7OHS_033No text annotation
HL_7OHS_035No text annotation
HL_7OHS_036No text annotation
HL_7OHS_037No text annotation
HL_7OHS_038No text annotation
HL_7OHS_039No text annotation
HL_7OHS_040No text annotation
HL_7OHS_041No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OHS_0121/1/337:339,
1/2/25:26		Single bulged A
Not in a motif group		homologous
IL_5TBW_013
IL_80007.16
IL_7OHS_0131/1/376:379,
1/1/390:403		No text annotation
Not in a motif group		geometric
IL_5TBW_014
IL_60992.5
IL_7OHS_0141/1/404:412,
1/2/11:19		No text annotation
Not in a motif group
IL_7OHS_0191/1/512:513,
1/1/577:579		Single bulged A
Not in a motif group		homologous
IL_5TBW_018
IL_40508.4
IL_7OHS_0201/1/517:525,
1/1/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_41593.1
IL_7OHS_0211/1/531:538,
1/1/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_94501.1
IL_7OHS_0231/1/680:684,
1/1/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_92343.1
IL_7OHS_0281/1/969:970,
1/1/1111:1113		Single stack bend
Not in a motif group		homologous
IL_5TBW_035
IL_04038.4
IL_7OHS_0301/1/983:985,
1/1/1099:1100		Single bulged G
Not in a motif group		homologous
IL_5TBW_037
IL_59137.10
IL_7OHS_0311/1/986:987,
1/1/1062:1098		No text annotation
Not in a motif group
IL_7OHS_0321/1/1120:1122,
1/1/1136:1138		No text annotation
Not in a motif group		homologous
IL_5TBW_046
IL_01312.13
IL_7OHS_0331/1/1167:1171,
1/1/1328:1332		UAA/GAN
Not in a motif group		homologous
IL_5TBW_048
IL_53523.5
IL_7OHS_0341/1/1173:1180,
1/1/1325:1326		SSU/LSU pseudoknot
Not in a motif group		geometric
IL_5TBW_049
IL_15861.6
IL_7OHS_0351/1/1180:1182,
1/1/1324:1325		Single bulged U
Not in a motif group		homologous
IL_5TBW_050
IL_83039.11
IL_7OHS_0421/1/1376:1378,
1/1/1428:1431		Isolated cWS basepair
Not in a motif group		homologous
IL_5TBW_057
IL_01312.13
IL_7OHS_0431/1/1385:1387,
1/1/1420:1421		Single bulged A
Not in a motif group		homologous
IL_5TBW_058
IL_80007.16
IL_7OHS_0561/1/3177:3179,
1/1/3210:3211		Single bulged A
Not in a motif group		geometric
IL_5TBW_123
IL_80007.16
IL_7OHS_0571/1/3179:3188,
1/1/3204:3210		No text annotation
Not in a motif group		homologous
IL_5TBW_124
IL_56867.1
IL_7OHS_0581/1/3192:3194,
1/1/3199:3200		Single stack bend
Not in a motif group		geometric
IL_4V9F_081
IL_04038.4
IL_7OHS_0691/6/26:27,
1/6/51:54		Multiple bulged bases
Not in a motif group		geometric
IL_4V88_392
IL_13730.12
IL_7OHS_0701/6/30:35,
1/6/44:48		No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_7OHS_001Single bulged C
IL_7OHS_002Single bulged U
IL_7OHS_003Single stack bend
IL_7OHS_004tSH-tHW-tHH-tHS
IL_7OHS_005No text annotation
IL_7OHS_006No text annotation
IL_7OHS_007No text annotation
IL_7OHS_008Single bulged A
IL_7OHS_009No text annotation
IL_7OHS_010No text annotation
IL_7OHS_011Single bulged U
IL_7OHS_015No text annotation
IL_7OHS_016No text annotation
IL_7OHS_017No text annotation
IL_7OHS_018No text annotation
IL_7OHS_022Tandem non-canonical cWW pairs
IL_7OHS_024UAA/GAN
IL_7OHS_025No text annotation
IL_7OHS_026No text annotation
IL_7OHS_027No text annotation
IL_7OHS_029No text annotation
IL_7OHS_036No text annotation
IL_7OHS_037No text annotation
IL_7OHS_038Single bulged U
IL_7OHS_039Kink-turn
IL_7OHS_040No text annotation
IL_7OHS_041Major groove platform with extra cWW
IL_7OHS_044Kink-turn
IL_7OHS_045Single bulged A
IL_7OHS_0467x6 Sarcin-Ricin; G-bulge
IL_7OHS_047No text annotation
IL_7OHS_048No text annotation
IL_7OHS_049Double sheared
IL_7OHS_050No text annotation
IL_7OHS_0518x7 Sarcin-Ricin; G-bulge
IL_7OHS_052No text annotation
IL_7OHS_053No text annotation
IL_7OHS_054Multiple bulged bases
IL_7OHS_055UAA/GAN
IL_7OHS_059No text annotation
IL_7OHS_060No text annotation
IL_7OHS_061Tandem non-canonical cWW pairs
IL_7OHS_062Tandem non-canonical cWW pairs
IL_7OHS_063No text annotation
IL_7OHS_064No text annotation
IL_7OHS_065No text annotation
IL_7OHS_066No text annotation
IL_7OHS_067Isolated non-canonical cWW with bulges
IL_7OHS_068Single bulged U

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OHS_0031/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
Not in a motif group		homologous
J3_5TBW_003
NA

Problematic loops

#loop idProblemSequence
J3_7OHS_001No text annotation
J3_7OHS_002No text annotation
J3_7OHS_004No text annotation
J3_7OHS_005No text annotation
J3_7OHS_006No text annotation

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