Motif HL_85603.2 Version HL_85603.2 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_5VSU_001 | 5VSU | 0.3947 | 0 | GNRA variation | I | U6 snRNA | U | 70 | G | 71 | C | 72 | A | 73 | U | 74 | A | 75 | cWW | |
2 | HL_4V88_217 | 4V88 | 0.5476 | 1 | GNRA | A6 | SSU rRNA | U | 1396 | U | 1397 | U | 1398 | A | 1400 | A | 1401 | G | 1402 | cWW | ntSH |
3 | HL_1G1X_004 | 1G1X | 0.3656 | 0 | GNRA | I | 16S RIBOSOMAL RNA | C | 590 | G | 591 | A | 592 | A | 593 | A | 594 | G | 649 | cWW | |
4 | HL_4KQY_002 | 4KQY | 0.3487 | 0 | GNRA | A | SAM-I riboswitch | C | 60 | G | 61 | A | 62 | A | 63 | A | 64 | G | 65 | ncWW | ntSH |
5 | HL_6CZR_098 | 6CZR | 0.2972 | 0 | GNRA | 1a | SSU rRNA | C | 1148 | G | 1149 | A | 1150 | A | 1151 | A | 1152 | G | 1153 | cWW | ntSH |
6 | HL_5TBW_023 | 5TBW | 0.2894 | 1 | GNRA | 1 | LSU rRNA | C | 1023 | G | 1024 | A | 1025 | A | 1026 | A | 1027 | G | 1029 | cWW | |
7 | HL_6JDV_001 | 6JDV | 0.3009 | 0 | GNRA | B | sgRNA | G | 48 | G | 49 | A | 50 | A | 51 | A | 52 | C | 53 | cWW | |
8 | HL_4LFB_022 | 4LFB | 0.3046 | 0 | GNRA | A | SSU rRNA | U | 1012 | G | 1013 | A | 1014 | A | 1015 | A | 1016 | G | 1017 | cWW | ntSH |
9 | HL_5TBW_047 | 5TBW | 0.2870 | 1 | GNRA | 1 | LSU rRNA | A | 2164 | G | 2165 | A | 2166 | A | 2167 | A | 2168 | U | 2170 | cWW | ntSH |
10 | HL_8C3A_047 | 8C3A | 0.2550 | 1 | GNRA | 1 | LSU rRNA | A | 2142 | G | 2143 | A | 2144 | A | 2145 | A | 2146 | U | 2148 | cWW | ntSH |
11 | HL_4LFB_007 | 4LFB | 0.2371 | 0 | GNRA | A | SSU rRNA | U | 296 | G | 297 | A | 298 | G | 299 | A | 300 | G | 301 | cWW | ntSH |
12 | HL_5J7L_007 | 5J7L | 0.2092 | 0 | GNRA | AA | SSU rRNA | U | 296 | G | 297 | A | 298 | G | 299 | A | 300 | G | 301 | cWW | ntSH |
13 | HL_3RG5_007 | 3RG5 | 0.1821 | 0 | GNRA | B | Selenocysteine transfer RNA | U | 47|||C | U | 47|||D | A | 47|||E | G | 47|||F | C | 47|||G | G | 47|||H | cWW | ntSHa |
14 | HL_6CZR_078 | 6CZR | 0.2360 | 0 | GNRA | 1a | SSU rRNA | U | 292 | G | 293 | A | 294 | G | 295 | A | 296 | G | 297 | cWW | ntSH |
15 | HL_4V9F_028 | 4V9F | 0.2046 | 1 | GNRA | 0 | LSU rRNA | G | 1054 | G | 1055 | U | 1056 | A | 1057 | A | 1058 | C | 1060 | cWW | ntSH |
16 | HL_5TBW_025 | 5TBW | 0.2377 | 1 | GNRA | 1 | LSU rRNA | G | 1126 | G | 1127 | U | 1128 | A | 1129 | A | 1130 | C | 1132 | cWW | ntSH |
17 | HL_8C3A_025 | 8C3A | 0.2400 | 1 | GNRA | 1 | LSU rRNA | G | 1122 | G | 1123 | U | 1124 | A | 1125 | A | 1126 | C | 1128 | cWW | ntSH |
18 | HL_7KKV_003 | 7KKV | 0.2907 | 1 | GNRA | B | OLE* RNA | G | 528 | G | 529 | A | 530 | A | 531 | A | 532 | C | 534 | cWW | |
19 | HL_4V9F_045 | 4V9F | 0.2506 | 1 | GNRA | 0 | LSU rRNA | C | 1793 | G | 1794 | G | 1795 | A | 1796 | A | 1797 | G | 1799 | cWW | |
20 | HL_6AEG_001 | 6AEG | 0.2163 | 0 | GNRA | A | RNA (95-MER) | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | ncWW | ntSH |
21 | HL_7A0S_026 | 7A0S | 0.2141 | 2 | GNRA | X | LSU rRNA | A | 966 | G | 967 | C | 968 | A | 970 | A | 971 | U | 973 | cWW | ntSH |
22 | HL_4WF9_027 | 4WF9 | 0.2634 | 2 | GNRA | X | LSU rRNA | U | 999 | G | 1000 | A | 1001 | A | 1003 | A | 1004 | G | 1006 | cWW | ntSH |
23 | HL_8VTW_026 | 8VTW | 0.2086 | 2 | GNRA | 1A | LSU rRNA | C | 955 | G | 956 | A | 957 | A | 959 | A | 960 | G | 962 | cWW | ntSH |
24 | HL_5FQ5_001 | 5FQ5 | 0.1848 | 0 | GNRA | A | SGRNA | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | cWW | |
25 | HL_7UQ6_002 | 7UQ6 | 0.1568 | 0 | GNRA | B | tRNA | G | 41 | G | 42 | A | 43 | A | 44 | A | 45 | C | 46 | cWW | ntSH |
26 | HL_1U9S_002 | 1U9S | 0.1552 | 0 | GNRA | A | RIBONUCLEASE P | G | 99 | G | 100 | U | 101 | A | 102 | A | 103 | C | 104 | cWW | ntSH |
27 | HL_3D0U_004 | 3D0U | 0.1822 | 0 | GNRA | A | Lysine Riboswitch RNA | C | 142 | G | 143 | A | 144 | A | 145 | A | 146 | G | 147 | cWW | ntSH |
28 | HL_7K16_001 | 7K16 | 0.1019 | 0 | GNRA | P | RNA (51-MER) | C | 13 | G | 14 | A | 15 | A | 16 | A | 17 | G | 18 | cWW | ntSH |
29 | HL_4ENC_002 | 4ENC | 0.1171 | 0 | GNRA | A | Fluoride riboswitch | U | 28 | G | 29 | A | 30 | A | 31 | A | 32 | A | 33 | cWW | ntSH |
30 | HL_5VW1_001 | 5VW1 | 0.1002 | 0 | GNRA | C | sgRNA | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | cWW | |
31 | HL_8C3A_011 | 8C3A | 0.1057 | 0 | GNRA | 1 | LSU rRNA | U | 382 | G | 383 | A | 384 | A | 385 | A | 386 | A | 387 | cWW | ntSH |
32 | HL_6JOO_001 | 6JOO | 0.1147 | 0 | GNRA | B | Guide RNA | G | 32 | G | 33 | A | 34 | A | 35 | A | 36 | C | 37 | cWW | ntSH |
33 | HL_6UFH_002 | 6UFH | 0.1278 | 0 | GNRA | A | RNA (167-MER) | G | 45 | G | 46 | A | 47 | A | 48 | A | 49 | C | 50 | cWW | ntSH |
34 | HL_5F9F_003 | 5F9F | 0.1357 | 0 | GNRA | F | RNA (24-mer) | A | 10 | G | 11 | U | 12 | G | 13 | A | 14 | U | 15 | cWW | |
35 | HL_5B2T_001 | 5B2T | 0.1063 | 0 | GNRA | A | Guide RNA | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | cWW | |
36 | HL_2ZZM_003 | 2ZZM | 0.1438 | 0 | GNRA | B | RNA (84-MER) | C | 47 | G | 47|||A | U | 47|||B | A | 47|||C | G | 47|||D | G | 47|||E | cWW | |
37 | HL_5J7L_152 | 5J7L | 0.1391 | 0 | GNRA | DA | LSU rRNA | G | 629 | G | 630 | A | 631 | A | 632 | A | 633 | C | 634 | cWW | |
38 | HL_6N2V_001 | 6N2V | 0.1263 | 0 | GNRA | A | X. oryzae Mn riboswitch optimized construct | G | 24 | G | 25 | A | 26 | A | 27 | A | 28 | C | 29 | cWW | |
39 | HL_4V9F_060 | 4V9F | 0.1527 | 0 | GNRA | 0 | LSU rRNA | C | 2411 | G | 2412 | A | 2413 | A | 2414 | A | 2415 | G | 2416 | cWW | |
40 | HL_7A0S_020 | 7A0S | 0.1887 | 0 | GNRA | X | LSU rRNA | C | 640 | G | 641 | A | 642 | A | 643 | A | 644 | G | 645 | cWW | |
41 | HL_7A0S_057 | 7A0S | 0.1486 | 0 | GNRA | X | LSU rRNA | G | 2353 | G | 2354 | A | 2355 | A | 2356 | A | 2357 | C | 2358 | cWW | |
42 | HL_4WF9_054 | 4WF9 | 0.1727 | 0 | GNRA | X | LSU rRNA | C | 2401 | G | 2402 | A | 2403 | A | 2404 | A | 2405 | G | 2406 | cWW | |
43 | HL_4OQU_001 | 4OQU | 0.1784 | 0 | GNRA | A | SAM-I/IV riboswitch | G | 13 | G | 14 | A | 15 | G | 16 | A | 17 | C | 18 | ncWW | |
44 | HL_1UN6_004 | 1UN6 | 0.1438 | 0 | GNRA | F | 5S RIBOSOMAL RNA | G | 82 | G | 83 | A | 84 | A | 85 | A | 86 | C | 94 | cWW | ntSH |
45 | HL_3NMU_002 | 3NMU | 0.1262 | 0 | GNRA | E | RNA (34-MER) | C | 18 | G | 19 | A | 20 | A | 21 | A | 22 | G | 23 | cWW | ntSH |
46 | HL_6CZR_091 | 6CZR | 0.1452 | 0 | GNRA | 1a | SSU rRNA | C | 875 | G | 876 | C | 877 | A | 878 | A | 879 | G | 880 | cWW | |
47 | HL_4Y1M_004 | 4Y1M | 0.1738 | 0 | GNRA | B | E. coli yybP-ykoY riboswitch | A | 81 | G | 82 | A | 83 | A | 84 | A | 85 | U | 86 | cWW | ntSH |
48 | HL_5TBW_048 | 5TBW | 0.2073 | 0 | GNRA | 1 | LSU rRNA | A | 2220 | G | 2221 | A | 2222 | A | 2223 | A | 2224 | U | 2225 | cWW | |
49 | HL_3SUX_002 | 3SUX | 0.1682 | 0 | GNRA | X | THF riboswitch | C | 65 | G | 66 | A | 67 | A | 68 | A | 69 | G | 70 | cWW | |
50 | HL_8C3A_048 | 8C3A | 0.1859 | 0 | GNRA | 1 | LSU rRNA | A | 2198 | G | 2199 | A | 2200 | A | 2201 | A | 2202 | U | 2203 | cWW | |
51 | HL_8C3A_215 | 8C3A | 0.1702 | 0 | GNRA | CM | SSU rRNA | A | 1069 | G | 1070 | A | 1071 | A | 1072 | A | 1073 | U | 1074 | cWW | |
52 | HL_4V88_210 | 4V88 | 0.1833 | 0 | GNRA | A6 | SSU rRNA | A | 1084 | G | 1085 | A | 1086 | A | 1087 | A | 1088 | U | 1089 | cWW | |
53 | HL_5J7L_019 | 5J7L | 0.1888 | 0 | GNRA | AA | SSU rRNA | C | 862 | U | 863 | A | 864 | A | 865 | C | 866 | G | 867 | cWW | ntSH |
54 | HL_4LFB_019 | 4LFB | 0.1722 | 0 | GNRA | A | SSU rRNA | C | 862 | U | 863 | A | 864 | A | 865 | C | 866 | G | 867 | cWW | ntSH |
55 | HL_7MDL_003 | 7MDL | 0.1438 | 0 | GNRA | E | RNA (90-MER) | C | 47||A|C | U | 47||A|D | A | 47||A|E | G | 47||A|F | C | 47||A|G | G | 47||A|H | cWW | ntSHa |
56 | HL_4ZT0_004 | 4ZT0 | 0.1735 | 0 | GNRA | D | single-guide RNA | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | cWW | ntSH |
57 | HL_8KAH_002 | 8KAH | 0.1544 | 0 | GNRA | I | RNA (65-MER) | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | cWW | |
58 | HL_4LCK_004 | 4LCK | 0.1413 | 0 | GNRA | B | tRNA | C | 71 | G | 72 | A | 73 | A | 74 | A | 75 | G | 76 | cWW | ntSH |
59 | HL_2OIU_001 | 2OIU | 0.1240 | 0 | GNRA | P | L1 Ribozyme RNA Ligase | C | 10 | G | 11 | A | 12 | A | 13 | A | 14 | G | 15 | cWW | ntSH |
60 | HL_4LFB_027 | 4LFB | 0.1458 | 0 | GNRA | A | SSU rRNA | C | 1165 | G | 1166 | A | 1167 | A | 1168 | A | 1169 | G | 1171 | cWW | ntSH |
61 | HL_1KH6_002 | 1KH6 | 0.1468 | 0 | GNRA | A | JIIIabc | C | 28 | G | 29 | A | 30 | A | 31 | A | 32 | G | 33 | cWW | ntSH |
62 | HL_1U6B_001 | 1U6B | 0.1553 | 0 | GNRA | B | 197-MER | G | 23 | G | 24 | A | 25 | A | 26 | A | 27 | C | 28 | cWW | ntSH |
63 | HL_4PLX_001 | 4PLX | 0.1359 | 0 | GNRA | A | Core ENE hairpin and A-rich tract from MALAT1 | C | 24 | G | 25 | A | 26 | A | 27 | A | 28 | G | 29 | cWW | ntSH |
64 | HL_7WIE_001 | 7WIE | 0.1498 | 0 | GNRA | V | RNA (50-MER) | C | 31 | G | 32 | A | 33 | A | 34 | A | 35 | G | 37 | cWW | ntSH |
65 | HL_5VCI_001 | 5VCI | 0.1371 | 0 | GNRA | A | RNA (22-mer) | C | 16 | G | 17 | A | 18 | A | 19 | A | 20 | G | 21 | cWW | ntSH |
66 | HL_4JF2_001 | 4JF2 | 0.1420 | 0 | GNRA | A | PreQ1-II Riboswitch | C | 8 | G | 9 | A | 10 | A | 11 | A | 12 | G | 13 | cWW | ntSH |
67 | HL_8HZE_002 | 8HZE | 0.1165 | 0 | GNRA | B | RNA (36-MER) | C | 19 | G | 20 | A | 21 | A | 22 | A | 23 | G | 24 | cWW | ntSH |
68 | HL_5UZ6_001 | 5UZ6 | 0.0900 | 0 | GNRA | A | RNA (25-MER) | C | 15 | G | 16 | A | 17 | A | 18 | A | 19 | G | 20 | cWW | ntSH |
69 | HL_5D5L_001 | 5D5L | 0.1318 | 0 | GNRA | A | PreQ1-II riboswitch | C | 8 | G | 9 | A | 10 | A | 11 | A | 12 | G | 13 | cWW | ntSH |
70 | HL_2R8S_001 | 2R8S | 0.1302 | 0 | GNRA | R | P4-P6 RNA RIBOZYME DOMAIN | G | 149 | G | 150 | A | 151 | A | 152 | A | 153 | C | 154 | cWW | ntSH |
71 | HL_1HMH_001 | 1HMH | 0.1238 | 0 | GNRA | A | HAMMERHEAD RIBOZYME-RNA STRAND | C | 104 | G | 21|||L | A | 22|||L | A | 23|||L | A | 24|||L | G | 114 | cWW | ntSH |
72 | HL_5J7L_179 | 5J7L | 0.1814 | 0 | GNRA related | DA | LSU rRNA | C | 1806 | G | 1807 | A | 1808 | A | 1809 | A | 1810 | G | 1811 | cWW | ntSH |
73 | HL_4BW0_001 | 4BW0 | 0.1922 | 0 | GNRA | A | HMKT-7 | C | 9 | G | 10 | A | 11 | A | 12 | A | 13 | G | 14 | cWW | ntSH |
74 | HL_4FRG_002 | 4FRG | 0.1618 | 0 | GNRA | B | cobalamin riboswitch aptamer domain | C | 46 | G | 47 | A | 48 | A | 49 | A | 50 | G | 51 | cWW | ntSH |
75 | HL_6JQ5_004 | 6JQ5 | 0.1675 | 0 | GNRA | B | RNA (82-MER) | C | 45 | G | 46 | A | 47 | A | 48 | A | 49 | G | 50 | cWW | ntSH |
76 | HL_7QQP_003 | 7QQP | 0.1747 | 0 | GNRA | A | AAVS1 sgRNA | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | cWW | ntSH |
77 | HL_1NBS_007 | 1NBS | 0.1967 | 0 | GNRA | B | RNase P class B | A | 204 | G | 205 | A | 206 | A | 207 | A | 208 | U | 209 | cWW | ntSH |
78 | HL_3CUL_001 | 3CUL | 0.1735 | 0 | GNRA | C | RNA (92-MER) | C | 7 | G | 8 | A | 9 | A | 10 | A | 11 | G | 12 | cWW | ntSH |
79 | HL_5DCV_002 | 5DCV | 0.1518 | 0 | GNRA | D | RNA (47-MER) | G | 26 | G | 27 | A | 28 | A | 29 | A | 30 | C | 31 | cWW | ntSH |
80 | HL_5XTM_002 | 5XTM | 0.1601 | 0 | GNRA | D | RNA (47-MER) | G | 24 | G | 25 | A | 26 | A | 27 | A | 28 | C | 29 | cWW | ntSH |
81 | HL_5XTM_001 | 5XTM | 0.1552 | 0 | GNRA | B | RNA (47-MER) | G | 24 | G | 25 | A | 26 | A | 27 | A | 28 | C | 29 | cWW | ntSH |
82 | HL_7UZ0_002 | 7UZ0 | 0.1463 | 0 | GNRA | A | tRNA | C | 36 | G | 37 | A | 38 | A | 39 | A | 40 | G | 41 | cWW | ntSH |
83 | HL_5Y7M_002 | 5Y7M | 0.1393 | 0 | GNRA | D | RNA (52-MER) | C | 24 | G | 25 | A | 26 | A | 27 | A | 28 | G | 29 | cWW | ntSH |
84 | HL_4K50_001 | 4K50 | 0.1032 | 0 | GNRA | B | RNA (33-MER) | U | 587 | G | 588 | A | 589 | A | 590 | A | 591 | G | 592 | cWW | ntSH |
85 | HL_1KXK_001 | 1KXK | 0.1390 | 0 | GNRA | A | ai5g group II Self-splicing intron | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | G | 38 | cWW | ntSH |
86 | HL_4K27_001 | 4K27 | 0.1547 | 0 | GNRA | U | Myotonic Dystrophy Type 2 RNA | U | 26 | G | 27 | A | 28 | A | 29 | A | 30 | G | 31 | cWW | ntSH |
87 | HL_5BTM_001 | 5BTM | 0.1772 | 0 | GNRA | A | RNA (55-mer) | U | 26 | G | 27 | A | 28 | A | 29 | A | 30 | G | 31 | cWW | ntSH |
88 | HL_4PCJ_001 | 4PCJ | 0.1744 | 0 | GNRA | A | trCUG-3('5) | U | 16 | G | 17 | A | 18 | A | 19 | A | 20 | G | 21 | cWW | ntSH |
89 | HL_6WPI_001 | 6WPI | 0.1872 | 0 | GNRA | B | RNA (47-MER) | U | 25 | G | 26 | A | 27 | A | 28 | A | 29 | G | 30 | cWW | ntSH |
90 | HL_5M0H_001 | 5M0H | 0.1834 | 0 | GNRA | A | ASH1 E3 (42 nt-TL/TLR) | U | 21 | G | 22 | A | 23 | A | 24 | A | 25 | G | 26 | cWW | ntSH |
91 | HL_3V7E_003 | 3V7E | 0.1869 | 0 | GNRA | C | SAM-I riboswitch | G | 105 | G | 106 | A | 107 | A | 108 | A | 109 | C | 110 | cWW | ntSH |
92 | HL_3IGI_006 | 3IGI | 0.1220 | 0 | GNRA | A | Group IIC intron | G | 274 | G | 275 | A | 276 | A | 277 | A | 278 | C | 279 | cWW | ntSH |
93 | HL_5FJC_003 | 5FJC | 0.0987 | 0 | GNRA | A | SAM-I riboswitch | G | 73 | G | 74 | A | 75 | A | 76 | A | 77 | C | 78 | cWW | ntSH |
94 | HL_5TPY_006 | 5TPY | 0.0827 | 0 | GNRA | A | RNA (71-MER) | C | 62 | G | 63 | A | 64 | A | 65 | A | 66 | G | 67 | cWW | ntSH |
95 | HL_4AOB_003 | 4AOB | 0.0958 | 0 | GNRA | A | SAM-I riboswitch | G | 73 | G | 74 | A | 75 | A | 76 | A | 77 | C | 78 | cWW | ntSH |
96 | HL_3MXH_001 | 3MXH | 0.0883 | 0 | GNRA | R | c-di-GMP riboswitch | C | 31 | G | 32 | A | 33 | A | 34 | A | 35 | G | 36 | cWW | ntSH |
97 | HL_6DVK_001 | 6DVK | 0.1137 | 0 | GNRA | H | RNA (95-MER) | G | 45 | G | 46 | A | 47 | A | 48 | A | 49 | C | 50 | cWW | ntSH |
98 | HL_1GID_004 | 1GID | 0.1101 | 0 | GNRA | B | P4-P6 RNA RIBOZYME DOMAIN | G | 149 | G | 150 | A | 151 | A | 152 | A | 153 | C | 154 | cWW | ntSH |
99 | HL_1G1X_001 | 1G1X | 0.0976 | 0 | GNRA | D | 16S RIBOSOMAL RNA | C | 590 | G | 591 | A | 592 | A | 593 | A | 594 | G | 649 | cWW | ntSH |
100 | HL_4R4V_004 | 4R4V | 0.1041 | 0 | GNRA | A | VS ribozyme RNA | C | 735 | G | 736 | U | 737 | A | 738 | A | 739 | G | 740 | cWW | ntSH |
101 | HL_5TBW_013 | 5TBW | 0.0903 | 0 | GNRA | 1 | LSU rRNA | C | 599 | G | 600 | U | 601 | A | 602 | A | 603 | G | 604 | cWW | ntSH |
102 | HL_6N2V_002 | 6N2V | 0.0838 | 0 | GNRA | A | X. oryzae Mn riboswitch optimized construct | C | 56 | G | 57 | A | 58 | A | 59 | A | 60 | G | 61 | cWW | ntSH |
103 | HL_1RLG_002 | 1RLG | 0.1065 | 0 | GNRA | D | 25-MER | C | 9 | G | 10 | A | 11 | A | 12 | A | 13 | G | 14 | cWW | ntSH |
104 | HL_4V9F_054 | 4V9F | 0.0999 | 0 | GNRA | 0 | LSU rRNA | C | 2248 | G | 2249 | G | 2250 | G | 2251 | A | 2252 | G | 2253 | cWW | ntSH |
105 | HL_7D7W_001 | 7D7W | 0.0000 | 0 | GNRA | A | 18GAAA (52-MER) | C | 27 | G | 28 | A | 29 | A | 30 | A | 31 | G | 32 | cWW | ntSH |
106 | HL_7OZQ_004 | 7OZQ | 0.0658 | 0 | GNRA | H | RNA | C | 14 | G | 15 | A | 16 | A | 17 | A | 18 | G | 19 | cWW | ntSH |
107 | HL_8X5V_001 | 8X5V | 0.0885 | 0 | GNRA | B | RNA (110-mer) | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | cWW | ntSH |
108 | HL_4OQU_003 | 4OQU | 0.0795 | 0 | GNRA | A | SAM-I/IV riboswitch | G | 57 | G | 58 | A | 59 | G | 60 | A | 61 | C | 62 | cWW | ntSH |
109 | HL_5FJC_002 | 5FJC | 0.0903 | 0 | GNRA | A | SAM-I riboswitch | A | 49 | G | 50 | A | 51 | A | 52 | A | 53 | U | 54 | cWW | ntSH |
110 | HL_8C3A_066 | 8C3A | 0.1404 | 0 | GNRA | 1 | LSU rRNA | C | 2997 | G | 2998 | A | 2999 | G | 3000 | A | 3001 | G | 3002 | cWW | tSH |
111 | HL_4V9F_066 | 4V9F | 0.1326 | 0 | GNRA | 0 | LSU rRNA | C | 2695 | G | 2696 | A | 2697 | G | 2698 | A | 2699 | G | 2700 | cWW | ntSH |
112 | HL_7A0S_063 | 7A0S | 0.1433 | 0 | GNRA | X | LSU rRNA | C | 2637 | G | 2638 | A | 2639 | G | 2640 | A | 2641 | G | 2642 | cWW | tSH |
113 | HL_7R97_001 | 7R97 | 0.1415 | 0 | GNRA | C | RNA (28-MER) | C | 11 | G | 12 | C | 13 | A | 14 | A | 15 | G | 16 | cWW | tSH |
114 | HL_5TBW_017 | 5TBW | 0.1428 | 0 | GNRA | 1 | LSU rRNA | C | 732 | G | 733 | C | 734 | A | 735 | A | 736 | G | 737 | cWW | ntSH |
115 | HL_4Y1M_003 | 4Y1M | 0.1287 | 0 | GNRA | B | E. coli yybP-ykoY riboswitch | U | 55 | G | 56 | A | 57 | A | 58 | A | 59 | A | 60 | cWW | ntSH |
116 | HL_4V9F_009 | 4V9F | 0.1170 | 0 | GNRA | 0 | LSU rRNA | C | 252 | U | 253 | C | 254 | A | 255 | C | 256 | G | 257 | cWW | ntSH |
117 | HL_5X2G_001 | 5X2G | 0.1229 | 0 | GNRA | B | sgRNA | U | 32 | G | 33 | A | 34 | A | 35 | A | 36 | A | 37 | cWW | ntSH |
118 | HL_5B2P_001 | 5B2P | 0.1367 | 0 | GNRA | B | Guide RNA | C | 35 | G | 36 | A | 37 | A | 38 | A | 39 | G | 40 | cWW | tSH |
119 | HL_6TFF_001 | 6TFF | 0.1053 | 0 | GNRA | A | nadA RNA | C | 27 | G | 28 | A | 29 | A | 30 | A | 31 | G | 32 | cWW | ntSH |
120 | HL_8ITS_002 | 8ITS | 0.0892 | 0 | GNRA | A | RNA (46-MER) | C | 31 | G | 32 | A | 33 | A | 34 | A | 35 | G | 36 | cWW | ntSH |
121 | HL_8JOZ_003 | 8JOZ | 0.0862 | 0 | GNRA | B | tRNA | C | 47|||B | G | 47|||C | A | 47|||D | A | 47|||E | A | 47|||F | G | 47|||G | cWW | ntSH |
122 | HL_5TBW_011 | 5TBW | 0.0986 | 0 | GNRA | 1 | LSU rRNA | U | 382 | G | 383 | A | 384 | A | 385 | A | 386 | A | 387 | cWW | ntSH |
123 | HL_6AEG_003 | 6AEG | 0.1142 | 0 | GNRA | A | RNA (95-MER) | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | cWW | ntSH |
124 | HL_8VTW_063 | 8VTW | 0.1157 | 0 | GNRA | 1A | LSU rRNA | C | 2658 | G | 2659 | A | 2660 | G | 2661 | A | 2662 | G | 2663 | cWW | ntSH |
125 | HL_5J7L_197 | 5J7L | 0.1170 | 0 | GNRA | DA | LSU rRNA | C | 2658 | G | 2659 | A | 2660 | G | 2661 | A | 2662 | G | 2663 | cWW | ntSH |
126 | HL_8ITS_001 | 8ITS | 0.1106 | 0 | GNRA | A | RNA (46-MER) | C | 15 | G | 16 | A | 17 | A | 18 | A | 19 | G | 20 | cWW | ntSH |
127 | HL_5B2T_003 | 5B2T | 0.1402 | 0 | GNRA | A | Guide RNA | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | cWW | ntSH |
128 | HL_3MOJ_001 | 3MOJ | 0.1224 | 0 | GNRA | A | LSU rRNA | G | 2529 | G | 2530 | A | 2531 | A | 2532 | A | 2533 | C | 2534 | cWW | ntSH |
129 | HL_8D28_002 | 8D28 | 0.1199 | 0 | GNRA | B | RNA (33-MER) | C | 13 | G | 14 | A | 15 | A | 16 | A | 17 | G | 18 | cWW | ntSH |
130 | HL_3RW6_001 | 3RW6 | 0.1239 | 0 | GNRA | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | G | 27 | G | 28 | A | 29 | A | 30 | A | 31 | C | 32 | cWW | tSH |
131 | HL_4RUM_002 | 4RUM | 0.1132 | 0 | GNRA | A | NiCo riboswitch RNA | C | 51 | G | 52 | A | 53 | A | 54 | A | 55 | G | 56 | cWW | ntSH |
132 | HL_1MZP_001 | 1MZP | 0.1391 | 0 | GNRA | B | fragment of 23S rRNA | C | 25 | G | 26 | C | 27 | A | 28 | A | 29 | G | 30 | cWW | ntSH |
133 | HL_7ZO1_003 | 7ZO1 | 0.1296 | 0 | GNRA | A | CD34 sgRNA | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | cWW | ntSH |
134 | HL_3NDB_002 | 3NDB | 0.1368 | 0 | GNRA | M | SRP RNA | C | 208 | G | 209 | G | 210 | A | 211 | A | 212 | G | 213 | cWW | tSH |
135 | HL_8VTW_045 | 8VTW | 0.1307 | 0 | GNRA | 1A | LSU rRNA | C | 1806 | G | 1807 | U | 1808 | A | 1809 | A | 1810 | G | 1811 | cWW | ntSH |
136 | HL_4V9F_020 | 4V9F | 0.1257 | 0 | GNRA | 0 | LSU rRNA | G | 690 | G | 691 | A | 692 | A | 693 | A | 694 | C | 695 | cWW | ntSH |
137 | HL_5J7L_004 | 5J7L | 0.1484 | 0 | GNRA | AA | SSU rRNA | C | 186 | G | 187 | C | 188 | A | 189 | A | 190 | G | 191 | cWW | ntSH |
138 | HL_8G9Z_003 | 8G9Z | 0.1413 | 0 | GNRA related | E | Selenocysteine transfer RNA | C | 47||A|C | U | 47||A|D | A | 47||A|E | G | 47||A|F | C | 47||A|G | G | 47||A|H | cWW | ntSH |
139 | HL_3PDR_001 | 3PDR | 0.1571 | 0 | GNRA | X | M-box riboswitch (ykoK leader) | C | 68 | C | 69 | A | 70 | A | 71 | A | 72 | G | 73 | cWW | ntSH |
140 | HL_1L9A_002 | 1L9A | 0.1242 | 0 | GNRA | B | signal recognition particle RNA S domain | G | 197 | G | 198 | A | 199 | A | 200 | A | 201 | C | 202 | cWW | ntSH |
141 | HL_3OXE_002 | 3OXE | 0.1645 | 0 | GNRA related | A | domain II of glycine riboswitch | G | 49 | G | 50 | A | 51 | A | 52 | A | 53 | C | 54 | cWW | ntSH |
142 | HL_7QQX_003 | 7QQX | 0.1579 | 0 | GNRA | A | FANCF sgRNA | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | cWW | ntSH |
143 | HL_3KTW_002 | 3KTW | 0.1544 | 0 | GNRA | C | SRP RNA | C | 209 | G | 210 | G | 211 | A | 212 | A | 213 | G | 214 | cWW | ntSH |
144 | HL_5F9R_003 | 5F9R | 0.1680 | 0 | GNRA | A | RNA (116-MER) | U | 90 | G | 91 | A | 92 | A | 93 | A | 94 | A | 95 | cWW | ntSH |
145 | HL_3P22_001 | 3P22 | 0.2196 | 0 | GNRA | A | Core ENE hairpin from KSHV PAN RNA | C | 17 | G | 18 | A | 19 | A | 20 | A | 21 | G | 22 | cWW | ntSH |
146 | HL_5J7L_148 | 5J7L | 0.2508 | 1 | GNRA | DA | LSU rRNA | C | 487 | G | 488 | G | 489 | G | 491 | A | 492 | G | 493 | cWW | tSH |
147 | HL_4W90_003 | 4W90 | 0.1909 | 0 | GNRA | C | cyclic di-AMP riboswitch | C | 82 | G | 83 | A | 84 | A | 85 | A | 86 | G | 87 | cWW | ntSH |
148 | HL_8VTW_015 | 8VTW | 0.1866 | 0 | GNRA | 1A | LSU rRNA | C | 487 | G | 488 | G | 489 | G | 491 | A | 492 | G | 493 | cWW | tSH |
149 | HL_4WF9_016 | 4WF9 | 0.2056 | 0 | GNRA | X | LSU rRNA | C | 533 | G | 534 | G | 535 | A | 536 | A | 537 | G | 538 | cWW | ntSH |
150 | HL_7A0S_016 | 7A0S | 0.2074 | 0 | GNRA | X | LSU rRNA | C | 498 | G | 499 | G | 500 | G | 501 | A | 502 | G | 503 | cWW | ntSH |
151 | HL_5DDO_001 | 5DDO | 0.1921 | 0 | GNRA | A | L-glutamine riboswitch (58-MER) | G | 11 | G | 12 | A | 13 | A | 14 | A | 15 | C | 16 | cWW | |
152 | HL_4AOB_002 | 4AOB | 0.1338 | 0 | GNRA | A | SAM-I riboswitch | A | 49 | A | 50 | A | 51 | A | 52 | A | 53 | U | 54 | cWW | tSH |
153 | HL_359D_001 | 359D | 0.1328 | 0 | GNRA | B | RNA HAMMERHEAD RIBOZYME | C | 154 | G | 31|||L | U | 32|||L | A | 33|||L | A | 34|||L | G | 164 | cWW | |
154 | HL_3IWN_001 | 3IWN | 0.1069 | 0 | GNRA | A | C-di-GMP riboswitch | C | 21 | G | 22 | A | 23 | A | 24 | A | 25 | G | 26 | cWW | ntSH |
155 | HL_2IL9_003 | 2IL9 | 0.1275 | 0 | GNRA | A | Ribosomal Binding Domain of the IRES RNA | C | 6119 | G | 6119|||A | A | 6119|||B | A | 6119|||C | A | 6119|||D | G | 6119|||E | ncWW | tSH |
156 | HL_1MFQ_002 | 1MFQ | 0.1480 | 0 | GNRA | A | SRP RNA | G | 197 | G | 198 | A | 199 | A | 200 | A | 201 | C | 202 | cWW | tSH |
157 | HL_6JDV_002 | 6JDV | 0.1692 | 0 | GNRA | B | sgRNA | U | 86 | G | 87 | A | 88 | A | 89 | A | 90 | A | 91 | cWW | tSH |
158 | HL_4V9F_040 | 4V9F | 0.1795 | 0 | GNRA | 0 | LSU rRNA | G | 1628 | G | 1629 | A | 1630 | A | 1631 | A | 1632 | C | 1633 | cWW | ntSH |
159 | HL_4LFB_003 | 4LFB | 0.1932 | 0 | GNRA | A | SSU rRNA | G | 158 | G | 159 | A | 160 | A | 161 | A | 162 | C | 163 | cWW | ntSH |
160 | HL_8C3A_019 | 8C3A | 0.1632 | 0 | GNRA | 1 | LSU rRNA | G | 840 | G | 841 | A | 842 | A | 843 | A | 844 | C | 845 | cWW | ntSH |
161 | HL_5TBW_019 | 5TBW | 0.1106 | 0 | GNRA | 1 | LSU rRNA | G | 844 | G | 845 | A | 846 | A | 847 | A | 848 | C | 849 | cWW | ntSH |
162 | HL_5TBW_065 | 5TBW | 0.1277 | 0 | GNRA | 1 | LSU rRNA | C | 3025 | G | 3026 | A | 3027 | G | 3028 | A | 3029 | G | 3030 | cWW | ntSH |
163 | HL_5J7L_003 | 5J7L | 0.1475 | 0 | GNRA | AA | SSU rRNA | G | 158 | G | 159 | A | 160 | A | 161 | A | 162 | C | 163 | cWW | ntSH |
164 | HL_7ENI_001 | 7ENI | 0.1369 | 0 | GNRA | B | sgRNA (74-MER) | G | 34 | G | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | ntSH |
165 | HL_4V9F_023 | 4V9F | 0.0932 | 0 | GNRA | 0 | LSU rRNA | C | 804 | G | 805 | A | 806 | A | 807 | A | 808 | G | 809 | cWW | ntSH |
166 | HL_1Q96_001 | 1Q96 | 0.0945 | 0 | GNRA | A | sarcin/ricin 28S rRNA | U | 13 | G | 14 | A | 15 | G | 16 | A | 17 | A | 18 | cWW | ntSH |
167 | HL_7ELQ_001 | 7ELQ | 0.1141 | 0 | GNRA | A | NMT1 RNA | C | 22 | G | 23 | A | 24 | A | 25 | A | 26 | G | 27 | cWW | ntSH |
168 | HL_5M0J_001 | 5M0J | 0.1658 | 0 | GNRA | E | ASH1 E3 (28 nt-loop) | C | 12 | G | 13 | A | 14 | A | 15 | A | 16 | G | 17 | cWW | ntSH |
169 | HL_5M0J_002 | 5M0J | 0.1302 | 0 | GNRA | F | ASH1 E3 (28 nt-loop) | C | 12 | G | 13 | A | 14 | A | 15 | A | 16 | G | 17 | cWW | ntSH |
170 | HL_5M0I_001 | 5M0I | 0.1295 | 0 | GNRA | E | ASH1-E3 element, RNA (28-MER) | C | 12 | G | 13 | A | 14 | A | 15 | A | 16 | G | 17 | cWW | ntSH |
171 | HL_3LQX_001 | 3LQX | 0.1007 | 0 | GNRA | B | SRP RNA | C | 153 | G | 154 | A | 155 | A | 156 | A | 157 | G | 158 | cWW | tSH |
172 | HL_5M0I_002 | 5M0I | 0.1024 | 0 | GNRA | F | ASH1-E3 element, RNA (28-MER) | C | 12 | G | 13 | A | 14 | A | 15 | A | 16 | G | 17 | cWW | ntSH |
173 | HL_1HMH_003 | 1HMH | 0.0874 | 0 | GNRA | E | HAMMERHEAD RIBOZYME-RNA STRAND | C | 104 | G | 21|||L | A | 22|||L | A | 23|||L | A | 24|||L | G | 114 | cWW | ntSH |
174 | HL_6N2V_003 | 6N2V | 0.1084 | 0 | GNRA | A | X. oryzae Mn riboswitch optimized construct | C | 76 | G | 77 | A | 78 | A | 79 | A | 80 | G | 81 | cWW | ntSH |
175 | HL_4Y1M_002 | 4Y1M | 0.1043 | 0 | GNRA | B | E. coli yybP-ykoY riboswitch | C | 24 | G | 25 | A | 26 | A | 27 | A | 28 | G | 29 | cWW | ntSH |
176 | HL_8C3A_216 | 8C3A | 0.1220 | 0 | GNRA | CM | SSU rRNA | C | 1106 | G | 1107 | C | 1108 | A | 1109 | A | 1110 | G | 1111 | cWW | ntSH |
177 | HL_4V88_211 | 4V88 | 0.1386 | 0 | GNRA | A6 | SSU rRNA | C | 1121 | G | 1122 | C | 1123 | A | 1124 | A | 1125 | G | 1126 | cWW | ntSH |
178 | HL_5J7L_020 | 5J7L | 0.1740 | 0 | GNRA | AA | SSU rRNA | C | 897 | G | 898 | C | 899 | A | 900 | A | 901 | G | 902 | cWW | ntSH |
179 | HL_4LFB_020 | 4LFB | 0.1524 | 0 | GNRA | A | SSU rRNA | C | 897 | G | 898 | C | 899 | A | 900 | A | 901 | G | 902 | cWW | ntSH |
180 | HL_4V9F_048 | 4V9F | 0.1752 | 0 | GNRA | 0 | LSU rRNA | C | 1862 | G | 1863 | C | 1864 | A | 1865 | A | 1866 | G | 1867 | cWW | ntSH |
181 | HL_8HZL_002 | 8HZL | 0.1225 | 0 | GNRA | B | RNA (84-MER) | C | 49 | G | 50 | A | 51 | A | 52 | A | 53 | G | 54 | cWW | ntSH |
182 | HL_3NVI_002 | 3NVI | 0.1351 | 0 | GNRA | F | RNA (24-mer) | C | 9 | G | 10 | A | 11 | A | 12 | A | 13 | G | 14 | cWW | ntSH |
183 | HL_4NLF_001 | 4NLF | 0.1397 | 0 | GNRA | A | 23S ribosomal RNA Sarcin Ricin Loop | C | 2658 | G | 2659 | A | 2660 | G | 2661 | A | 2662 | G | 2663 | cWW | ntSH |
184 | HL_4V9F_072 | 4V9F | 0.1589 | 0 | GNRA | 9 | 5S rRNA | C | 89 | G | 90 | C | 91 | G | 92 | A | 93 | G | 94 | cWW | ntSH |
185 | HL_5TBW_186 | 5TBW | 0.1233 | 0 | GNRA | AS | 5S rRNA | G | 88 | G | 89 | U | 90 | G | 91 | A | 92 | C | 93 | cWW | ntSH |
186 | HL_4LFB_010 | 4LFB | 0.1231 | 0 | GNRA | A | SSU rRNA | C | 379 | G | 380 | C | 381 | A | 382 | A | 383 | G | 384 | cWW | ntSH |
187 | HL_5J7L_010 | 5J7L | 0.1036 | 0 | GNRA | AA | SSU rRNA | C | 379 | G | 380 | C | 381 | A | 382 | A | 383 | G | 384 | cWW | ntSH |
188 | HL_8C3A_074 | 8C3A | 0.1160 | 0 | GNRA | 3 | 5S rRNA | G | 88 | G | 89 | A | 90 | G | 91 | A | 92 | C | 93 | cWW | ntSH |
189 | HL_7U4A_003 | 7U4A | 0.1289 | 0 | GNRA | A | RNA (70-MER) | C | 62 | G | 63 | A | 64 | A | 65 | A | 66 | G | 67 | cWW | ntSH |
190 | HL_3E5C_001 | 3E5C | 0.1314 | 0 | GNRA | A | SMK box (SAM-III) Riboswitch | G | 18 | G | 19 | A | 20 | A | 21 | A | 22 | C | 23 | cWW | tSH |
191 | HL_3AM1_003 | 3AM1 | 0.1416 | 0 | GNRA | B | ASL-truncated tRNA | C | 45 | G | 46 | A | 47 | G | 48 | A | 49 | G | 50 | cWW | ntSH |
192 | HL_5TPY_004 | 5TPY | 0.0938 | 0 | GNRA | A | RNA (71-MER) | C | 13 | G | 14 | A | 15 | A | 16 | A | 17 | G | 18 | cWW | ntSH |
193 | HL_5DDP_001 | 5DDP | 0.0857 | 0 | GNRA | A | glnA | G | 11 | G | 12 | A | 13 | A | 14 | A | 15 | C | 16 | cWW | ntSH |
194 | HL_8VTW_057 | 8VTW | 0.1077 | 0 | GNRA | 1A | LSU rRNA | C | 2374 | G | 2375 | A | 2376 | A | 2377 | A | 2378 | G | 2379 | cWW | ntSH |
195 | HL_7ZO1_001 | 7ZO1 | 0.1276 | 0 | GNRA | A | CD34 sgRNA | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | cWW | |
196 | HL_6CZR_081 | 6CZR | 0.1732 | 0 | GNRA | 1a | SSU rRNA | C | 375 | G | 376 | C | 377 | A | 378 | A | 379 | G | 380 | cWW | |
197 | HL_7QQP_001 | 7QQP | 0.1529 | 0 | GNRA | A | AAVS1 sgRNA | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | cWW | ntSH |
198 | HL_7QR0_001 | 7QR0 | 0.1341 | 0 | GNRA | A | TRAC sgRNA | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | cWW | ntSH |
199 | HL_7QR0_003 | 7QR0 | 0.1864 | 0 | GNRA | A | TRAC sgRNA | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | cWW | ntSH |
200 | HL_5FQ5_003 | 5FQ5 | 0.2340 | 0 | GNRA | A | SGRNA | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | ncWW | ntSH |
201 | HL_4WF9_060 | 4WF9 | 0.1764 | 0 | GNRA | X | LSU rRNA | C | 2685 | G | 2686 | A | 2687 | G | 2688 | A | 2689 | G | 2690 | cWW | ntSH |
202 | HL_6UFH_005 | 6UFH | 0.2138 | 0 | GNRA | A | RNA (167-MER) | C | 145 | G | 146 | A | 147 | A | 148 | A | 149 | G | 150 | cWW | ntSH |
203 | HL_7A0S_047 | 7A0S | 0.1981 | 0 | GNRA | X | LSU rRNA | U | 1856 | G | 1857 | C | 1858 | A | 1859 | A | 1860 | G | 1861 | cWW | |
204 | HL_8VTW_046 | 8VTW | 0.2045 | 0 | GNRA | 1A | LSU rRNA | U | 1864 | G | 1865 | C | 1866 | A | 1876 | A | 1877 | G | 1878 | cWW | |
205 | HL_5TBW_016 | 5TBW | 0.1948 | 0 | GNRA | 1 | LSU rRNA | U | 707 | G | 708 | A | 709 | A | 710 | A | 711 | G | 712 | cWW | |
206 | HL_8C3A_016 | 8C3A | 0.1814 | 0 | GNRA | 1 | LSU rRNA | U | 705 | G | 706 | A | 707 | A | 708 | A | 709 | G | 710 | cWW | |
207 | HL_8C3A_060 | 8C3A | 0.1784 | 0 | GNRA | 1 | LSU rRNA | U | 2716 | G | 2717 | A | 2718 | A | 2719 | A | 2720 | G | 2721 | cWW | |
208 | HL_5TBW_059 | 5TBW | 0.2000 | 0 | GNRA | 1 | LSU rRNA | U | 2744 | G | 2745 | A | 2746 | A | 2747 | A | 2748 | G | 2749 | cWW | |
209 | HL_6CB3_006 | 6CB3 | 0.2154 | 0 | GNRA | B | RNA (99-MER) | C | 76 | G | 77 | A | 78 | A | 79 | A | 80 | G | 81 | cWW | |
210 | HL_7JNH_001 | 7JNH | 0.2177 | 0 | GNRA | B | Core double ENE RNA (Xtal construct) from Oryza sativa transposon | C | 43 | G | 44 | A | 45 | A | 46 | A | 47 | G | 48 | cWW | |
211 | HL_7MRL_002 | 7MRL | 0.2049 | 0 | GNRA | A | tRNA | G | 34 | G | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | |
212 | HL_4WF9_065 | 4WF9 | 0.2421 | 0 | GNRA | X | LSU rRNA | G | 2876 | G | 2877 | U | 2878 | G | 2879 | A | 2880 | C | 2881 | cWW | |
213 | HL_4LVW_002 | 4LVW | 0.2381 | 0 | GNRA | A | THF riboswitch | C | 58 | G | 59 | A | 60 | G | 61 | A | 62 | G | 63 | cWW | |
214 | HL_8VTW_070 | 8VTW | 0.2171 | 0 | GNRA | 1B | 5S rRNA | G | 86 | G | 87 | C | 88 | G | 89 | A | 90 | C | 91 | cWW | |
215 | HL_7A0S_070 | 7A0S | 0.2095 | 0 | GNRA | Y | 5S rRNA | C | 88 | G | 89 | C | 90 | A | 91 | G | 92 | G | 93 | cWW | |
216 | HL_5J7L_191 | 5J7L | 0.1470 | 0 | GNRA | DA | LSU rRNA | C | 2374 | G | 2375 | A | 2376 | A | 2377 | A | 2378 | G | 2379 | cWW | |
217 | HL_3NKB_002 | 3NKB | 0.2059 | 0 | GNRA | B | The hepatitis delta virus ribozyme | C | 49 | G | 50 | A | 51 | A | 52 | A | 53 | G | 54 | cWW | |
218 | HL_3E5C_002 | 3E5C | 0.2035 | 0 | GNRA | A | SMK box (SAM-III) Riboswitch | C | 41 | G | 42 | A | 43 | A | 44 | A | 45 | G | 46 | cWW | |
219 | HL_4PQV_001 | 4PQV | 0.2402 | 0 | GNRA | A | Flavivirus 3' UTR stem loop IV | C | 13 | G | 14 | A | 15 | A | 16 | A | 17 | G | 18 | cWW | |
220 | HL_3NPQ_001 | 3NPQ | 0.2089 | 0 | GNRA | A | S-ADENOSYLHOMOCYSTEINE RIBOSWITCH | C | 20 | G | 21 | A | 22 | G | 23 | A | 24 | G | 25 | cWW | |
221 | HL_4QK9_002 | 4QK9 | 0.1769 | 0 | GNRA | A | C-di-AMP riboswitch | C | 56 | G | 57 | U | 58 | A | 59 | A | 60 | G | 61 | cWW | |
222 | HL_2OIU_003 | 2OIU | 0.1715 | 0 | GNRA | P | L1 Ribozyme RNA Ligase | C | 59 | G | 60 | A | 61 | A | 62 | A | 63 | G | 64 | cWW | |
223 | HL_7MKY_002 | 7MKY | 0.1369 | 0 | GNRA | A | RNA (66-MER) | G | 40 | G | 41 | A | 42 | A | 43 | A | 44 | C | 45 | cWW | |
224 | HL_6JQ5_002 | 6JQ5 | 0.1514 | 0 | GNRA | A | RNA (82-MER) | C | 45 | G | 46 | A | 47 | A | 48 | A | 49 | G | 50 | cWW | |
225 | HL_6U8D_002 | 6U8D | 0.1278 | 0 | GNRA | A | JIIIabc RNA (68-MER) | G | 180 | G | 198 | A | 199 | A | 200 | A | 201 | C | 219 | cWW | |
226 | HL_6CB3_005 | 6CB3 | 0.1894 | 0 | GNRA | B | RNA (99-MER) | G | 50 | G | 51 | A | 52 | A | 53 | A | 54 | C | 55 | cWW | |
227 | HL_6CU1_002 | 6CU1 | 0.1939 | 0 | GNRA | A | Y RNA-like | C | 42 | G | 43 | A | 44 | A | 45 | A | 46 | G | 47 | cWW | |
228 | HL_8VU0_002 | 8VU0 | 0.1999 | 0 | GNRA | C | tRNA | C | 33 | G | 34 | A | 35 | A | 36 | A | 37 | G | 38 | cWW | |
229 | HL_6UFG_004 | 6UFG | 0.1585 | 0 | GNRA | A | RNA (166-MER) | C | 105 | G | 106 | A | 107 | A | 108 | A | 109 | G | 110 | cWW | ntSH |
230 | HL_1U9S_004 | 1U9S | 0.1330 | 0 | GNRA | A | RIBONUCLEASE P | G | 204 | G | 205 | C | 206 | A | 207 | A | 208 | C | 209 | cWW | ntSH |
231 | HL_8VTW_019 | 8VTW | 0.1575 | 0 | GNRA | 1A | LSU rRNA | G | 629 | G | 630 | A | 631 | A | 632 | A | 633 | C | 634 | cWW | |
232 | HL_5J7L_202 | 5J7L | 0.1706 | 0 | GNRA | DA | LSU rRNA | A | 2856 | G | 2857 | C | 2858 | G | 2859 | A | 2860 | U | 2861 | cWW | |
233 | HL_7A0S_068 | 7A0S | 0.1867 | 0 | GNRA | X | LSU rRNA | A | 2831 | G | 2832 | C | 2833 | A | 2834 | A | 2835 | U | 2836 | cWW | ntSH |
234 | HL_4LFB_028 | 4LFB | 0.1932 | 0 | GNRA | A | SSU rRNA | G | 1265 | G | 1266 | C | 1267 | A | 1268 | A | 1269 | C | 1270 | cWW | |
235 | HL_4WF9_020 | 4WF9 | 0.1940 | 0 | GNRA | X | LSU rRNA | C | 674 | G | 675 | A | 676 | A | 677 | A | 678 | G | 679 | cWW | |
236 | HL_6DME_001 | 6DME | 0.1750 | 0 | GNRA | A | ppGpp Riboswitch | C | 25 | G | 26 | A | 27 | G | 28 | A | 29 | G | 30 | cWW | |
237 | HL_8VTW_068 | 8VTW | 0.2035 | 0 | GNRA | 1A | LSU rRNA | C | 2856 | G | 2857 | C | 2858 | G | 2859 | A | 2860 | G | 2861 | cWW | |
238 | HL_5TBW_064 | 5TBW | 0.1830 | 0 | GNRA | 1 | LSU rRNA | C | 2963 | G | 2964 | U | 2965 | G | 2966 | A | 2967 | G | 2968 | cWW | |
239 | HL_4V9F_065 | 4V9F | 0.2070 | 0 | GNRA | 0 | LSU rRNA | C | 2629 | G | 2630 | U | 2631 | G | 2632 | A | 2633 | G | 2634 | cWW | |
240 | HL_5J7L_196 | 5J7L | 0.1922 | 0 | GNRA | DA | LSU rRNA | C | 2594 | G | 2595 | U | 2596 | G | 2597 | A | 2598 | G | 2599 | cWW | |
241 | HL_7KKV_001 | 7KKV | 0.2235 | 0 | GNRA | B | OLE* RNA | G | 500 | G | 501 | U | 502 | G | 503 | A | 504 | C | 505 | cWW | |
242 | HL_8C3A_219 | 8C3A | 0.2191 | 0 | GNRA | CM | SSU rRNA | A | 1281 | G | 1282 | U | 1283 | G | 1284 | A | 1285 | U | 1286 | cWW | |
243 | HL_4V88_214 | 4V88 | 0.2444 | 0 | GNRA | A6 | SSU rRNA | A | 1296 | G | 1297 | U | 1298 | G | 1299 | A | 1300 | U | 1301 | cWW | |
244 | HL_4LFB_024 | 4LFB | 0.2507 | 0 | GNRA | A | SSU rRNA | C | 1076 | G | 1077 | U | 1078 | G | 1079 | A | 1080 | G | 1081 | cWW | |
245 | HL_5J7L_023 | 5J7L | 0.2501 | 0 | GNRA | AA | SSU rRNA | U | 1076 | G | 1077 | U | 1078 | G | 1079 | A | 1080 | A | 1081 | cWW | |
246 | HL_5J7L_027 | 5J7L | 0.2627 | 0 | GNRA | AA | SSU rRNA | C | 1265 | G | 1266 | C | 1267 | G | 1268 | A | 1269 | G | 1270 | cWW | |
247 | HL_3IGI_003 | 3IGI | 0.2006 | 0 | GNRA | A | Group IIC intron | G | 89 | G | 90 | C | 91 | G | 92 | A | 93 | C | 94 | cWW | |
248 | HL_2Z75_004 | 2Z75 | 0.2288 | 0 | GNRA | B | glmS ribozyme | G | 113 | G | 114 | C | 115 | G | 116 | A | 117 | C | 118 | cWW | |
249 | HL_8C3A_010 | 8C3A | 0.2172 | 0 | GNRA | 1 | LSU rRNA | A | 357 | G | 358 | U | 359 | G | 360 | A | 361 | U | 362 | cWW | |
250 | HL_5TBW_010 | 5TBW | 0.2055 | 0 | GNRA | 1 | LSU rRNA | A | 357 | G | 358 | U | 359 | G | 360 | A | 361 | U | 362 | cWW | |
251 | HL_4V9F_015 | 4V9F | 0.2040 | 0 | GNRA | 0 | LSU rRNA | U | 468 | G | 469 | U | 470 | G | 471 | A | 472 | A | 473 | cWW | |
252 | HL_4WF9_015 | 4WF9 | 0.1922 | 0 | GNRA | X | LSU rRNA | C | 508 | G | 509 | U | 510 | G | 511 | A | 512 | G | 513 | cWW | |
253 | HL_8VTW_014 | 8VTW | 0.1789 | 0 | GNRA | 1A | LSU rRNA | C | 462 | G | 463 | U | 464 | G | 465 | A | 466 | G | 467 | cWW | |
254 | HL_5J7L_147 | 5J7L | 0.1875 | 0 | GNRA | DA | LSU rRNA | C | 462 | G | 463 | U | 464 | G | 465 | A | 466 | G | 467 | cWW | |
255 | HL_3G9C_008 | 3G9C | 0.1793 | 0 | GNRA | Q | GLMS RIBOZYME | G | 108 | G | 109 | U | 110 | G | 111 | A | 112 | C | 113 | cWW | |
256 | HL_7A0S_015 | 7A0S | 0.1948 | 0 | GNRA | X | LSU rRNA | C | 473 | G | 474 | U | 475 | G | 476 | A | 477 | G | 478 | cWW | |
257 | HL_8C3A_065 | 8C3A | 0.1789 | 0 | GNRA | 1 | LSU rRNA | C | 2935 | G | 2936 | U | 2937 | G | 2938 | A | 2939 | G | 2940 | cWW | |
258 | HL_8VTW_031 | 8VTW | 0.2291 | 0 | GNRA | 1A | LSU rRNA | C | 1222 | G | 1223 | C | 1224 | G | 1225 | A | 1226 | G | 1227 | cWW | |
259 | HL_4YAZ_003 | 4YAZ | 0.2251 | 0 | GNRA | R | Cyclic di-GMP-I riboswitch | C | 25 | G | 26 | C | 27 | G | 28 | A | 29 | G | 30 | cWW | |
260 | HL_4V9F_017 | 4V9F | 0.2351 | 0 | GNRA | 0 | LSU rRNA | C | 576 | G | 577 | C | 578 | G | 579 | A | 580 | G | 581 | cWW | |
261 | HL_4WFL_003 | 4WFL | 0.1966 | 0 | GNRA | A | LSRP RNA | G | 81 | G | 82 | U | 83 | A | 84 | A | 85 | C | 86 | cWW | |
262 | HL_3W3S_003 | 3W3S | 0.2344 | 0 | GNRA | B | Selenocysteine transfer RNA | C | 47|||F | G | 47|||G | C | 47|||H | A | 47|||I | A | 47|||J | G | 47|||K | cWW | |
263 | HL_5U3G_002 | 5U3G | 0.1816 | 0 | GNRA | B | Guanidine-I riboswitch | C | 47 | G | 48 | A | 49 | A | 50 | A | 51 | G | 52 | cWW | ntSH |
264 | HL_7A0S_062 | 7A0S | 0.2166 | 0 | GNRA | X | LSU rRNA | C | 2573 | G | 2574 | U | 2575 | G | 2576 | A | 2577 | G | 2578 | cWW | |
265 | HL_8VTW_062 | 8VTW | 0.2117 | 0 | GNRA | 1A | LSU rRNA | C | 2594 | G | 2595 | U | 2596 | G | 2597 | A | 2598 | G | 2599 | cWW | |
266 | HL_4WF9_059 | 4WF9 | 0.2666 | 0 | GNRA | X | LSU rRNA | C | 2621 | G | 2622 | U | 2623 | G | 2624 | A | 2625 | G | 2626 | cWW | |
267 | HL_8C3A_030 | 8C3A | 0.2837 | 0 | GNRA | 1 | LSU rRNA | U | 1399 | G | 1400 | U | 1401 | A | 1402 | A | 1403 | A | 1404 | cWW | |
268 | HL_8C3A_036 | 8C3A | 0.3084 | 0 | GNRA | 1 | LSU rRNA | G | 1630 | G | 1631 | C | 1632 | A | 1633 | A | 1634 | C | 1635 | cWW | |
269 | HL_5TBW_030 | 5TBW | 0.2848 | 0 | GNRA | 1 | LSU rRNA | C | 1403 | G | 1404 | U | 1405 | A | 1406 | A | 1407 | G | 1408 | cWW | |
270 | HL_5TBW_036 | 5TBW | 0.3008 | 0 | GNRA | 1 | LSU rRNA | G | 1634 | G | 1635 | U | 1636 | A | 1637 | A | 1638 | C | 1639 | cWW | |
271 | HL_2BTE_003 | 2BTE | 0.2989 | 0 | GNRA | B | tRNA | C | 46 | G | 47 | C | 47|||A | A | 47|||B | A | 47|||C | G | 47|||D | cWW | |
272 | HL_4V9F_033 | 4V9F | 0.3033 | 0 | GNRA | 0 | LSU rRNA | C | 1326 | G | 1327 | A | 1328 | G | 1329 | A | 1330 | G | 1331 | cWW | |
273 | HL_6CZR_095 | 6CZR | 0.2408 | 0 | GNRA | 1a | SSU rRNA | C | 1059 | G | 1060 | U | 1061 | G | 1062 | A | 1063 | G | 1064 | cWW | |
274 | HL_6UFH_004 | 6UFH | 0.2503 | 0 | GNRA | A | RNA (167-MER) | C | 106 | G | 107 | A | 108 | A | 109 | A | 110 | G | 111 | cWW | |
275 | HL_6YMC_001 | 6YMC | 0.2255 | 0 | GNRA | A | RNA (26-MER) | G | 11 | G | 12 | A | 13 | A | 14 | A | 15 | C | 16 | cWW | ntSH |
276 | HL_4V88_218 | 4V88 | 0.2310 | 0 | GNRA | A6 | SSU rRNA | C | 1501 | G | 1502 | A | 1503 | G | 1504 | A | 1505 | G | 1506 | cWW | ntSH |
277 | HL_8C3A_223 | 8C3A | 0.2016 | 0 | GNRA | CM | SSU rRNA | C | 1488 | G | 1489 | A | 1490 | G | 1491 | A | 1492 | G | 1493 | cWW | ntSH |
278 | HL_6AZ4_001 | 6AZ4 | 0.2131 | 0 | GNRA | A | RNA (32-MER) | U | 20 | G | 21 | A | 22 | A | 23 | A | 24 | G | 25 | cWW | ntSH |
279 | HL_6CB3_004 | 6CB3 | 0.1757 | 0 | GNRA | B | RNA (99-MER) | G | 20 | G | 21 | A | 22 | A | 23 | A | 24 | C | 25 | cWW | ntSH |
280 | HL_4V9F_070 | 4V9F | 0.1788 | 0 | GNRA | 0 | LSU rRNA | G | 2876 | G | 2877 | U | 2878 | A | 2879 | A | 2880 | C | 2881 | cWW | ntSH |
281 | HL_7QQX_001 | 7QQX | 0.2428 | 0 | GNRA | A | FANCF sgRNA | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | cWW | |
282 | HL_4QK9_001 | 4QK9 | 0.2667 | 0 | GNRA variation | A | C-di-AMP riboswitch | C | 14 | U | 15 | G | 16 | A | 17 | A | 18 | G | 19 | cWW | |
283 | HL_7QR8_001 | 7QR8 | 0.2556 | 0 | GNRA variation | A | PTPRC sgRNA | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | cWW | |
284 | HL_5J7L_180 | 5J7L | 0.5831 | 0 | GNRA variation | DA | LSU rRNA | C | 1868 | G | 1869 | C | 1870 | A | 1871 | A | 1872 | G | 1873 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAAAG | 77 |
GGAAAC | 41 |
AGAAAU | 17 |
UGAAAA | 16 |
CGCAAG | 16 |
CGAGAG | 15 |
UGAAAG | 13 |
CGUGAG | 13 |
CGUAAG | 6 |
CGCGAG | 6 |
AGUGAU | 5 |
GGUAAC | 4 |
GGUGAC | 4 |
UGAGAG | 3 |
GGUAAGC | 3 |
GGAGAC | 3 |
CGGGAG | 3 |
CGGAAG | 3 |
GGCGAC | 3 |
GGCAAC | 3 |
AGAAAGU | 2 |
CUAACG | 2 |
CUAGCG | 2 |
UGCAAG | 2 |
UGUGAA | 2 |
UGCAUA | 1 |
UUUCAAG | 1 |
CGAAAUG | 1 |
UUAGCG | 1 |
GGAAAUC | 1 |
CGGAACG | 1 |
AGCUAACU | 1 |
UGAUAAGG | 1 |
CGAUAACG | 1 |
CGUAGG | 1 |
CUCACG | 1 |
CCAAAG | 1 |
CGGCGAG | 1 |
AAAAAU | 1 |
UGAGAA | 1 |
CGCAGG | 1 |
AGCGAU | 1 |
AGCAAU | 1 |
UGUAAA | 1 |
CUGAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAAA | 164 |
GUGA | 24 |
GAGA | 22 |
GCAA | 22 |
GUAA | 11 |
GCGA | 10 |
UAGC | 3 |
GUAAG | 3 |
GGGA | 3 |
GGAA | 3 |
GAAAU | 2 |
GAAAG | 2 |
UAAC | 2 |
GCAU | 1 |
UUCAA | 1 |
GGAAC | 1 |
GCUAAC | 1 |
GAUAAG | 1 |
GAUAAC | 1 |
GUAG | 1 |
UCAC | 1 |
CAAA | 1 |
GGCGA | 1 |
AAAA | 1 |
GCAG | 1 |
UGAA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA (277)
- GNRA variation (4)
- GNRA related (3)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.04 | Avg 0.22 | Max 0.78
Coloring options: