#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-62-5
1 HL_5VSU_0015VSU0.39470GNRA variationI U6 snRNAU70G71C72A73U74A75cWW
2 HL_4V88_2174V880.54761GNRAA6 SSU rRNAU1396U1397U1398A1400A1401G1402cWWntSH
3 HL_1G1X_0041G1X0.36560GNRAI16S RIBOSOMAL RNAC590G591A592A593A594G649cWW
4 HL_4KQY_0024KQY0.34870GNRAA SAM-I riboswitchC60G61A62A63A64G65ncWWntSH
5 HL_6CZR_0986CZR0.29720GNRA1a SSU rRNAC1148G1149A1150A1151A1152G1153cWWntSH
6 HL_5TBW_0235TBW0.28941GNRA1 LSU rRNAC1023G1024A1025A1026A1027G1029cWW
7 HL_6JDV_0016JDV0.30090GNRABsgRNAG48G49A50A51A52C53cWW
8 HL_4LFB_0224LFB0.30460GNRAA SSU rRNAU1012G1013A1014A1015A1016G1017cWWntSH
9 HL_5TBW_0475TBW0.28701GNRA1 LSU rRNAA2164G2165A2166A2167A2168U2170cWWntSH
10 HL_8C3A_0478C3A0.25501GNRA1 LSU rRNAA2142G2143A2144A2145A2146U2148cWWntSH
11 HL_4LFB_0074LFB0.23710GNRAA SSU rRNAU296G297A298G299A300G301cWWntSH
12 HL_5J7L_0075J7L0.20920GNRAAA SSU rRNAU296G297A298G299A300G301cWWntSH
13 HL_3RG5_0073RG50.18210GNRABSelenocysteine transfer RNAU47|||CU47|||DA47|||EG47|||FC47|||GG47|||HcWWntSHa
14 HL_6CZR_0786CZR0.23600GNRA1a SSU rRNAU292G293A294G295A296G297cWWntSH
15 HL_4V9F_0284V9F0.20461GNRA0 LSU rRNAG1054G1055U1056A1057A1058C1060cWWntSH
16 HL_5TBW_0255TBW0.23771GNRA1 LSU rRNAG1126G1127U1128A1129A1130C1132cWWntSH
17 HL_8C3A_0258C3A0.24001GNRA1 LSU rRNAG1122G1123U1124A1125A1126C1128cWWntSH
18 HL_7KKV_0037KKV0.29071GNRABOLE* RNAG528G529A530A531A532C534cWW
19 HL_4V9F_0454V9F0.25061GNRA0 LSU rRNAC1793G1794G1795A1796A1797G1799cWW
20 HL_6AEG_0016AEG0.21630GNRAARNA (95-MER)A32G33A34A35A36U37ncWWntSH
21 HL_7A0S_0267A0S0.21412GNRAX LSU rRNAA966G967C968A970A971U973cWWntSH
22 HL_4WF9_0274WF90.26342GNRAX LSU rRNAU999G1000A1001A1003A1004G1006cWWntSH
23 HL_8VTW_0268VTW0.20862GNRA1A LSU rRNAC955G956A957A959A960G962cWWntSH
24 HL_5FQ5_0015FQ50.18480GNRAASGRNAA32G33A34A35A36U37cWW
25 HL_7UQ6_0027UQ60.15680GNRAB tRNAG41G42A43A44A45C46cWWntSH
26 HL_1U9S_0021U9S0.15520GNRAARIBONUCLEASE PG99G100U101A102A103C104cWWntSH
27 HL_3D0U_0043D0U0.18220GNRAALysine Riboswitch RNAC142G143A144A145A146G147cWWntSH
28 HL_7K16_0017K160.10190GNRAPRNA (51-MER)C13G14A15A16A17G18cWWntSH
29 HL_4ENC_0024ENC0.11710GNRAAFluoride riboswitchU28G29A30A31A32A33cWWntSH
30 HL_5VW1_0015VW10.10020GNRACsgRNAA32G33A34A35A36U37cWW
31 HL_8C3A_0118C3A0.10570GNRA1 LSU rRNAU382G383A384A385A386A387cWWntSH
32 HL_6JOO_0016JOO0.11470GNRABGuide RNAG32G33A34A35A36C37cWWntSH
33 HL_6UFH_0026UFH0.12780GNRAARNA (167-MER)G45G46A47A48A49C50cWWntSH
34 HL_5F9F_0035F9F0.13570GNRAFRNA (24-mer)A10G11U12G13A14U15cWW
35 HL_5B2T_0015B2T0.10630GNRAAGuide RNAA32G33A34A35A36U37cWW
36 HL_2ZZM_0032ZZM0.14380GNRABRNA (84-MER)C47G47|||AU47|||BA47|||CG47|||DG47|||EcWW
37 HL_5J7L_1525J7L0.13910GNRADA LSU rRNAG629G630A631A632A633C634cWW
38 HL_6N2V_0016N2V0.12630GNRAAX. oryzae Mn riboswitch optimized constructG24G25A26A27A28C29cWW
39 HL_4V9F_0604V9F0.15270GNRA0 LSU rRNAC2411G2412A2413A2414A2415G2416cWW
40 HL_7A0S_0207A0S0.18870GNRAX LSU rRNAC640G641A642A643A644G645cWW
41 HL_7A0S_0577A0S0.14860GNRAX LSU rRNAG2353G2354A2355A2356A2357C2358cWW
42 HL_4WF9_0544WF90.17270GNRAX LSU rRNAC2401G2402A2403A2404A2405G2406cWW
43 HL_4OQU_0014OQU0.17840GNRAASAM-I/IV riboswitchG13G14A15G16A17C18ncWW
44 HL_1UN6_0041UN60.14380GNRAF5S RIBOSOMAL RNAG82G83A84A85A86C94cWWntSH
45 HL_3NMU_0023NMU0.12620GNRAERNA (34-MER)C18G19A20A21A22G23cWWntSH
46 HL_6CZR_0916CZR0.14520GNRA1a SSU rRNAC875G876C877A878A879G880cWW
47 HL_4Y1M_0044Y1M0.17380GNRABE. coli yybP-ykoY riboswitchA81G82A83A84A85U86cWWntSH
48 HL_5TBW_0485TBW0.20730GNRA1 LSU rRNAA2220G2221A2222A2223A2224U2225cWW
49 HL_3SUX_0023SUX0.16820GNRAX THF riboswitchC65G66A67A68A69G70cWW
50 HL_8C3A_0488C3A0.18590GNRA1 LSU rRNAA2198G2199A2200A2201A2202U2203cWW
51 HL_8C3A_2158C3A0.17020GNRACM SSU rRNAA1069G1070A1071A1072A1073U1074cWW
52 HL_4V88_2104V880.18330GNRAA6 SSU rRNAA1084G1085A1086A1087A1088U1089cWW
53 HL_5J7L_0195J7L0.18880GNRAAA SSU rRNAC862U863A864A865C866G867cWWntSH
54 HL_4LFB_0194LFB0.17220GNRAA SSU rRNAC862U863A864A865C866G867cWWntSH
55 HL_7MDL_0037MDL0.14380GNRAERNA (90-MER)C47||A|CU47||A|DA47||A|EG47||A|FC47||A|GG47||A|HcWWntSHa
56 HL_4ZT0_0044ZT00.17350GNRADsingle-guide RNAA32G33A34A35A36U37cWWntSH
57 HL_8KAH_0028KAH0.15440GNRAIRNA (65-MER)U72G73A74A75A76A77cWW
58 HL_4LCK_0044LCK0.14130GNRAB tRNAC71G72A73A74A75G76cWWntSH
59 HL_2OIU_0012OIU0.12400GNRAPL1 Ribozyme RNA LigaseC10G11A12A13A14G15cWWntSH
60 HL_4LFB_0274LFB0.14580GNRAA SSU rRNAC1165G1166A1167A1168A1169G1171cWWntSH
61 HL_1KH6_0021KH60.14680GNRAAJIIIabcC28G29A30A31A32G33cWWntSH
62 HL_1U6B_0011U6B0.15530GNRAB197-MERG23G24A25A26A27C28cWWntSH
63 HL_4PLX_0014PLX0.13590GNRAACore ENE hairpin and A-rich tract from MALAT1C24G25A26A27A28G29cWWntSH
64 HL_7WIE_0017WIE0.14980GNRAVRNA (50-MER)C31G32A33A34A35G37cWWntSH
65 HL_5VCI_0015VCI0.13710GNRAARNA (22-mer)C16G17A18A19A20G21cWWntSH
66 HL_4JF2_0014JF20.14200GNRAAPreQ1-II RiboswitchC8G9A10A11A12G13cWWntSH
67 HL_8HZE_0028HZE0.11650GNRABRNA (36-MER)C19G20A21A22A23G24cWWntSH
68 HL_5UZ6_0015UZ60.09000GNRAARNA (25-MER)C15G16A17A18A19G20cWWntSH
69 HL_5D5L_0015D5L0.13180GNRAAPreQ1-II riboswitchC8G9A10A11A12G13cWWntSH
70 HL_2R8S_0012R8S0.13020GNRARP4-P6 RNA RIBOZYME DOMAING149G150A151A152A153C154cWWntSH
71 HL_1HMH_0011HMH0.12380GNRAAHAMMERHEAD RIBOZYME-RNA STRANDC104G21|||LA22|||LA23|||LA24|||LG114cWWntSH
72 HL_5J7L_1795J7L0.18140GNRA relatedDA LSU rRNAC1806G1807A1808A1809A1810G1811cWWntSH
73 HL_4BW0_0014BW00.19220GNRAAHMKT-7C9G10A11A12A13G14cWWntSH
74 HL_4FRG_0024FRG0.16180GNRABcobalamin riboswitch aptamer domainC46G47A48A49A50G51cWWntSH
75 HL_6JQ5_0046JQ50.16750GNRABRNA (82-MER)C45G46A47A48A49G50cWWntSH
76 HL_7QQP_0037QQP0.17470GNRAAAAVS1 sgRNAU72G73A74A75A76A77cWWntSH
77 HL_1NBS_0071NBS0.19670GNRAB RNase P class BA204G205A206A207A208U209cWWntSH
78 HL_3CUL_0013CUL0.17350GNRACRNA (92-MER)C7G8A9A10A11G12cWWntSH
79 HL_5DCV_0025DCV0.15180GNRADRNA (47-MER)G26G27A28A29A30C31cWWntSH
80 HL_5XTM_0025XTM0.16010GNRADRNA (47-MER)G24G25A26A27A28C29cWWntSH
81 HL_5XTM_0015XTM0.15520GNRABRNA (47-MER)G24G25A26A27A28C29cWWntSH
82 HL_7UZ0_0027UZ00.14630GNRAA tRNAC36G37A38A39A40G41cWWntSH
83 HL_5Y7M_0025Y7M0.13930GNRADRNA (52-MER)C24G25A26A27A28G29cWWntSH
84 HL_4K50_0014K500.10320GNRABRNA (33-MER)U587G588A589A590A591G592cWWntSH
85 HL_1KXK_0011KXK0.13900GNRAAai5g group II Self-splicing intronU33G34A35A36A37G38cWWntSH
86 HL_4K27_0014K270.15470GNRAUMyotonic Dystrophy Type 2 RNAU26G27A28A29A30G31cWWntSH
87 HL_5BTM_0015BTM0.17720GNRAARNA (55-mer)U26G27A28A29A30G31cWWntSH
88 HL_4PCJ_0014PCJ0.17440GNRAAtrCUG-3('5)U16G17A18A19A20G21cWWntSH
89 HL_6WPI_0016WPI0.18720GNRABRNA (47-MER)U25G26A27A28A29G30cWWntSH
90 HL_5M0H_0015M0H0.18340GNRAAASH1 E3 (42 nt-TL/TLR)U21G22A23A24A25G26cWWntSH
91 HL_3V7E_0033V7E0.18690GNRAC SAM-I riboswitchG105G106A107A108A109C110cWWntSH
92 HL_3IGI_0063IGI0.12200GNRAAGroup IIC intronG274G275A276A277A278C279cWWntSH
93 HL_5FJC_0035FJC0.09870GNRAA SAM-I riboswitchG73G74A75A76A77C78cWWntSH
94 HL_5TPY_0065TPY0.08270GNRAARNA (71-MER)C62G63A64A65A66G67cWWntSH
95 HL_4AOB_0034AOB0.09580GNRAA SAM-I riboswitchG73G74A75A76A77C78cWWntSH
96 HL_3MXH_0013MXH0.08830GNRARc-di-GMP riboswitchC31G32A33A34A35G36cWWntSH
97 HL_6DVK_0016DVK0.11370GNRAHRNA (95-MER)G45G46A47A48A49C50cWWntSH
98 HL_1GID_0041GID0.11010GNRABP4-P6 RNA RIBOZYME DOMAING149G150A151A152A153C154cWWntSH
99 HL_1G1X_0011G1X0.09760GNRAD16S RIBOSOMAL RNAC590G591A592A593A594G649cWWntSH
100 HL_4R4V_0044R4V0.10410GNRAAVS ribozyme RNAC735G736U737A738A739G740cWWntSH
101 HL_5TBW_0135TBW0.09030GNRA1 LSU rRNAC599G600U601A602A603G604cWWntSH
102 HL_6N2V_0026N2V0.08380GNRAAX. oryzae Mn riboswitch optimized constructC56G57A58A59A60G61cWWntSH
103 HL_1RLG_0021RLG0.10650GNRAD25-MERC9G10A11A12A13G14cWWntSH
104 HL_4V9F_0544V9F0.09990GNRA0 LSU rRNAC2248G2249G2250G2251A2252G2253cWWntSH
105 HL_7D7W_0017D7W0.00000GNRAA18GAAA (52-MER)C27G28A29A30A31G32cWWntSH
106 HL_7OZQ_0047OZQ0.06580GNRAHRNAC14G15A16A17A18G19cWWntSH
107 HL_8X5V_0018X5V0.08850GNRABRNA (110-mer)U33G34A35A36A37A38cWWntSH
108 HL_4OQU_0034OQU0.07950GNRAASAM-I/IV riboswitchG57G58A59G60A61C62cWWntSH
109 HL_5FJC_0025FJC0.09030GNRAA SAM-I riboswitchA49G50A51A52A53U54cWWntSH
110 HL_8C3A_0668C3A0.14040GNRA1 LSU rRNAC2997G2998A2999G3000A3001G3002cWWtSH
111 HL_4V9F_0664V9F0.13260GNRA0 LSU rRNAC2695G2696A2697G2698A2699G2700cWWntSH
112 HL_7A0S_0637A0S0.14330GNRAX LSU rRNAC2637G2638A2639G2640A2641G2642cWWtSH
113 HL_7R97_0017R970.14150GNRACRNA (28-MER)C11G12C13A14A15G16cWWtSH
114 HL_5TBW_0175TBW0.14280GNRA1 LSU rRNAC732G733C734A735A736G737cWWntSH
115 HL_4Y1M_0034Y1M0.12870GNRABE. coli yybP-ykoY riboswitchU55G56A57A58A59A60cWWntSH
116 HL_4V9F_0094V9F0.11700GNRA0 LSU rRNAC252U253C254A255C256G257cWWntSH
117 HL_5X2G_0015X2G0.12290GNRABsgRNAU32G33A34A35A36A37cWWntSH
118 HL_5B2P_0015B2P0.13670GNRABGuide RNAC35G36A37A38A39G40cWWtSH
119 HL_6TFF_0016TFF0.10530GNRAAnadA RNAC27G28A29A30A31G32cWWntSH
120 HL_8ITS_0028ITS0.08920GNRAARNA (46-MER)C31G32A33A34A35G36cWWntSH
121 HL_8JOZ_0038JOZ0.08620GNRAB tRNAC47|||BG47|||CA47|||DA47|||EA47|||FG47|||GcWWntSH
122 HL_5TBW_0115TBW0.09860GNRA1 LSU rRNAU382G383A384A385A386A387cWWntSH
123 HL_6AEG_0036AEG0.11420GNRAARNA (95-MER)U72G73A74A75A76A77cWWntSH
124 HL_8VTW_0638VTW0.11570GNRA1A LSU rRNAC2658G2659A2660G2661A2662G2663cWWntSH
125 HL_5J7L_1975J7L0.11700GNRADA LSU rRNAC2658G2659A2660G2661A2662G2663cWWntSH
126 HL_8ITS_0018ITS0.11060GNRAARNA (46-MER)C15G16A17A18A19G20cWWntSH
127 HL_5B2T_0035B2T0.14020GNRAAGuide RNAU72G73A74A75A76A77cWWntSH
128 HL_3MOJ_0013MOJ0.12240GNRAA LSU rRNAG2529G2530A2531A2532A2533C2534cWWntSH
129 HL_8D28_0028D280.11990GNRABRNA (33-MER)C13G14A15A16A17G18cWWntSH
130 HL_3RW6_0013RW60.12390GNRAHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAG27G28A29A30A31C32cWWtSH
131 HL_4RUM_0024RUM0.11320GNRAANiCo riboswitch RNAC51G52A53A54A55G56cWWntSH
132 HL_1MZP_0011MZP0.13910GNRABfragment of 23S rRNAC25G26C27A28A29G30cWWntSH
133 HL_7ZO1_0037ZO10.12960GNRAACD34 sgRNAU72G73A74A75A76A77cWWntSH
134 HL_3NDB_0023NDB0.13680GNRAM SRP RNAC208G209G210A211A212G213cWWtSH
135 HL_8VTW_0458VTW0.13070GNRA1A LSU rRNAC1806G1807U1808A1809A1810G1811cWWntSH
136 HL_4V9F_0204V9F0.12570GNRA0 LSU rRNAG690G691A692A693A694C695cWWntSH
137 HL_5J7L_0045J7L0.14840GNRAAA SSU rRNAC186G187C188A189A190G191cWWntSH
138 HL_8G9Z_0038G9Z0.14130GNRA relatedESelenocysteine transfer RNAC47||A|CU47||A|DA47||A|EG47||A|FC47||A|GG47||A|HcWWntSH
139 HL_3PDR_0013PDR0.15710GNRAXM-box riboswitch (ykoK leader)C68C69A70A71A72G73cWWntSH
140 HL_1L9A_0021L9A0.12420GNRABsignal recognition particle RNA S domainG197G198A199A200A201C202cWWntSH
141 HL_3OXE_0023OXE0.16450GNRA relatedAdomain II of glycine riboswitchG49G50A51A52A53C54cWWntSH
142 HL_7QQX_0037QQX0.15790GNRAAFANCF sgRNAU72G73A74A75A76A77cWWntSH
143 HL_3KTW_0023KTW0.15440GNRAC SRP RNAC209G210G211A212A213G214cWWntSH
144 HL_5F9R_0035F9R0.16800GNRAARNA (116-MER)U90G91A92A93A94A95cWWntSH
145 HL_3P22_0013P220.21960GNRAACore ENE hairpin from KSHV PAN RNAC17G18A19A20A21G22cWWntSH
146 HL_5J7L_1485J7L0.25081GNRADA LSU rRNAC487G488G489G491A492G493cWWtSH
147 HL_4W90_0034W900.19090GNRAC cyclic di-AMP riboswitchC82G83A84A85A86G87cWWntSH
148 HL_8VTW_0158VTW0.18660GNRA1A LSU rRNAC487G488G489G491A492G493cWWtSH
149 HL_4WF9_0164WF90.20560GNRAX LSU rRNAC533G534G535A536A537G538cWWntSH
150 HL_7A0S_0167A0S0.20740GNRAX LSU rRNAC498G499G500G501A502G503cWWntSH
151 HL_5DDO_0015DDO0.19210GNRAAL-glutamine riboswitch (58-MER)G11G12A13A14A15C16cWW
152 HL_4AOB_0024AOB0.13380GNRAA SAM-I riboswitchA49A50A51A52A53U54cWWtSH
153 HL_359D_001359D0.13280GNRABRNA HAMMERHEAD RIBOZYMEC154G31|||LU32|||LA33|||LA34|||LG164cWW
154 HL_3IWN_0013IWN0.10690GNRAAC-di-GMP riboswitchC21G22A23A24A25G26cWWntSH
155 HL_2IL9_0032IL90.12750GNRAARibosomal Binding Domain of the IRES RNAC6119G6119|||AA6119|||BA6119|||CA6119|||DG6119|||EncWWtSH
156 HL_1MFQ_0021MFQ0.14800GNRAA SRP RNAG197G198A199A200A201C202cWWtSH
157 HL_6JDV_0026JDV0.16920GNRABsgRNAU86G87A88A89A90A91cWWtSH
158 HL_4V9F_0404V9F0.17950GNRA0 LSU rRNAG1628G1629A1630A1631A1632C1633cWWntSH
159 HL_4LFB_0034LFB0.19320GNRAA SSU rRNAG158G159A160A161A162C163cWWntSH
160 HL_8C3A_0198C3A0.16320GNRA1 LSU rRNAG840G841A842A843A844C845cWWntSH
161 HL_5TBW_0195TBW0.11060GNRA1 LSU rRNAG844G845A846A847A848C849cWWntSH
162 HL_5TBW_0655TBW0.12770GNRA1 LSU rRNAC3025G3026A3027G3028A3029G3030cWWntSH
163 HL_5J7L_0035J7L0.14750GNRAAA SSU rRNAG158G159A160A161A162C163cWWntSH
164 HL_7ENI_0017ENI0.13690GNRABsgRNA (74-MER)G34G35A36A37A38C39cWWntSH
165 HL_4V9F_0234V9F0.09320GNRA0 LSU rRNAC804G805A806A807A808G809cWWntSH
166 HL_1Q96_0011Q960.09450GNRAAsarcin/ricin 28S rRNAU13G14A15G16A17A18cWWntSH
167 HL_7ELQ_0017ELQ0.11410GNRAANMT1 RNAC22G23A24A25A26G27cWWntSH
168 HL_5M0J_0015M0J0.16580GNRAEASH1 E3 (28 nt-loop)C12G13A14A15A16G17cWWntSH
169 HL_5M0J_0025M0J0.13020GNRAFASH1 E3 (28 nt-loop)C12G13A14A15A16G17cWWntSH
170 HL_5M0I_0015M0I0.12950GNRAEASH1-E3 element, RNA (28-MER)C12G13A14A15A16G17cWWntSH
171 HL_3LQX_0013LQX0.10070GNRABSRP RNAC153G154A155A156A157G158cWWtSH
172 HL_5M0I_0025M0I0.10240GNRAFASH1-E3 element, RNA (28-MER)C12G13A14A15A16G17cWWntSH
173 HL_1HMH_0031HMH0.08740GNRAEHAMMERHEAD RIBOZYME-RNA STRANDC104G21|||LA22|||LA23|||LA24|||LG114cWWntSH
174 HL_6N2V_0036N2V0.10840GNRAAX. oryzae Mn riboswitch optimized constructC76G77A78A79A80G81cWWntSH
175 HL_4Y1M_0024Y1M0.10430GNRABE. coli yybP-ykoY riboswitchC24G25A26A27A28G29cWWntSH
176 HL_8C3A_2168C3A0.12200GNRACM SSU rRNAC1106G1107C1108A1109A1110G1111cWWntSH
177 HL_4V88_2114V880.13860GNRAA6 SSU rRNAC1121G1122C1123A1124A1125G1126cWWntSH
178 HL_5J7L_0205J7L0.17400GNRAAA SSU rRNAC897G898C899A900A901G902cWWntSH
179 HL_4LFB_0204LFB0.15240GNRAA SSU rRNAC897G898C899A900A901G902cWWntSH
180 HL_4V9F_0484V9F0.17520GNRA0 LSU rRNAC1862G1863C1864A1865A1866G1867cWWntSH
181 HL_8HZL_0028HZL0.12250GNRABRNA (84-MER)C49G50A51A52A53G54cWWntSH
182 HL_3NVI_0023NVI0.13510GNRAFRNA (24-mer)C9G10A11A12A13G14cWWntSH
183 HL_4NLF_0014NLF0.13970GNRAA23S ribosomal RNA Sarcin Ricin LoopC2658G2659A2660G2661A2662G2663cWWntSH
184 HL_4V9F_0724V9F0.15890GNRA9 5S rRNAC89G90C91G92A93G94cWWntSH
185 HL_5TBW_1865TBW0.12330GNRAAS 5S rRNAG88G89U90G91A92C93cWWntSH
186 HL_4LFB_0104LFB0.12310GNRAA SSU rRNAC379G380C381A382A383G384cWWntSH
187 HL_5J7L_0105J7L0.10360GNRAAA SSU rRNAC379G380C381A382A383G384cWWntSH
188 HL_8C3A_0748C3A0.11600GNRA3 5S rRNAG88G89A90G91A92C93cWWntSH
189 HL_7U4A_0037U4A0.12890GNRAARNA (70-MER)C62G63A64A65A66G67cWWntSH
190 HL_3E5C_0013E5C0.13140GNRAASMK box (SAM-III) RiboswitchG18G19A20A21A22C23cWWtSH
191 HL_3AM1_0033AM10.14160GNRABASL-truncated tRNAC45G46A47G48A49G50cWWntSH
192 HL_5TPY_0045TPY0.09380GNRAARNA (71-MER)C13G14A15A16A17G18cWWntSH
193 HL_5DDP_0015DDP0.08570GNRAA glnAG11G12A13A14A15C16cWWntSH
194 HL_8VTW_0578VTW0.10770GNRA1A LSU rRNAC2374G2375A2376A2377A2378G2379cWWntSH
195 HL_7ZO1_0017ZO10.12760GNRAACD34 sgRNAA32G33A34A35A36U37cWW
196 HL_6CZR_0816CZR0.17320GNRA1a SSU rRNAC375G376C377A378A379G380cWW
197 HL_7QQP_0017QQP0.15290GNRAAAAVS1 sgRNAA32G33A34A35A36U37cWWntSH
198 HL_7QR0_0017QR00.13410GNRAATRAC sgRNAA32G33A34A35A36U37cWWntSH
199 HL_7QR0_0037QR00.18640GNRAATRAC sgRNAU72G73A74A75A76A77cWWntSH
200 HL_5FQ5_0035FQ50.23400GNRAASGRNAU72G73A74A75A76A77ncWWntSH
201 HL_4WF9_0604WF90.17640GNRAX LSU rRNAC2685G2686A2687G2688A2689G2690cWWntSH
202 HL_6UFH_0056UFH0.21380GNRAARNA (167-MER)C145G146A147A148A149G150cWWntSH
203 HL_7A0S_0477A0S0.19810GNRAX LSU rRNAU1856G1857C1858A1859A1860G1861cWW
204 HL_8VTW_0468VTW0.20450GNRA1A LSU rRNAU1864G1865C1866A1876A1877G1878cWW
205 HL_5TBW_0165TBW0.19480GNRA1 LSU rRNAU707G708A709A710A711G712cWW
206 HL_8C3A_0168C3A0.18140GNRA1 LSU rRNAU705G706A707A708A709G710cWW
207 HL_8C3A_0608C3A0.17840GNRA1 LSU rRNAU2716G2717A2718A2719A2720G2721cWW
208 HL_5TBW_0595TBW0.20000GNRA1 LSU rRNAU2744G2745A2746A2747A2748G2749cWW
209 HL_6CB3_0066CB30.21540GNRABRNA (99-MER)C76G77A78A79A80G81cWW
210 HL_7JNH_0017JNH0.21770GNRABCore double ENE RNA (Xtal construct) from Oryza sativa transposonC43G44A45A46A47G48cWW
211 HL_7MRL_0027MRL0.20490GNRAA tRNAG34G35A36A37A38C39cWW
212 HL_4WF9_0654WF90.24210GNRAX LSU rRNAG2876G2877U2878G2879A2880C2881cWW
213 HL_4LVW_0024LVW0.23810GNRAATHF riboswitchC58G59A60G61A62G63cWW
214 HL_8VTW_0708VTW0.21710GNRA1B 5S rRNAG86G87C88G89A90C91cWW
215 HL_7A0S_0707A0S0.20950GNRAY 5S rRNAC88G89C90A91G92G93cWW
216 HL_5J7L_1915J7L0.14700GNRADA LSU rRNAC2374G2375A2376A2377A2378G2379cWW
217 HL_3NKB_0023NKB0.20590GNRABThe hepatitis delta virus ribozymeC49G50A51A52A53G54cWW
218 HL_3E5C_0023E5C0.20350GNRAASMK box (SAM-III) RiboswitchC41G42A43A44A45G46cWW
219 HL_4PQV_0014PQV0.24020GNRAAFlavivirus 3' UTR stem loop IVC13G14A15A16A17G18cWW
220 HL_3NPQ_0013NPQ0.20890GNRAAS-ADENOSYLHOMOCYSTEINE RIBOSWITCHC20G21A22G23A24G25cWW
221 HL_4QK9_0024QK90.17690GNRAAC-di-AMP riboswitchC56G57U58A59A60G61cWW
222 HL_2OIU_0032OIU0.17150GNRAPL1 Ribozyme RNA LigaseC59G60A61A62A63G64cWW
223 HL_7MKY_0027MKY0.13690GNRAARNA (66-MER)G40G41A42A43A44C45cWW
224 HL_6JQ5_0026JQ50.15140GNRAARNA (82-MER)C45G46A47A48A49G50cWW
225 HL_6U8D_0026U8D0.12780GNRAAJIIIabc RNA (68-MER)G180G198A199A200A201C219cWW
226 HL_6CB3_0056CB30.18940GNRABRNA (99-MER)G50G51A52A53A54C55cWW
227 HL_6CU1_0026CU10.19390GNRAAY RNA-likeC42G43A44A45A46G47cWW
228 HL_8VU0_0028VU00.19990GNRAC tRNAC33G34A35A36A37G38cWW
229 HL_6UFG_0046UFG0.15850GNRAARNA (166-MER)C105G106A107A108A109G110cWWntSH
230 HL_1U9S_0041U9S0.13300GNRAARIBONUCLEASE PG204G205C206A207A208C209cWWntSH
231 HL_8VTW_0198VTW0.15750GNRA1A LSU rRNAG629G630A631A632A633C634cWW
232 HL_5J7L_2025J7L0.17060GNRADA LSU rRNAA2856G2857C2858G2859A2860U2861cWW
233 HL_7A0S_0687A0S0.18670GNRAX LSU rRNAA2831G2832C2833A2834A2835U2836cWWntSH
234 HL_4LFB_0284LFB0.19320GNRAA SSU rRNAG1265G1266C1267A1268A1269C1270cWW
235 HL_4WF9_0204WF90.19400GNRAX LSU rRNAC674G675A676A677A678G679cWW
236 HL_6DME_0016DME0.17500GNRAAppGpp RiboswitchC25G26A27G28A29G30cWW
237 HL_8VTW_0688VTW0.20350GNRA1A LSU rRNAC2856G2857C2858G2859A2860G2861cWW
238 HL_5TBW_0645TBW0.18300GNRA1 LSU rRNAC2963G2964U2965G2966A2967G2968cWW
239 HL_4V9F_0654V9F0.20700GNRA0 LSU rRNAC2629G2630U2631G2632A2633G2634cWW
240 HL_5J7L_1965J7L0.19220GNRADA LSU rRNAC2594G2595U2596G2597A2598G2599cWW
241 HL_7KKV_0017KKV0.22350GNRABOLE* RNAG500G501U502G503A504C505cWW
242 HL_8C3A_2198C3A0.21910GNRACM SSU rRNAA1281G1282U1283G1284A1285U1286cWW
243 HL_4V88_2144V880.24440GNRAA6 SSU rRNAA1296G1297U1298G1299A1300U1301cWW
244 HL_4LFB_0244LFB0.25070GNRAA SSU rRNAC1076G1077U1078G1079A1080G1081cWW
245 HL_5J7L_0235J7L0.25010GNRAAA SSU rRNAU1076G1077U1078G1079A1080A1081cWW
246 HL_5J7L_0275J7L0.26270GNRAAA SSU rRNAC1265G1266C1267G1268A1269G1270cWW
247 HL_3IGI_0033IGI0.20060GNRAAGroup IIC intronG89G90C91G92A93C94cWW
248 HL_2Z75_0042Z750.22880GNRAB glmS ribozymeG113G114C115G116A117C118cWW
249 HL_8C3A_0108C3A0.21720GNRA1 LSU rRNAA357G358U359G360A361U362cWW
250 HL_5TBW_0105TBW0.20550GNRA1 LSU rRNAA357G358U359G360A361U362cWW
251 HL_4V9F_0154V9F0.20400GNRA0 LSU rRNAU468G469U470G471A472A473cWW
252 HL_4WF9_0154WF90.19220GNRAX LSU rRNAC508G509U510G511A512G513cWW
253 HL_8VTW_0148VTW0.17890GNRA1A LSU rRNAC462G463U464G465A466G467cWW
254 HL_5J7L_1475J7L0.18750GNRADA LSU rRNAC462G463U464G465A466G467cWW
255 HL_3G9C_0083G9C0.17930GNRAQGLMS RIBOZYMEG108G109U110G111A112C113cWW
256 HL_7A0S_0157A0S0.19480GNRAX LSU rRNAC473G474U475G476A477G478cWW
257 HL_8C3A_0658C3A0.17890GNRA1 LSU rRNAC2935G2936U2937G2938A2939G2940cWW
258 HL_8VTW_0318VTW0.22910GNRA1A LSU rRNAC1222G1223C1224G1225A1226G1227cWW
259 HL_4YAZ_0034YAZ0.22510GNRARCyclic di-GMP-I riboswitchC25G26C27G28A29G30cWW
260 HL_4V9F_0174V9F0.23510GNRA0 LSU rRNAC576G577C578G579A580G581cWW
261 HL_4WFL_0034WFL0.19660GNRAA LSRP RNAG81G82U83A84A85C86cWW
262 HL_3W3S_0033W3S0.23440GNRABSelenocysteine transfer RNAC47|||FG47|||GC47|||HA47|||IA47|||JG47|||KcWW
263 HL_5U3G_0025U3G0.18160GNRABGuanidine-I riboswitchC47G48A49A50A51G52cWWntSH
264 HL_7A0S_0627A0S0.21660GNRAX LSU rRNAC2573G2574U2575G2576A2577G2578cWW
265 HL_8VTW_0628VTW0.21170GNRA1A LSU rRNAC2594G2595U2596G2597A2598G2599cWW
266 HL_4WF9_0594WF90.26660GNRAX LSU rRNAC2621G2622U2623G2624A2625G2626cWW
267 HL_8C3A_0308C3A0.28370GNRA1 LSU rRNAU1399G1400U1401A1402A1403A1404cWW
268 HL_8C3A_0368C3A0.30840GNRA1 LSU rRNAG1630G1631C1632A1633A1634C1635cWW
269 HL_5TBW_0305TBW0.28480GNRA1 LSU rRNAC1403G1404U1405A1406A1407G1408cWW
270 HL_5TBW_0365TBW0.30080GNRA1 LSU rRNAG1634G1635U1636A1637A1638C1639cWW
271 HL_2BTE_0032BTE0.29890GNRAB tRNAC46G47C47|||AA47|||BA47|||CG47|||DcWW
272 HL_4V9F_0334V9F0.30330GNRA0 LSU rRNAC1326G1327A1328G1329A1330G1331cWW
273 HL_6CZR_0956CZR0.24080GNRA1a SSU rRNAC1059G1060U1061G1062A1063G1064cWW
274 HL_6UFH_0046UFH0.25030GNRAARNA (167-MER)C106G107A108A109A110G111cWW
275 HL_6YMC_0016YMC0.22550GNRAARNA (26-MER)G11G12A13A14A15C16cWWntSH
276 HL_4V88_2184V880.23100GNRAA6 SSU rRNAC1501G1502A1503G1504A1505G1506cWWntSH
277 HL_8C3A_2238C3A0.20160GNRACM SSU rRNAC1488G1489A1490G1491A1492G1493cWWntSH
278 HL_6AZ4_0016AZ40.21310GNRAARNA (32-MER)U20G21A22A23A24G25cWWntSH
279 HL_6CB3_0046CB30.17570GNRABRNA (99-MER)G20G21A22A23A24C25cWWntSH
280 HL_4V9F_0704V9F0.17880GNRA0 LSU rRNAG2876G2877U2878A2879A2880C2881cWWntSH
281 HL_7QQX_0017QQX0.24280GNRAAFANCF sgRNAA32G33A34A35A36U37cWW
282 HL_4QK9_0014QK90.26670GNRA variationAC-di-AMP riboswitchC14U15G16A17A18G19cWW
283 HL_7QR8_0017QR80.25560GNRA variationAPTPRC sgRNAA32G33A34A35A36U37cWW
284 HL_5J7L_1805J7L0.58310GNRA variationDA LSU rRNAC1868G1869C1870A1871A1872G1873cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAAG77
GGAAAC41
AGAAAU17
UGAAAA16
CGCAAG16
CGAGAG15
UGAAAG13
CGUGAG13
CGUAAG6
CGCGAG6
AGUGAU5
GGUAAC4
GGUGAC4
UGAGAG3
GGUAAGC3
GGAGAC3
CGGGAG3
CGGAAG3
GGCGAC3
GGCAAC3
AGAAAGU2
CUAACG2
CUAGCG2
UGCAAG2
UGUGAA2
UGCAUA1
UUUCAAG1
CGAAAUG1
UUAGCG1
GGAAAUC1
CGGAACG1
AGCUAACU1
UGAUAAGG1
CGAUAACG1
CGUAGG1
CUCACG1
CCAAAG1
CGGCGAG1
AAAAAU1
UGAGAA1
CGCAGG1
AGCGAU1
AGCAAU1
UGUAAA1
CUGAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA164
GUGA24
GAGA22
GCAA22
GUAA11
GCGA10
UAGC3
GUAAG3
GGGA3
GGAA3
GAAAU2
GAAAG2
UAAC2
GCAU1
UUCAA1
GGAAC1
GCUAAC1
GAUAAG1
GAUAAC1
GUAG1
UCAC1
CAAA1
GGCGA1
AAAA1
GCAG1
UGAA1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • GNRA (277)
  • GNRA variation (4)
  • GNRA related (3)
  • Basepair signature
    cWW-F-F-F-F
    Heat map statistics
    Min 0.04 | Avg 0.22 | Max 0.78
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