6YTF Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_6YTF_001 | 1/3/960:969 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
HL_6YTF_002 | 1/3/1009:1014 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
HL_6YTF_003 | 1/3/1073:1078 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
HL_6YTF_004 | 1/3/1086:1093 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
HL_6YTF_005 | 1/3/1131:1137 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
HL_6YTF_006 | 1/3/1162:1168 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
HL_6YTF_007 | 1/3/1262:1267 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
HL_6YTF_008 | 1/3/1311:1320 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
HL_6YTF_009 | 1/3/1353:1363 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
HL_6YTF_010 | 1/7/31:39 | tRNA anticodon loop | homologous HL_3TUP_002 HL_06059.6 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_6YTF_011 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_6YTF_001 | 1/3/930:932, 1/3/1377:1381 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
IL_6YTF_002 | 1/3/950:951, 1/3/1223:1225 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
IL_6YTF_003 | 1/3/990:994, 1/3/1041:1042 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
IL_6YTF_021 | 1/3/995:996, 1/3/1038:1040 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
IL_6YTF_006 | 1/3/1003:1006, 1/3/1017:1020 | Tandem non-canonical cWW pairs | geometric IL_280D_001 IL_77658.1 | |
IL_6YTF_007 | 1/3/1045:1047, 1/3/1205:1206 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
IL_6YTF_020 | 1/3/1049:1053, 1/3/1201:1203 | No text annotation | homologous IL_6CZR_154 NA | |
IL_6YTF_009 | 1/3/1054:1055, 1/3/1196:1200 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
IL_6YTF_010 | 1/3/1057:1058, 1/3/1192:1194 | Single bulged A | geometric IL_5J7L_049 IL_31462.6 | |
IL_6YTF_011 | 1/3/1058:1060, 1/3/1190:1192 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 IL_28037.2 | |
IL_6YTF_012 | 1/3/1120:1125, 1/3/1141:1147 | No text annotation | ||
IL_6YTF_013 | 1/3/1126:1129, 1/3/1139:1140 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
IL_6YTF_014 | 1/3/1155:1158, 1/3/1172:1178 | No text annotation | homologous IL_4LFB_050 IL_42032.1 | |
IL_6YTF_015 | 1/3/1244:1250, 1/3/1281:1287 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
IL_6YTF_016 | 1/3/1252:1255, 1/3/1274:1279 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
IL_6YTF_017 | 1/3/1256:1259, 1/3/1270:1273 | Tandem non-canonical cWW pairs | geometric IL_4V88_461 NA | |
IL_6YTF_018 | 1/3/1300:1305, 1/3/1326:1331 | No text annotation | homologous IL_5J7L_057 IL_85536.2 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_6YTF_004 | No text annotation | ||
IL_6YTF_005 | No text annotation | ||
IL_6YTF_008 | Tandem non-canonical cWW pairs | ||
IL_6YTF_019 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_6YTF_001 | 1/3/933:936, 1/3/1341:1347, 1/3/1369:1376 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
J3_6YTF_002 | 1/3/940:943, 1/3/1232:1234, 1/3/1334:1337 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
J3_6YTF_003 | 1/3/952:959, 1/3/970:981, 1/3/1218:1222 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
J3_6YTF_004 | 1/3/987:990, 1/3/1042:1044, 1/3/1207:1212 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
J3_6YTF_009 | 1/3/987:994, 1/3/1041:1044, 1/3/1207:1212 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
J3_6YTF_005 | 1/3/1060:1065, 1/3/1104:1110, 1/3/1184:1190 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
J3_6YTF_006 | 1/3/1070:1071, 1/3/1080:1083, 1/3/1096:1099 | No text annotation | geometric J3_4LFB_017 J3_79369.1 | |
J3_6YTF_007 | 1/3/1113:1115, 1/3/1152:1155, 1/3/1178:1181 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
J3_6YTF_011 | 1/3/1113:1115, 1/3/1152:1158, 1/3/1172:1181 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
J3_6YTF_008 | 1/3/1234:1238, 1/3/1293:1300, 1/3/1331:1334 | No text annotation | homologous J3_4LFB_009 J3_37047.6 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_6YTF_010 | No text annotation |
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