6YTF Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6YTF_001 | 1/3/960:969 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_6YTF_002 | 1/3/1009:1014 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6YTF_003 | 1/3/1073:1078 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_6YTF_004 | 1/3/1086:1093 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_6YTF_005 | 1/3/1131:1137 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
| HL_6YTF_006 | 1/3/1162:1168 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_6YTF_007 | 1/3/1262:1267 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_6YTF_008 | 1/3/1311:1320 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6YTF_009 | 1/3/1353:1363 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_6YTF_010 | 1/7/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_3TUP_002 HL_53597.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6YTF_001 | 1/3/930:932, 1/3/1377:1381 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_6YTF_002 | 1/3/950:951, 1/3/1223:1225 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_6YTF_003 | 1/3/990:994, 1/3/1041:1042 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_6YTF_004 | 1/3/994:996, 1/3/1038:1041 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_6YTF_005 | 1/3/998:1003, 1/3/1020:1036 | No text annotation Not in a motif group | ||
| IL_6YTF_006 | 1/3/1003:1006, 1/3/1017:1020 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_280D_001 IL_30621.2 | |
| IL_6YTF_007 | 1/3/1045:1047, 1/3/1205:1206 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_6YTF_008 | 1/3/1048:1053, 1/3/1201:1204 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_6YTF_009 | 1/3/1054:1055, 1/3/1196:1200 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_6YTF_010 | 1/3/1057:1058, 1/3/1192:1194 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_6YTF_011 | 1/3/1058:1060, 1/3/1190:1192 | No text annotation Not in a motif group | homologous IL_5J7L_050 IL_95997.1 | |
| IL_6YTF_012 | 1/3/1120:1125, 1/3/1141:1147 | No text annotation Not in a motif group | ||
| IL_6YTF_013 | 1/3/1126:1129, 1/3/1139:1140 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_6YTF_014 | 1/3/1155:1158, 1/3/1172:1178 | No text annotation Not in a motif group | homologous IL_4LFB_050 IL_42032.1 | |
| IL_6YTF_015 | 1/3/1244:1250, 1/3/1281:1287 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_6YTF_016 | 1/3/1252:1255, 1/3/1274:1279 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_6YTF_017 | 1/3/1256:1259, 1/3/1270:1273 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_461 IL_30621.2 | |
| IL_6YTF_018 | 1/3/1300:1305, 1/3/1326:1331 | No text annotation Not in a motif group | homologous IL_5J7L_057 IL_19954.2 | |
| IL_6YTF_019 | 1/7/26:27, 1/7/43:44 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6YTF_001 | 1/3/933:936, 1/3/1341:1347, 1/3/1369:1376 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_6YTF_002 | 1/3/940:943, 1/3/1232:1234, 1/3/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_6YTF_003 | 1/3/952:959, 1/3/970:981, 1/3/1218:1222 | No text annotation Not in a motif group | ||
| J3_6YTF_004 | 1/3/987:990, 1/3/1042:1044, 1/3/1207:1212 | No text annotation Not in a motif group | ||
| J3_6YTF_005 | 1/3/1060:1065, 1/3/1104:1110, 1/3/1184:1190 | No text annotation Not in a motif group | ||
| J3_6YTF_006 | 1/3/1070:1071, 1/3/1080:1083, 1/3/1096:1099 | No text annotation Not in a motif group | ||
| J3_6YTF_007 | 1/3/1113:1115, 1/3/1152:1155, 1/3/1178:1181 | No text annotation Not in a motif group | ||
| J3_6YTF_008 | 1/3/1234:1238, 1/3/1293:1300, 1/3/1331:1334 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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