5TZS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5TZS_001 | 1/1/70:81 | No text annotation | homologous HL_4V88_187 NA | |
| HL_5TZS_002 | 1/1/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_5TZS_003 | 1/1/243:250 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_5TZS_004 | 1/1/276:279 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_5TZS_005 | 1/1/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_5TZS_007 | 1/1/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_5TZS_008 | 1/1/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_5TZS_009 | 1/1/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_5TZS_010 | 1/1/520:532 | No text annotation | homologous HL_4V88_199 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5TZS_006 | No text annotation | ||
| HL_5TZS_011 | No text annotation | ||
| HL_5TZS_012 | No text annotation | ||
| HL_5TZS_013 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5TZS_001 | 1/1/50:52, 1/1/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_5TZS_002 | 1/1/58:63, 1/1/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_5TZS_003 | 1/1/64:69, 1/1/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_5TZS_004 | 1/1/109:112, 1/1/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_5TZS_005 | 1/1/113:116, 1/1/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_5TZS_006 | 1/1/117:122, 1/1/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_5TZS_007 | 1/1/143:149, 1/1/165:172 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_5TZS_008 | 1/1/150:152, 1/1/162:164 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
| IL_5TZS_009 | 1/1/204:206, 1/1/259:263 | Major groove platform with extra cWW | geometric IL_4V88_397 NA | |
| IL_5TZS_010 | 1/1/206:208, 1/1/257:259 | Isolated non-canonical cWW pair | homologous IL_4V88_398 NA | |
| IL_5TZS_012 | 1/1/265:267, 1/1/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_5TZS_013 | 1/1/270:273, 1/1/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_5TZS_014 | 1/1/275:276, 1/1/279:281 | Single bulged U | homologous IL_4V88_401 NA | |
| IL_5TZS_015 | 1/1/311:316, 1/1/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_5TZS_016 | 1/1/318:323, 1/1/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_5TZS_017 | 1/1/389:391, 1/1/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_5TZS_018 | 1/1/411:413, 1/1/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_5TZS_019 | 1/1/439:441, 1/1/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_5TZS_033 | 1/1/443:447, 1/1/460:461 | No text annotation | homologous IL_8P9A_397 IL_03109.3 | |
| IL_5TZS_034 | 1/1/447:448, 1/1/458:460 | Single bulged G | homologous IL_8P9A_398 IL_00225.13 | |
| IL_5TZS_021 | 1/1/481:482, 1/1/505:507 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_5TZS_031 | 1/1/517:518, 1/1/533:535 | Minor groove platform | homologous IL_8C3A_501 NA | |
| IL_5TZS_024 | 1/1/518:520, 1/1/532:533 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_5TZS_025 | 1/1/1157:1160, 1/1/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_5TZS_026 | 1/1/1173:1175, 1/1/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_5TZS_027 | 1/2/78:85, 1/2/325:329 | No text annotation | geometric IL_3PLA_001 NA | |
| IL_5TZS_032 | 1/2/78:96, 1/2/320:329 | No text annotation | ||
| IL_5TZS_028 | 1/2/97:98, 1/2/317:319 | No text annotation | ||
| IL_5TZS_029 | 1/2/111:115, 1/2/252:259 | Kink-turn | geometric IL_3NMU_004 IL_69229.3 | |
| IL_5TZS_030 | 1/2/115:200, 1/2/249:252 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5TZS_011 | No text annotation | ||
| IL_5TZS_020 | C-loop with extra cWW pair | ||
| IL_5TZS_022 | No text annotation | ||
| IL_5TZS_023 | Minor groove platform with extra cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5TZS_002 | 1/1/1161:1164, 1/1/1581:1587, 1/1/1609:1616 | No text annotation | homologous J3_8P9A_076 J3_25303.4 | |
| J3_5TZS_001 | 1/2/106:111, 1/2/259:263, 1/2/308:309 | No text annotation | ||
| J4_5TZS_001 | 1/1/99:107, 1/1/307:309, 1/1/357:361, 1/1/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J5_5TZS_001 | 1/1/54:57, 1/1/90:97, 1/1/386:388, 1/1/409:411, 1/1/422:426 | No text annotation | homologous J5_8P9A_017 J5_59910.6 |
Problematic loops
No problematic loops
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