5TZS Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5TZS_001 | 1/1/70:81 | No text annotation Not in a motif group | homologous HL_4V88_187 HL_40069.1 | |
| HL_5TZS_002 | 1/1/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_5TZS_003 | 1/1/243:250 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_27930.1 | |
| HL_5TZS_004 | 1/1/276:279 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_53837.1 | |
| HL_5TZS_005 | 1/1/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_5TZS_007 | 1/1/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_5TZS_008 | 1/1/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_5TZS_009 | 1/1/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_5TZS_010 | 1/1/520:532 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5TZS_006 | No text annotation | ||
| HL_5TZS_011 | No text annotation | ||
| HL_5TZS_012 | No text annotation | ||
| HL_5TZS_013 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5TZS_001 | 1/1/50:52, 1/1/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_5TZS_002 | 1/1/58:63, 1/1/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_5TZS_003 | 1/1/64:69, 1/1/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_5TZS_004 | 1/1/109:112, 1/1/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.3 | |
| IL_5TZS_005 | 1/1/113:116, 1/1/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_5TZS_006 | 1/1/117:122, 1/1/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_5TZS_007 | 1/1/143:149, 1/1/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_5TZS_008 | 1/1/150:152, 1/1/162:164 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_5TZS_009 | 1/1/204:206, 1/1/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_5TZS_010 | 1/1/206:208, 1/1/257:259 | No text annotation Not in a motif group | homologous IL_4V88_398 IL_95997.1 | |
| IL_5TZS_012 | 1/1/265:267, 1/1/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.3 | |
| IL_5TZS_013 | 1/1/270:273, 1/1/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_5TZS_014 | 1/1/275:276, 1/1/279:281 | Single bulged U Not in a motif group | homologous IL_4V88_401 IL_83039.14 | |
| IL_5TZS_015 | 1/1/311:316, 1/1/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_5TZS_016 | 1/1/318:323, 1/1/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_5TZS_017 | 1/1/389:391, 1/1/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_5TZS_018 | 1/1/411:413, 1/1/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_5TZS_019 | 1/1/439:441, 1/1/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.14 | |
| IL_5TZS_020 | 1/1/443:448, 1/1/458:461 | C-loop with extra cWW pair Not in a motif group | homologous IL_4V88_408 IL_93630.2 | |
| IL_5TZS_021 | 1/1/481:482, 1/1/505:507 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.3 | |
| IL_5TZS_022 | 1/1/483:487, 1/1/500:504 | No text annotation Not in a motif group | ||
| IL_5TZS_023 | 1/1/516:518, 1/1/533:536 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_411 IL_46796.1 | |
| IL_5TZS_024 | 1/1/518:520, 1/1/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_5TZS_025 | 1/1/1157:1160, 1/1/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_5TZS_026 | 1/1/1173:1175, 1/1/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_5TZS_027 | 1/2/78:85, 1/2/325:329 | No text annotation Not in a motif group | ||
| IL_5TZS_028 | 1/2/97:98, 1/2/317:319 | No text annotation Not in a motif group | ||
| IL_5TZS_029 | 1/2/111:115, 1/2/252:259 | Kink-turn Not in a motif group | geometric IL_3NMU_004 IL_07486.1 | |
| IL_5TZS_030 | 1/2/115:200, 1/2/249:252 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5TZS_011 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5TZS_001 | 1/2/106:111, 1/2/259:263, 1/2/308:309 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: