5TZS Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/1/70:81 | NA | NA |
| 2 | ➜ | 1/1/154:160 | NA | NA |
| 3 | ➜ | 1/1/243:250 | NA | NA |
| 4 | ➜ | 1/1/276:279 | NA | NA |
| 5 | ➜ | 1/1/330:338 | NA | NA |
| 6 | ➜ | 1/1/393:404 | NA | NA |
| 7 | ➜ | 1/1/414:419 | NA | NA |
| 8 | ➜ | 1/1/450:456 | NA | NA |
| 9 | ➜ | 1/1/520:532 | NA | NA |
Problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/1/50:52,1/1/428:429 | NA | NA |
| 2 | ➜ | 1/1/58:63,1/1/87:89 | NA | NA |
| 3 | ➜ | 1/1/64:69,1/1/82:86 | NA | NA |
| 4 | ➜ | 1/1/109:112,1/1/302:305 | NA | NA |
| 5 | ➜ | 1/1/113:116,1/1/300:301 | NA | NA |
| 6 | ➜ | 1/1/117:122,1/1/295:299 | NA | NA |
| 7 | ➜ | 1/1/143:149,1/1/165:172 | NA | NA |
| 8 | ➜ | 1/1/150:152,1/1/162:164 | NA | NA |
| 9 | ➜ | 1/1/204:206,1/1/259:263 | NA | NA |
| 10 | ➜ | 1/1/206:208,1/1/257:259 | NA | NA |
| 11 | ➜ | 1/1/265:267,1/1/288:289 | NA | NA |
| 12 | ➜ | 1/1/270:273,1/1/283:285 | NA | NA |
| 13 | ➜ | 1/1/275:276,1/1/279:281 | NA | NA |
| 14 | ➜ | 1/1/311:316,1/1/348:355 | NA | NA |
| 15 | ➜ | 1/1/318:323,1/1/345:346 | NA | NA |
| 16 | ➜ | 1/1/389:391,1/1/406:408 | NA | NA |
| 17 | ➜ | 1/1/411:413,1/1/420:422 | NA | NA |
| 18 | ➜ | 1/1/439:441,1/1/463:464 | NA | NA |
| 19 | ➜ | 1/1/443:448,1/1/458:461 | NA | NA |
| 20 | ➜ | 1/1/481:482,1/1/505:507 | NA | NA |
| 21 | ➜ | 1/1/483:487,1/1/500:504 | NA | NA |
| 22 | ➜ | 1/1/516:518,1/1/533:536 | NA | NA |
| 23 | ➜ | 1/1/518:520,1/1/532:533 | NA | NA |
| 24 | ➜ | 1/1/1157:1160,1/1/1617:1621 | NA | NA |
| 25 | ➜ | 1/1/1173:1175,1/1/1464:1466 | NA | NA |
| 26 | ➜ | 1/2/78:85,1/2/325:329 | NA | NA |
| 27 | ➜ | 1/2/97:98,1/2/317:319 | NA | NA |
| 28 | ➜ | 1/2/111:115,1/2/252:259 | NA | NA |
| 29 | ➜ | 1/2/115:200,1/2/249:252 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| 1 | ➜ | NA |
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/2/106:111,1/2/259:263,1/2/308:309 | NA | NA |
Problematic loops
No problematic loops
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