RNA 3D Hub //

7D5S Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7D5S_0131/SA/491:496GNRA
Not in a motif group		geometric
HL_4V9F_040
HL_42097.1
HL_7D5S_0141/SA/520:532No text annotation
Not in a motif group		geometric
HL_4V88_199
HL_06285.2
HL_7D5S_0151/SA/561:566No text annotation
Not in a motif group		geometric
HL_5NFV_001
HL_76539.2
HL_7D5S_0191/SA/1129:1139No text annotation
Not in a motif group
HL_7D5S_0231/SA/1594:1602No text annotation
Not in a motif group		geometric
HL_4OOG_001
HL_65572.2
HL_7D5S_0241/SA/1629:1636No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_7D5S_001No text annotation
HL_7D5S_002No text annotation
HL_7D5S_003No text annotation
HL_7D5S_004No text annotation
HL_7D5S_005GNRA
HL_7D5S_006GNRA
HL_7D5S_007No text annotation
HL_7D5S_008No text annotation
HL_7D5S_009No text annotation
HL_7D5S_010No text annotation
HL_7D5S_011No text annotation
HL_7D5S_012No text annotation
HL_7D5S_016No text annotation
HL_7D5S_017Other HL
HL_7D5S_018No text annotation
HL_7D5S_020No text annotation
HL_7D5S_021No text annotation
HL_7D5S_022GNRA
HL_7D5S_025Other HL
HL_7D5S_026No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7D5S_0011/3A/6:7,
1/SA/1117:1119		Single bulged G
Not in a motif group		geometric
IL_3IGI_004
IL_00225.2
IL_7D5S_0021/3A/48:50,
1/5A/466:470		No text annotation
Not in a motif group		geometric
IL_4V9F_053
IL_46796.1
IL_7D5S_0031/3A/78:85,
1/3A/325:329		No text annotation
Not in a motif group
IL_7D5S_0041/3A/97:98,
1/3A/317:319		No text annotation
Not in a motif group
IL_7D5S_0291/5A/497:499,
1/5A/539:542		Isolated non-canonical cWW with bulges
Not in a motif group		geometric
IL_3TD0_005
IL_82068.2
IL_7D5S_0301/5A/501:503,
1/5A/533:537		No text annotation
Not in a motif group
IL_7D5S_0341/SA/24:26,
1/SA/600:601		Single bulged C
Not in a motif group		geometric
IL_7KGA_001
IL_61258.12
IL_7D5S_0351/SA/482:483,
1/SA/504:506		Single bulged A
Not in a motif group		homologous
IL_4V88_409
IL_37497.2
IL_7D5S_0361/SA/514:516,
1/SA/536:543		No text annotation
Not in a motif group		homologous
IL_8C3A_420
IL_55023.1
IL_7D5S_0371/SA/517:520,
1/SA/532:535		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_6JDV_001
IL_30621.2
IL_7D5S_0381/SA/551:552,
1/SA/584:587		No text annotation
Not in a motif group		geometric
IL_5J7L_341
IL_71530.2
IL_7D5S_0391/SA/552:559,
1/SA/568:584		No text annotation
Not in a motif group
IL_7D5S_0511/SA/1157:1160,
1/SA/1617:1621		C-loop
Not in a motif group		homologous
IL_4V88_443
IL_63596.6
IL_7D5S_0521/SA/1173:1174,
1/SA/1464:1466		Single stack bend
Not in a motif group		geometric
IL_7RQB_058
IL_76488.2
IL_7D5S_0531/SA/1174:1176,
1/SA/1463:1464		Minor groove platform
Not in a motif group		geometric
IL_5TBW_039
IL_42622.2
IL_7D5S_0541/SA/1212:1216,
1/SA/1448:1451		No text annotation
Not in a motif group
IL_7D5S_0551/SA/1268:1270,
1/SA/1440:1441		No text annotation
Not in a motif group
IL_7D5S_0561/SA/1470:1474,
1/SA/1533:1574		No text annotation
Not in a motif group
IL_7D5S_0581/SA/1649:1652,
1/SA/1748:1751		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_5J7L_283
IL_30621.2
IL_7D5S_0591/SA/1653:1659,
1/SA/1741:1747		No text annotation
Not in a motif group
IL_7D5S_0601/SA/1659:1664,
1/SA/1737:1741		No text annotation
Not in a motif group
IL_7D5S_0611/SA/1665:1667,
1/SA/1734:1736		No text annotation
Not in a motif group		homologous
IL_4V88_470
IL_51629.2
IL_7D5S_0621/SA/1669:1672,
1/SA/1729:1732		Double sheared
Not in a motif group		homologous
IL_4V88_471
IL_09705.9
IL_7D5S_0631/SA/1672:1674,
1/SA/1727:1729		No text annotation
Not in a motif group		geometric
IL_3D0U_006
IL_95997.1

Problematic loops

#loop idProblemSequence
IL_7D5S_005No text annotation
IL_7D5S_006No text annotation
IL_7D5S_007Single bulged G
IL_7D5S_008No text annotation
IL_7D5S_009Isolated cWH basepair
IL_7D5S_010No text annotation
IL_7D5S_011Single stack bend
IL_7D5S_012Single bulged U
IL_7D5S_013No text annotation
IL_7D5S_014No text annotation
IL_7D5S_015Tandem non-canonical cWW pairs
IL_7D5S_016Single bulged U
IL_7D5S_017Single bulged U
IL_7D5S_018Multiple bulged bases
IL_7D5S_019Major groove minor groove platform; mini C-loop
IL_7D5S_020Single bulged A
IL_7D5S_021Single bulged U
IL_7D5S_022Tandem non-canonical cWW pairs
IL_7D5S_023No text annotation
IL_7D5S_024Stack outside cWW
IL_7D5S_025No text annotation
IL_7D5S_026Single stack bend
IL_7D5S_027Single bulged U
IL_7D5S_028Single bulged A
IL_7D5S_031No text annotation
IL_7D5S_032Single bulged U
IL_7D5S_033No text annotation
IL_7D5S_040No text annotation
IL_7D5S_041Single stack bend
IL_7D5S_042No text annotation
IL_7D5S_043Major groove platform; stack outside cWW
IL_7D5S_044Tandem non-canonical cWW pairs
IL_7D5S_045No text annotation
IL_7D5S_046Tandem non-canonical cWW pairs
IL_7D5S_047Tandem non-canonical cWW pairs
IL_7D5S_048No text annotation
IL_7D5S_049Other IL
IL_7D5S_050tSH-tHW-tHS
IL_7D5S_057Tandem non-canonical cWW pairs
IL_7D5S_064Tandem non-canonical cWW pairs
IL_7D5S_065Triple sheared
IL_7D5S_066No text annotation
IL_7D5S_067No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7D5S_0031/SA/1150:1151,
1/SA/1627:1629,
1/SA/1636:1640		No text annotation
Not in a motif group
J3_7D5S_0041/SA/1168:1171,
1/SA/1468:1470,
1/SA/1574:1577		No text annotation
Not in a motif group		homologous
J3_4V88_036
NA
J3_7D5S_0051/SA/1216:1220,
1/SA/1263:1268,
1/SA/1441:1448		No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
J3_7D5S_001No text annotation
J3_7D5S_002No text annotation

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