RNA 3D Hub //

7OHT Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OHT_0011/1/194:201T-loop with 1 bulged base
Not in a motif group		homologous
HL_5TBW_005
HL_68493.6
HL_7OHT_0021/1/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98557.5
HL_7OHT_0031/1/216:224No text annotation
Not in a motif group		homologous
HL_5TBW_007
HL_08002.6
HL_7OHT_0061/1/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_43074.18
HL_7OHT_0301/1/3194:3197No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_7OHT_004No text annotation
HL_7OHT_005No text annotation
HL_7OHT_007No text annotation
HL_7OHT_008No text annotation
HL_7OHT_009No text annotation
HL_7OHT_010No text annotation
HL_7OHT_011No text annotation
HL_7OHT_012Other HL
HL_7OHT_013No text annotation
HL_7OHT_014No text annotation
HL_7OHT_015No text annotation
HL_7OHT_016No text annotation
HL_7OHT_017No text annotation
HL_7OHT_018No text annotation
HL_7OHT_019No text annotation
HL_7OHT_020No text annotation
HL_7OHT_021No text annotation
HL_7OHT_022No text annotation
HL_7OHT_023No text annotation
HL_7OHT_024No text annotation
HL_7OHT_025No text annotation
HL_7OHT_026GNRA
HL_7OHT_027GNRA
HL_7OHT_028No text annotation
HL_7OHT_029No text annotation
HL_7OHT_031No text annotation
HL_7OHT_032No text annotation
HL_7OHT_033No text annotation
HL_7OHT_034No text annotation
HL_7OHT_035No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OHT_0011/1/337:339,
1/2/25:26		Single bulged A
Not in a motif group		homologous
IL_5TBW_013
IL_80007.16
IL_7OHT_0021/1/404:410,
1/2/13:19		Triple sheared with non-canonical cWW
Not in a motif group		geometric
IL_7RQB_001
IL_66414.5
IL_7OHT_0031/1/512:513,
1/1/577:579		Single bulged A
Not in a motif group		homologous
IL_5TBW_018
IL_40508.4
IL_7OHT_0041/1/517:525,
1/1/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_41593.1
IL_7OHT_0051/1/531:538,
1/1/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_94501.1
IL_7OHT_0061/1/680:684,
1/1/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_92343.1
IL_7OHT_0071/1/954:957,
1/1/964:967		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_4EYA_008
IL_85877.10
IL_7OHT_0091/1/1120:1122,
1/1/1136:1138		No text annotation
Not in a motif group		homologous
IL_5TBW_046
IL_01312.13
IL_7OHT_0101/1/1167:1171,
1/1/1328:1332		UAA/GAN
Not in a motif group		homologous
IL_5TBW_048
IL_53523.5
IL_7OHT_0111/1/1173:1180,
1/1/1325:1326		SSU/LSU pseudoknot
Not in a motif group		geometric
IL_7A0S_034
IL_15861.6
IL_7OHT_0121/1/1180:1182,
1/1/1324:1325		Single bulged U
Not in a motif group		homologous
IL_5TBW_050
IL_83039.11
IL_7OHT_0191/1/1376:1378,
1/1/1428:1431		Isolated cWS basepair
Not in a motif group		homologous
IL_5TBW_057
IL_01312.13
IL_7OHT_0201/1/1385:1387,
1/1/1420:1421		Single bulged A
Not in a motif group		homologous
IL_5TBW_058
IL_80007.16
IL_7OHT_0421/1/3164:3166,
1/1/3284:3286		No text annotation
Not in a motif group		geometric
IL_7A0S_026
IL_01312.13
IL_7OHT_0441/1/3177:3179,
1/1/3210:3211		Single bulged A
Not in a motif group		geometric
IL_5TBW_123
IL_80007.16
IL_7OHT_0451/1/3179:3188,
1/1/3204:3210		No text annotation
Not in a motif group		homologous
IL_5TBW_124
IL_56867.1
IL_7OHT_0461/1/3192:3194,
1/1/3197:3200		Isolated cWH basepair
Not in a motif group		geometric
IL_5F5F_001
IL_42589.6

Problematic loops

#loop idProblemSequence
IL_7OHT_008No text annotation
IL_7OHT_013No text annotation
IL_7OHT_014No text annotation
IL_7OHT_015Single bulged U
IL_7OHT_016Kink-turn
IL_7OHT_017No text annotation
IL_7OHT_018Major groove platform with extra cWW
IL_7OHT_021No text annotation
IL_7OHT_022Major groove platform with extra pair
IL_7OHT_023No text annotation
IL_7OHT_024No text annotation
IL_7OHT_025UU cWW
IL_7OHT_026No text annotation
IL_7OHT_027No text annotation
IL_7OHT_028Single stack bend
IL_7OHT_029Triple sheared
IL_7OHT_030No text annotation
IL_7OHT_031No text annotation
IL_7OHT_032Minor groove platform with intercalation
IL_7OHT_033No text annotation
IL_7OHT_034No text annotation
IL_7OHT_035Double sheared
IL_7OHT_036No text annotation
IL_7OHT_0378x7 Sarcin-Ricin; G-bulge
IL_7OHT_038Major groove minor groove platform with tHH
IL_7OHT_039No text annotation
IL_7OHT_040Multiple bulged bases
IL_7OHT_041No text annotation
IL_7OHT_043No text annotation
IL_7OHT_047No text annotation
IL_7OHT_048No text annotation
IL_7OHT_049Tandem non-canonical cWW pairs
IL_7OHT_050Tandem non-canonical cWW pairs
IL_7OHT_051Single bulged U
IL_7OHT_052No text annotation
IL_7OHT_053No text annotation
IL_7OHT_054No text annotation
IL_7OHT_055No text annotation
IL_7OHT_056tWS-tSW
IL_7OHT_057No text annotation
IL_7OHT_058No text annotation
IL_7OHT_059Single stack bend
IL_7OHT_060Symmetric double minor groove platform
IL_7OHT_0618x7 Sarcin-Ricin; G-bulge
IL_7OHT_062No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OHT_0011/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
Not in a motif group		homologous
J3_5TBW_003
NA
J3_7OHT_0021/1/983:987,
1/1/1062:1066,
1/1/1092:1100		No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
J3_7OHT_003No text annotation
J3_7OHT_004No text annotation
J3_7OHT_005No text annotation
J3_7OHT_006No text annotation

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