#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-62-5
1 HL_5TBW_0395TBW0.70040Other HL1 LSU rRNAA1760C1761C1762U1763U1764U1765
2 HL_5J7L_1805J7L0.71430Other HLDA LSU rRNAC1868G1869C1870A1871A1872G1873cWW
3 HL_4V9F_0224V9F0.62840Other HL0 LSU rRNAU733U734C735A736A737G738cWW
4 HL_5DDO_0035DDO0.56930GNRA with GA tSW pairBL-glutamine riboswitch (58-MER)G11G12A13A14A15C16cWW
5 HL_5VW1_0035VW10.51960GNRA with GA tSW pairCsgRNAU72G73A74A75A76A77cWWntsS
6 HL_4ZT0_0064ZT00.51780GNRA with GA tSW pairDsingle-guide RNAU72G73A74A75A76A77cWW
7 HL_6MJ0_0086MJ00.56430GNRA with GA tSW pairBtRNA-like 3' UTR elementC49G50A51A52A53G54cWW
8 HL_3AM1_0023AM10.48260Other HLBASL-truncated tRNAC32U33U34C35G36G37cWW
9 HL_5J7L_1645J7L0.56400Other HLDA LSU rRNAU1222G1223U1224G1225A1226G1227cWW
10 HL_1G1X_0041G1X0.39120Other HLI16S RIBOSOMAL RNAC590G591A592A593A594G649cWW
11 HL_4V88_2074V880.37160Other HLA6 SSU rRNAC937G938A939A940A941G942cWW
12 HL_6SVS_0016SVS0.32100GNRAARNA (79-mer)C26G27A28A29A30G31cWW
13 HL_4OQU_0044OQU0.34100Other HLASAM-I/IV riboswitchC76G77A78G79A80G81cWW
14 HL_1G1X_0031G1X0.38630Other HLE16S RIBOSOMAL RNAC726G727A728A729G730G731cWW
15 HL_1G1X_0051G1X0.37680Other HLJ16S RIBOSOMAL RNAC726G727A728A729G730G731cWW
16 HL_4LFB_0164LFB0.39630Other HLA SSU rRNAC726G727A728A729G730G731cWW
17 HL_5J7L_0165J7L0.34750GNRA relatedAA SSU rRNAC726G727A728A729G730G731cWW
18 HL_6CZR_0876CZR0.38180Other HL1a SSU rRNAC710G711A712A713G714G715cWW
19 HL_6UFG_0056UFG0.41950Other HLARNA (166-MER)C144G145A146A147A148G149cWW
20 HL_1MFQ_0011MFQ0.49760Other HLA SRP RNAG146G147G148A149G150C151cWW
21 HL_1JID_0011JID0.47020Other HLBHELIX 6 OF HUMAN SRP RNAG146G147G148A149G150C151cWW
22 HL_1L9A_0011L9A0.47280Other HLBsignal recognition particle RNA S domainG146G147G148A149G150C151cWW
23 HL_4C7O_0014C7O0.36660Other HLESRP RNAC19G20G21A22A23G24cWW
24 HL_6UFH_0046UFH0.36230Other HLARNA (167-MER)C106G107A108A109A110G111cWW
25 HL_5U3G_0025U3G0.27150GNRABGuanidine-I riboswitchC47G48A49A50A51G52cWWntSH
26 HL_6UFG_0046UFG0.19030GNRAARNA (166-MER)C105G106A107A108A109G110cWWntSH
27 HL_3SUX_0023SUX0.21920GNRAX THF riboswitchC65G66A67A68A69G70cWW
28 HL_6CU1_0026CU10.28330GNRAAY RNA-likeC42G43A44A45A46G47cWW
29 HL_4PQV_0014PQV0.35270GNRAAFlavivirus 3' UTR stem loop IVC13G14A15A16A17G18cWW
30 HL_3E5C_0023E5C0.30700GNRAASMK box (SAM-III) RiboswitchC41G42A43A44A45G46cWW
31 HL_6CB3_0066CB30.28230GNRABRNA (99-MER)C76G77A78A79A80G81cWW
32 HL_2ZZM_0032ZZM0.29230GNRABRNA (84-MER)C47G47|||AU47|||BA47|||CG47|||DG47|||EcWW
33 HL_7A0S_0707A0S0.33020GNRAY 5S rRNAC88G89C90A91G92G93cWW
34 HL_5J7L_1915J7L0.23880GNRADA LSU rRNAC2374G2375A2376A2377A2378G2379cWW
35 HL_4WF9_0204WF90.23750GNRAX LSU rRNAC674G675A676A677A678G679cWW
36 HL_7A0S_0207A0S0.25480GNRAX LSU rRNAC640G641A642A643A644G645cWW
37 HL_4V9F_0604V9F0.24170GNRA0 LSU rRNAC2411G2412A2413A2414A2415G2416cWW
38 HL_6JQ5_0026JQ50.24620GNRAARNA (82-MER)C45G46A47A48A49G50cWW
39 HL_6DME_0016DME0.24880GNRAAppGpp RiboswitchC25G26A27G28A29G30cWW
40 HL_6CZR_0956CZR0.33310GNRA1a SSU rRNAC1059G1060U1061G1062A1063G1064cWW
41 HL_4V9F_0334V9F0.43680GNRA0 LSU rRNAC1326G1327A1328G1329A1330G1331cWW
42 HL_2BTE_0032BTE0.41180GNRAB tRNAC46G47C47|||AA47|||BA47|||CG47|||DcWW
43 HL_4WF9_0594WF90.37490GNRAX LSU rRNAC2621G2622U2623G2624A2625G2626cWW
44 HL_7RQB_0637RQB0.30680GNRA1A LSU rRNAC2594G2595U2596G2597A2598G2599cWWntSH
45 HL_7A0S_0627A0S0.30730GNRAX LSU rRNAC2573G2574U2575G2576A2577G2578cWW
46 HL_4WF9_0154WF90.29960GNRAX LSU rRNAC508G509U510G511A512G513cWW
47 HL_7RQB_0157RQB0.27770GNRA1A LSU rRNAC462G463U464G465A466G467cWW
48 HL_5J7L_1475J7L0.27470GNRADA LSU rRNAC462G463U464G465A466G467cWW
49 HL_4QK9_0024QK90.29610GNRAAC-di-AMP riboswitchC56G57U58A59A60G61cWW
50 HL_2OIU_0032OIU0.27770GNRAPL1 Ribozyme RNA LigaseC59G60A61A62A63G64cWW
51 HL_3NPQ_0013NPQ0.31670GNRAAS-ADENOSYLHOMOCYSTEINE RIBOSWITCHC20G21A22G23A24G25cWW
52 HL_3NKB_0023NKB0.30660GNRABThe hepatitis delta virus ribozymeC49G50A51A52A53G54cWW
53 HL_4V9F_0154V9F0.32610GNRA0 LSU rRNAU468G469U470G471A472A473cWW
54 HL_7A0S_0157A0S0.32680GNRAX LSU rRNAC473G474U475G476A477G478cWW
55 HL_7RQB_0327RQB0.35590GNRA1A LSU rRNAC1222G1223C1224G1225A1226G1227cWW
56 HL_4YAZ_0034YAZ0.32890GNRARCyclic di-GMP-I riboswitchC25G26C27G28A29G30cWW
57 HL_4V9F_0174V9F0.33900GNRA0 LSU rRNAC576G577C578G579A580G581cWW
58 HL_4V9F_0654V9F0.31890GNRA0 LSU rRNAC2629G2630U2631G2632A2633G2634cWW
59 HL_5J7L_1965J7L0.29980GNRADA LSU rRNAC2594G2595U2596G2597A2598G2599cWW
60 HL_5TBW_0645TBW0.28990GNRA1 LSU rRNAC2963G2964U2965G2966A2967G2968cWW
61 HL_7RQB_0697RQB0.33950GNRA1A LSU rRNAC2856G2857C2858G2859A2860G2861cWW
62 HL_5J7L_0275J7L0.38660GNRAAA SSU rRNAC1265G1266C1267G1268A1269G1270cWW
63 HL_4LFB_0244LFB0.38040GNRAA SSU rRNAC1076G1077U1078G1079A1080G1081cWW
64 HL_5J7L_0235J7L0.38830GNRAAA SSU rRNAU1076G1077U1078G1079A1080A1081cWW
65 HL_5TBW_0305TBW0.41400GNRA1 LSU rRNAC1403G1404U1405A1406A1407G1408cWW
66 HL_3W3S_0033W3S0.32970GNRABSelenocysteine transfer RNAC47|||FG47|||GC47|||HA47|||IA47|||JG47|||KcWW
67 HL_4LVW_0024LVW0.36330GNRAATHF riboswitchC58G59A60G61A62G63cWW
68 HL_5J7L_1905J7L0.32990Other HLDA LSU rRNAU2356G2357A2358C2359G2360G2361cWW
69 HL_5TBW_0595TBW0.30950GNRA1 LSU rRNAU2744G2745A2746A2747A2748G2749cWW
70 HL_5TBW_0165TBW0.33190GNRA1 LSU rRNAU707G708A709A710A711G712cWW
71 HL_7RQB_0477RQB0.32420GNRA1A LSU rRNAU1864G1865C1866A1876A1877G1878cWW
72 HL_7A0S_0477A0S0.29910GNRAX LSU rRNAU1856G1857C1858A1859A1860G1861cWW
73 HL_6CZR_0816CZR0.23150GNRA1a SSU rRNAC375G376C377A378A379G380cWW
74 HL_7RQB_0717RQB0.26730GNRA1B 5S rRNAG86G87C88G89A90C91cWW
75 HL_5TBW_0365TBW0.36150GNRA1 LSU rRNAG1634G1635U1636A1637A1638C1639cWW
76 HL_4V88_2144V880.31460GNRAA6 SSU rRNAA1296G1297U1298G1299A1300U1301cWW
77 HL_5TBW_0105TBW0.27460Other HL1 LSU rRNAA357G358U359G360A361U362cWW
78 HL_4WFL_0034WFL0.24510GNRAA LSRP RNAG81G82U83A84A85C86cWW
79 HL_3G9C_0083G9C0.24340GNRAQGLMS RIBOZYMEG108G109U110G111A112C113cWW
80 HL_2Z75_0042Z750.31040GNRAB glmS ribozymeG113G114C115G116A117C118cWW
81 HL_3IGI_0033IGI0.27820GNRAAGroup IIC intronG89G90C91G92A93C94cWW
82 HL_4WF9_0654WF90.29930Other HLX LSU rRNAG2876G2877U2878G2879A2880C2881cWW
83 HL_4LFB_0284LFB0.26190Other HLA SSU rRNAG1265G1266C1267A1268A1269C1270cWW
84 HL_5J7L_2025J7L0.24690Other HLDA LSU rRNAA2856G2857C2858G2859A2860U2861cWW
85 HL_7A0S_0687A0S0.25370GNRAX LSU rRNAA2831G2832C2833A2834A2835U2836cWWntSH
86 HL_1U9S_0021U9S0.24990GNRAARIBONUCLEASE PG99G100U101A102A103C104cWWntSH
87 HL_5FQ5_0015FQ50.25760GNRAASGRNAA32G33A34A35A36U37cWW
88 HL_1U9S_0041U9S0.22650GNRAARIBONUCLEASE PG204G205C206A207A208C209cWWntSH
89 HL_7A0S_0577A0S0.22170GNRAX LSU rRNAG2353G2354A2355A2356A2357C2358cWW
90 HL_7RQB_0207RQB0.22330GNRA1A LSU rRNAG629G630A631A632A633C634cWW
91 HL_5J7L_1525J7L0.19420GNRADA LSU rRNAG629G630A631A632A633C634cWW
92 HL_5B2T_0015B2T0.15460GNRAAGuide RNAA32G33A34A35A36U37cWW
93 HL_6N2V_0016N2V0.16490GNRAAX. oryzae Mn riboswitch optimized constructG24G25A26A27A28C29cWW
94 HL_6U8D_0026U8D0.17700GNRAAJIIIabc RNA (68-MER)G180G198A199A200A201C219cWW
95 HL_6CB3_0056CB30.22270GNRABRNA (99-MER)G50G51A52A53A54C55cWW
96 HL_4OQU_0014OQU0.20170GNRAASAM-I/IV riboswitchG13G14A15G16A17C18ncWW
97 HL_5F9F_0035F9F0.23440GNRAFRNA (24-mer)A10G11U12G13A14U15cWW
98 HL_5TBW_1865TBW0.18840GNRAAS 5S rRNAG88G89U90G91A92C93cWWntSH
99 HL_1UN6_0041UN60.15840GNRAF5S RIBOSOMAL RNAG82G83A84A85A86C94cWWntSH
100 HL_6JOO_0016JOO0.15100GNRABGuide RNAG32G33A34A35A36C37cWWntSH
101 HL_6UFH_0026UFH0.18650GNRAARNA (167-MER)G45G46A47A48A49C50cWWntSH
102 HL_5VW1_0015VW10.14580GNRACsgRNAA32G33A34A35A36U37cWW
103 HL_4V88_2104V880.19330GNRAA6 SSU rRNAA1084G1085A1086A1087A1088U1089cWW
104 HL_5TBW_0485TBW0.22670Other HL1 LSU rRNAA2220G2221A2222A2223A2224U2225cWW
105 HL_4Y1M_0044Y1M0.23460Other HLBE. coli yybP-ykoY riboswitchA81G82A83A84A85U86cWWntSH
106 HL_6CZR_0746CZR0.31750GNRA1a SSU rRNAG153G154A155A156A157C158ncWWntSH
107 HL_4V9F_0404V9F0.21680GNRA0 LSU rRNAG1628G1629A1630A1631A1632C1633cWWntSH
108 HL_4LFB_0034LFB0.26180GNRAA SSU rRNAG158G159A160A161A162C163cWWntSH
109 HL_5J7L_0035J7L0.23780GNRAAA SSU rRNAG158G159A160A161A162C163cWWntSH
110 HL_5TBW_0195TBW0.23310GNRA1 LSU rRNAG844G845A846A847A848C849cWWntSH
111 HL_1L9A_0021L9A0.23160GNRABsignal recognition particle RNA S domainG197G198A199A200A201C202cWWntSH
112 HL_4OQU_0034OQU0.21690GNRAASAM-I/IV riboswitchG57G58A59G60A61C62cWWntSH
113 HL_5FJC_0025FJC0.19370GNRAA SAM-I riboswitchA49G50A51A52A53U54cWWntSH
114 HL_5FJC_0035FJC0.20410GNRAA SAM-I riboswitchG73G74A75A76A77C78cWWntSH
115 HL_4AOB_0034AOB0.19010GNRAA SAM-I riboswitchG73G74A75A76A77C78cWWntSH
116 HL_2R8S_0012R8S0.22720GNRARP4-P6 RNA RIBOZYME DOMAING149G150A151A152A153C154cWWntSH
117 HL_3IGI_0063IGI0.21510GNRAAGroup IIC intronG274G275A276A277A278C279cWWntSH
118 HL_6DVK_0016DVK0.21400GNRAHRNA (95-MER)G45G46A47A48A49C50cWWntSH
119 HL_5DCV_0025DCV0.27690GNRADRNA (47-MER)G26G27A28A29A30C31cWWntSH
120 HL_5XTM_0015XTM0.26800GNRABRNA (47-MER)G24G25A26A27A28C29cWWntSH
121 HL_5XTM_0025XTM0.27570GNRADRNA (47-MER)G24G25A26A27A28C29cWWntSH
122 HL_3MOJ_0013MOJ0.24310GNRAA LSU rRNAG2529G2530A2531A2532A2533C2534cWWntSH
123 HL_3RW6_0013RW60.26980GNRAHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAG27G28A29A30A31C32cWWtSH
124 HL_5DDO_0015DDO0.21560GNRAAL-glutamine riboswitch (58-MER)G11G12A13A14A15C16cWW
125 HL_1U6B_0011U6B0.23040GNRAB197-MERG23G24A25A26A27C28cWWntSH
126 HL_3V7E_0033V7E0.22730GNRAC SAM-I riboswitchG105G106A107A108A109C110cWWntSH
127 HL_1NBS_0071NBS0.25590GNRAB RNase P class BA204G205A206A207A208U209cWWntSH
128 HL_4ZT0_0044ZT00.23090GNRADsingle-guide RNAA32G33A34A35A36U37cWWntSH
129 HL_4AOB_0024AOB0.20930GNRAA SAM-I riboswitchA49A50A51A52A53U54cWWtSH
130 HL_1MFQ_0021MFQ0.26540GNRAA SRP RNAG197G198A199A200A201C202cWWtSH
131 HL_4V9F_0704V9F0.26460GNRA0 LSU rRNAG2876G2877U2878A2879A2880C2881cWWntSH
132 HL_3E5C_0013E5C0.25120GNRAASMK box (SAM-III) RiboswitchG18G19A20A21A22C23cWWtSH
133 HL_5DDP_0015DDP0.21400GNRAA glnAG11G12A13A14A15C16cWWntSH
134 HL_4V9F_0204V9F0.23750GNRA0 LSU rRNAG690G691A692A693A694C695cWWntSH
135 HL_5FQ5_0035FQ50.27090GNRAASGRNAU72G73A74A75A76A77ncWWntSH
136 HL_4V9F_0284V9F0.22581GNRA0 LSU rRNAG1054G1055U1056A1057A1058C1060cWWntSH
137 HL_5TBW_0255TBW0.30221GNRA1 LSU rRNAG1126G1127U1128A1129A1130C1132cWWntSH
138 HL_7A0S_0267A0S0.27652GNRA variationX LSU rRNAA966G967C968A970A971U973cWWntSH
139 HL_7RQB_0277RQB0.24842GNRA variation1A LSU rRNAC955G956A957A959A960G962cWWntSH
140 HL_4WF9_0274WF90.28432GNRAX LSU rRNAU999G1000A1001A1003A1004G1006cWWntSH
141 HL_4V9F_0094V9F0.21670GNRA0 LSU rRNAC252U253C254A255C256G257cWWntSH
142 HL_4V9F_0454V9F0.21951GNRA0 LSU rRNAC1793G1794G1795A1796A1797G1799cWW
143 HL_4WF9_0544WF90.21700GNRAX LSU rRNAC2401G2402A2403A2404A2405G2406cWW
144 HL_4LFB_0104LFB0.17450GNRAA SSU rRNAC379G380C381A382A383G384cWWntSH
145 HL_5J7L_0105J7L0.12600GNRAAA SSU rRNAC379G380C381A382A383G384cWWntSH
146 HL_7RQB_0587RQB0.14160GNRA1A LSU rRNAC2374G2375A2376A2377A2378G2379cWWntSH
147 HL_5TPY_0045TPY0.12230GNRAARNA (71-MER)C13G14A15A16A17G18cWWntSH
148 HL_4V9F_0234V9F0.08910GNRA0 LSU rRNAC804G805A806A807A808G809cWWntSH
149 HL_5TBW_0115TBW0.00000GNRA1 LSU rRNAU382G383A384A385A386A387cWWntSH
150 HL_4R4V_0044R4V0.11880GNRAAVS ribozyme RNAC735G736U737A738A739G740cWWntSH
151 HL_5TPY_0065TPY0.10310GNRAARNA (71-MER)C62G63A64A65A66G67cWWntSH
152 HL_3MXH_0013MXH0.11080GNRARc-di-GMP riboswitchC31G32A33A34A35G36cWWntSH
153 HL_5TBW_0135TBW0.15610GNRA1 LSU rRNAC599G600U601A602A603G604cWWntSH
154 HL_3IWN_0013IWN0.12500GNRAAC-di-GMP riboswitchC21G22A23A24A25G26cWWntSH
155 HL_4ENC_0024ENC0.12150GNRAAFluoride riboswitchU28G29A30A31A32A33cWWntSH
156 HL_3LQX_0013LQX0.17320GNRABSRP RNAC153G154A155A156A157G158cWWtSH
157 HL_1Q96_0011Q960.16200GNRAAsarcin/ricin 28S rRNAU13G14A15G16A17A18cWWntSH
158 HL_6N2V_0036N2V0.15900GNRAAX. oryzae Mn riboswitch optimized constructC76G77A78A79A80G81cWWntSH
159 HL_4NLF_0014NLF0.13830GNRAA23S ribosomal RNA Sarcin Ricin LoopC2658G2659A2660G2661A2662G2663cWWntSH
160 HL_5M0J_0015M0J0.19010GNRAEASH1 E3 (28 nt-loop)C12G13A14A15A16G17cWWntSH
161 HL_5M0J_0025M0J0.16800GNRAFASH1 E3 (28 nt-loop)C12G13A14A15A16G17cWWntSH
162 HL_5M0I_0025M0I0.13970GNRAFASH1-E3 element, RNA (28-MER)C12G13A14A15A16G17cWWntSH
163 HL_5M0I_0015M0I0.14110GNRAEASH1-E3 element, RNA (28-MER)C12G13A14A15A16G17cWWntSH
164 HL_4V9F_0724V9F0.16240GNRA9 5S rRNAC89G90C91G92A93G94cWWntSH
165 HL_4Y1M_0024Y1M0.15320GNRABE. coli yybP-ykoY riboswitchC24G25A26A27A28G29cWWntSH
166 HL_6N2V_0026N2V0.12830GNRAAX. oryzae Mn riboswitch optimized constructC56G57A58A59A60G61cWWntSH
167 HL_1RLG_0021RLG0.11590GNRAD25-MERC9G10A11A12A13G14cWWntSH
168 HL_4V9F_0544V9F0.15120GNRA0 LSU rRNAC2248G2249G2250G2251A2252G2253cWWntSH
169 HL_3AM1_0033AM10.17350GNRABASL-truncated tRNAC45G46A47G48A49G50cWWntSH
170 HL_5J7L_0045J7L0.14530GNRAAA SSU rRNAC186G187C188A189A190G191cWWntSH
171 HL_3NMU_0023NMU0.12830GNRAERNA (34-MER)C18G19A20A21A22G23cWWntSH
172 HL_3NVI_0023NVI0.14420GNRAFRNA (24-mer)C9G10A11A12A13G14cWWntSH
173 HL_4V88_2114V880.16220GNRAA6 SSU rRNAC1121G1122C1123A1124A1125G1126cWWntSH
174 HL_4LFB_0204LFB0.17830GNRAA SSU rRNAC897G898C899A900A901G902cWWntSH
175 HL_5J7L_0205J7L0.19250GNRAAA SSU rRNAC897G898C899A900A901G902cWWntSH
176 HL_4V9F_0484V9F0.19990GNRA0 LSU rRNAC1862G1863C1864A1865A1866G1867cWWntSH
177 HL_6CZR_0916CZR0.17320GNRA1a SSU rRNAC875G876C877A878A879G880cWW
178 HL_6JDV_0026JDV0.18310GNRABsgRNAU86G87A88A89A90A91cWWtSH
179 HL_5F9R_0035F9R0.18540GNRAARNA (116-MER)U90G91A92A93A94A95cWWntSH
180 HL_3KTW_0023KTW0.20520GNRAC SRP RNAC209G210G211A212A213G214cWWntSH
181 HL_4V9F_0664V9F0.16850GNRA0 LSU rRNAC2695G2696A2697G2698A2699G2700cWWntSH
182 HL_5TBW_0655TBW0.14570GNRA1 LSU rRNAC3025G3026A3027G3028A3029G3030cWWntSH
183 HL_7RQB_0647RQB0.16730GNRA1A LSU rRNAC2658G2659A2660G2661A2662G2663cWWtSH
184 HL_7A0S_0637A0S0.19020GNRAX LSU rRNAC2637G2638A2639G2640A2641G2642cWWtSH
185 HL_5J7L_1975J7L0.15710GNRADA LSU rRNAC2658G2659A2660G2661A2662G2663cWWntSH
186 HL_4WF9_0604WF90.19040GNRAX LSU rRNAC2685G2686A2687G2688A2689G2690cWWntSH
187 HL_7RQB_0467RQB0.15720GNRA1A LSU rRNAC1806G1807U1808A1809A1810G1811cWWntSH
188 HL_1MZP_0011MZP0.16530GNRABfragment of 23S rRNAC25G26C27A28A29G30cWWntSH
189 HL_5TBW_0175TBW0.14900GNRA1 LSU rRNAC732G733C734A735A736G737cWWntSH
190 HL_3NDB_0023NDB0.15090GNRAM SRP RNAC208G209G210A211A212G213cWWtSH
191 HL_4RUM_0024RUM0.12610GNRAANiCo riboswitch RNAC51G52A53A54A55G56cWWntSH
192 HL_5B2P_0015B2P0.13510GNRABGuide RNAC35G36A37A38A39G40cWWtSH
193 HL_1G1X_0011G1X0.12620GNRAD16S RIBOSOMAL RNAC590G591A592A593A594G649cWWntSH
194 HL_2OIU_0012OIU0.12860GNRAPL1 Ribozyme RNA LigaseC10G11A12A13A14G15cWWntSH
195 HL_4Y1M_0034Y1M0.13610GNRABE. coli yybP-ykoY riboswitchU55G56A57A58A59A60cWWntSH
196 HL_5X2G_0015X2G0.10160GNRABsgRNAU32G33A34A35A36A37cWWntSH
197 HL_5B2T_0035B2T0.13860GNRAAGuide RNAU72G73A74A75A76A77cWWntSH
198 HL_5Y7M_0025Y7M0.12570GNRADRNA (52-MER)C24G25A26A27A28G29cWWntSH
199 HL_4PLX_0014PLX0.12210GNRAACore ENE hairpin and A-rich tract from MALAT1C24G25A26A27A28G29cWWntSH
200 HL_5UZ6_0015UZ60.10280GNRAARNA (25-MER)C15G16A17A18A19G20cWWntSH
201 HL_5VCI_0015VCI0.14930GNRAARNA (22-mer)C16G17A18A19A20G21cWWntSH
202 HL_4JF2_0014JF20.14340GNRAAPreQ1-II RiboswitchC8G9A10A11A12G13cWWntSH
203 HL_5D5L_0015D5L0.14350GNRAAPreQ1-II riboswitchC8G9A10A11A12G13cWWntSH
204 HL_4LFB_0274LFB0.13070GNRAA SSU rRNAC1165G1166A1167A1168A1169G1171cWWntSH
205 HL_4FRG_0024FRG0.16640GNRABcobalamin riboswitch aptamer domainC46G47A48A49A50G51cWWntSH
206 HL_6JQ5_0046JQ50.15400GNRABRNA (82-MER)C45G46A47A48A49G50cWWntSH
207 HL_4BW0_0014BW00.20000GNRAAHMKT-7C9G10A11A12A13G14cWWntSH
208 HL_1KH6_0021KH60.15300GNRAAJIIIabcC28G29A30A31A32G33cWWntSH
209 HL_2IL9_0032IL90.19890GNRAARibosomal Binding Domain of the IRES RNAC6119G6119|||AA6119|||BA6119|||CA6119|||DG6119|||EncWWtSH
210 HL_7RQB_0167RQB0.21700GNRA1A LSU rRNAC487G488G489G491A492G493cWWtSH
211 HL_7A0S_0167A0S0.25210GNRAX LSU rRNAC498G499G500G501A502G503cWWntSH
212 HL_4WF9_0164WF90.21640GNRAX LSU rRNAC533G534G535A536A537G538cWWntSH
213 HL_4W90_0034W900.16510GNRAC cyclic di-AMP riboswitchC82G83A84A85A86G87cWWntSH
214 HL_3P22_0013P220.23140GNRAACore ENE hairpin from KSHV PAN RNAC17G18A19A20A21G22cWWntSH
215 HL_3CUL_0013CUL0.22840GNRACRNA (92-MER)C7G8A9A10A11G12cWWntSH
216 HL_5TBW_0235TBW0.20861GNRA1 LSU rRNAC1023G1024A1025A1026A1027G1029cWW
217 HL_6UFH_0056UFH0.18100GNRAARNA (167-MER)C145G146A147A148A149G150cWWntSH
218 HL_1KXK_0011KXK0.21580GNRAAai5g group II Self-splicing intronU33G34A35A36A37G38cWWntSH
219 HL_4K27_0014K270.22230GNRAUMyotonic Dystrophy Type 2 RNAU26G27A28A29A30G31cWWntSH
220 HL_4PCJ_0014PCJ0.22380GNRAAtrCUG-3('5)U16G17A18A19A20G21cWWntSH
221 HL_5BTM_0015BTM0.23150GNRAARNA (55-mer)U26G27A28A29A30G31cWWntSH
222 HL_6WPI_0016WPI0.22030GNRABRNA (47-MER)U25G26A27A28A29G30cWWntSH
223 HL_5M0H_0015M0H0.24370GNRAAASH1 E3 (42 nt-TL/TLR)U21G22A23A24A25G26cWWntSH
224 HL_4K50_0014K500.18480GNRABRNA (33-MER)U587G588A589A590A591G592cWWntSH
225 HL_5J7L_0075J7L0.28030GNRAAA SSU rRNAU296G297A298G299A300G301cWWntSH
226 HL_4LFB_0074LFB0.28710GNRAA SSU rRNAU296G297A298G299A300G301cWWntSH
227 HL_3RG5_0073RG50.30730GNRABSelenocysteine transfer RNAU47|||CU47|||DA47|||EG47|||FC47|||GG47|||HcWWntSHa
228 HL_6CZR_0786CZR0.24110GNRA1a SSU rRNAU292G293A294G295A296G297cWWntSH
229 HL_6CZR_0906CZR0.27900GNRA1a SSU rRNAC840U841A842A843C844G845cWWntSH
230 HL_5J7L_0195J7L0.22030GNRAAA SSU rRNAC862U863A864A865C866G867cWWntSH
231 HL_4LFB_0194LFB0.20500GNRAA SSU rRNAC862U863A864A865C866G867cWWntSH
232 HL_3PDR_0013PDR0.18070GNRAXM-box riboswitch (ykoK leader)C68C69A70A71A72G73cWWntSH
233 HL_5TBW_0475TBW0.23201GNRA1 LSU rRNAA2164G2165A2166A2167A2168U2170cWWntSH
234 HL_6JDV_0016JDV0.24420GNRABsgRNAG48G49A50A51A52C53cWW
235 HL_3D0U_0043D0U0.22160GNRAALysine Riboswitch RNAC142G143A144A145A146G147cWWntSH
236 HL_6CZR_0986CZR0.29390GNRA1a SSU rRNAC1148G1149A1150A1151A1152G1153cWWntSH
237 HL_4LFB_0224LFB0.33340GNRAA SSU rRNAU1012G1013A1014A1015A1016G1017cWWntSH
238 HL_4V9F_0364V9F0.47791GNRA variation0 LSU rRNAG1468C1469A1470A1471C1472C1474cWWtSHa
239 HL_7A0S_0057A0S0.35590GNRAX LSU rRNAC146G147C148A149A150G151cWWntSH
240 HL_4V88_1884V880.53981Other HLA6 SSU rRNAG154U155A156A157U158C160cWW
241 HL_1U6B_0041U6B0.45140GNRA relatedB197-MERC153A154A155A156C157G158cWW
242 HL_4QK9_0014QK90.44950Other HLAC-di-AMP riboswitchC14U15G16A17A18G19cWW
243 HL_5TBW_0335TBW0.44580GNRA related1 LSU rRNAG1544A1545A1546G1547C1548U1549cWW
244 HL_4V88_2224V880.55120Other HLA6 SSU rRNAG1778U1779G1780A1781A1782C1783cWW
245 HL_7A0S_0347A0S0.61730GNRA variationX LSU rRNAC1376G1377A1378A1379C1380G1381cWW
246 HL_7RQB_0357RQB0.47390GNRA1A LSU rRNAC1363G1364A1365A1366A1367G1368cWW
247 HL_5J7L_1675J7L0.47860GNRADA LSU rRNAC1363G1364A1365A1366A1367G1368cWW
248 HL_4WF9_0344WF90.51720GNRA relatedX LSU rRNAC1400G1401A1402C1403A1404G1405cWW
249 HL_4KQY_0024KQY0.42640GNRAA SAM-I riboswitchC60G61A62A63A64G65ncWWntSH
250 HL_4V88_2004V880.62520Other HLA6 SSU rRNAC569A570G571C572C573G574cWW
251 HL_4V88_2184V880.56320GNRAA6 SSU rRNAC1501G1502A1503G1504A1505G1506cWWntSH
252 HL_6AZ4_0016AZ40.54420GNRAARNA (32-MER)U20G21A22A23A24G25cWWntSH
253 HL_6CB3_0046CB30.56140GNRABRNA (99-MER)G20G21A22A23A24C25cWWntSH
254 HL_1M5K_0031M5K0.60700GNRABRNA HAIRPIN RIBOZYMEG74G75A76A77A78C79cWWntSH
255 HL_4QLM_0014QLM0.75860GNRAA cyclic di-AMP riboswitchC54G55A56A57A58G59cWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAAG64
GGAAAC36
CGCAAG15
CGAGAG14
CGUGAG12
UGAAAG11
UGAAAA10
AGAAAU9
CGCGAG6
CGAAGG5
CGUAAG5
CGGAAG4
GGUAAC4
GGGAGC3
GGCGAC3
AGUGAU3
GGUGAC3
CGGGAG3
UGAGAG3
CUAACG3
UGUGAA2
UGCAAG2
GGCAAC2
GGAGAC2
GGUAAGC2
ACCUUU1
UUCAAG1
CUUCGG1
UGUGAG1
CGUAGG1
CGCAGG1
UGACGG1
AGCGAU1
AGCAAU1
AAAAAU1
AGCUAACU1
CGAUAACG1
UGAUAAGG1
CUCACG1
CGGAACG1
UGAGAA1
CGAAAUG1
UUAGCG1
CCAAAG1
AGAAAGU1
GCAACUC1
GUAAUUC1
CAAACG1
CUGAAG1
GAAGCU1
GUGAAC1
CGAACG1
CGACAG1
CAGCCG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA130
GUGA21
GCAA20
GAGA20
GCGA10
GUAA9
GAAG5
GGAA4
GGAG3
GGGA3
UAAC3
GUAAG2
UGAA2
CCUU1
UCAA1
UUCG1
GUAG1
GCAG1
GACG1
AAAA1
GCUAAC1
GAUAAC1
GAUAAG1
UCAC1
GGAAC1
GAAAU1
UAGC1
CAAA1
GAAAG1
CAACU1
UAAUU1
AAAC1
AAGC1
GAAC1
GACA1
AGCC1

Release history

Release3.673.683.693.703.713.723.733.743.753.76
Date2023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-08
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • GNRA (214)
  • Other HL (29)
  • GNRA related (4)
  • GNRA variation (4)
  • GNRA with GA tSW pair (4)
  • Basepair signature
    cWW-tSH-R-R
    Heat map statistics
    Min 0.04 | Avg 0.37 | Max 0.99
    Help

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