Motif HL_33239.14 Version HL_33239.14 of this group appears in releases 3.48 to 3.53

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-6
1	HL_4FRN_005	4FRN	0.7791	0	T-loop with 2 bulged bases not stacked	B	Cobalamin riboswitch aptamer domain	G	28	U	29	G	30	U	31	A	32	A	33	U	34	U	35	C	36	cWW	tWH
2	HL_4FRG_001	4FRG	0.7563	0	T-loop with 2 bulged bases not stacked	B	cobalamin riboswitch aptamer domain	G	28	U	29	G	30	A	31	A	32	A	33	U	34	U	35	C	36	cWW	tWH
3	HL_6DN2_003	6DN2	0.7696	0	T-loop with 2 bulged bases not stacked	Y	RNA (56-MER)	G	68	U	69	G	70	A	71	A	72	A	73	U	74	U	75	C	76	cWW	tWH
4	HL_5C45_003	5C45	0.7864	0	T-loop with 2 bulged bases not stacked	Y	FMN Riboswitch	G	68	U	69	G	70	A	71	A	72	A	73	U	74	U	75	C	76	cWW	tWH
5	HL_6DN2_001	6DN2	0.7665	0	T-loop with 2 bulged bases not stacked	X	RNA RIBOSWITCH	G	17	U	18	G	19	A	20	A	21	A	22	U	23	U	24	C	25	cWW	tWH
6	HL_5C45_001	5C45	0.7534	0	T-loop with 2 bulged bases not stacked	X	FMN Riboswitch	G	17	U	18	G	19	A	20	A	21	A	22	U	23	U	24	C	25	cWW	tWH
7	HL_3F2X_001	3F2X	0.7369	0	T-loop with 2 bulged bases not stacked	X	FMN riboswitch	G	17	U	18	G	19	A	20	A	21	A	22	U	23	U	24	C	25	cWW	tWH
8	HL_3F2X_004	3F2X	0.7625	0	T-loop with 2 bulged bases not stacked	X	FMN riboswitch	G	68	U	69	G	70	A	71	A	72	A	73	U	74	U	75	C	76	cWW	tWH
9	HL_3VJR_001	3VJR	0.5816	0	T-loop with 2 bulged bases not stacked	B	tRNA CCA-acceptor	G	13	U	14	U	15	C	16	G	17	A	18	U	19	C	20	C	21	cWW	tWH
10	HL_5T5A_001	5T5A	0.4300	0	T-loop with 2 stacked bulged bases	A	DNA/RNA (71-MER)	G	21	U	22	G	23	C	24	A	25	A	26	G	27	C	28	C	29	cWW	tWH
11	HL_7A0S_032	7A0S	0.4011	0	T-loop with 2 stacked bulged bases	X	LSU rRNA	G	1294	U	1295	G	1296	A	1297	G	1298	A	1299	A	1300	U	1301	C	1302	cWW	tWH
12	HL_4Y4O_134	4Y4O	0.3963	0	T-loop with 2 stacked bulged bases	2A	LSU rRNA	G	1281	U	1282	G	1283	A	1284	G	1285	A	1286	A	1287	U	1288	C	1289	cWW	tWH
13	HL_4WF9_032	4WF9	0.4326	0	T-loop with 2 stacked bulged bases	X	LSU rRNA	G	1318	U	1319	G	1320	A	1321	G	1322	A	1323	A	1324	U	1325	C	1326	cWW	tWH
14	HL_4V9F_034	4V9F	0.4520	0	T-loop with 2 stacked bulged bases	0	LSU rRNA	G	1387	U	1388	G	1389	A	1390	G	1391	A	1392	A	1393	C	1394	C	1395	cWW	tWH
15	HL_5TBW_031	5TBW	0.4279	0	T-loop with 2 stacked bulged bases	1	LSU rRNA	A	1462	U	1463	G	1464	A	1465	G	1466	A	1467	A	1468	C	1469	U	1470	cWW	tWH
16	HL_5J7L_165	5J7L	0.4239	0	T-loop with 2 stacked bulged bases	DA	LSU rRNA	G	1281	U	1282	G	1283	A	1284	A	1285	A	1286	A	1287	G	1288	C	1289	cWW	tWH
17	HL_6CU1_001	6CU1	0.3759	0	T-loop with 2 stacked bulged bases	A	Y RNA-like	G	24	U	25	U	26	C	27	G	28	A	29	G	30	A	31	C	32	cWW	tWH
18	HL_4V9K_035	4V9K	0.3794	0	T-loop with 2 stacked bulged bases	AW	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
19	HL_4QEI_003	4QEI	0.4102	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
20	HL_4QEI_006	4QEI	0.4102	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53\|\|\|\|2_555	U	54\|\|\|\|2_555	U	55\|\|\|\|2_555	C	56\|\|\|\|2_555	G	57\|\|\|\|2_555	A	58\|\|\|\|2_555	U	59\|\|\|\|2_555	U	60\|\|\|\|2_555	C	61\|\|\|\|2_555	cWW
21	HL_5E6M_003	5E6M	0.4134	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
22	HL_4V90_034	4V90	0.3623	0	T-loop with 2 stacked bulged bases	AV	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
23	HL_2ZNI_003	2ZNI	0.4413	0	T-loop with 2 stacked bulged bases	C	bacterial tRNA	G	53	U	54	G	55	A	56	A	57	A	58	C	59	U	60	C	61	cWW	tWH
24	HL_4WF9_018	4WF9	0.2951	1	T-loop with 2 stacked bulged bases	X	LSU rRNA	U	609	U	610	U	611	U	612	G	613	U	614	A	615	G	616	A	618	cWW
25	HL_5J7L_150	5J7L	0.2813	1	T-loop with 2 stacked bulged bases	DA	LSU rRNA	U	566	U	567	U	568	U	569	G	570	U	571	A	572	U	573	A	575	cWW
26	HL_7A0S_018	7A0S	0.3385	1	T-loop with 2 stacked bulged bases	X	LSU rRNA	U	575	A	576	U	577	U	578	G	579	A	580	A	581	G	582	A	584	cWW
27	HL_4Y4O_120	4Y4O	0.3521	1	T-loop with 2 stacked bulged bases	2A	LSU rRNA	U	566	A	567	U	568	U	569	G	570	A	571	A	572	G	573	A	575	cWW
28	HL_5TBW_014	5TBW	0.3194	1	T-loop with 2 stacked bulged bases	1	LSU rRNA	U	640	C	641	U	642	U	643	G	644	A	645	A	646	A	647	A	649	cWW
29	HL_4V8N_145	4V8N	0.2489	0	T-loop with 2 stacked bulged bases	CV	tRNA	G	55	U	56	U	57	C	58	G	59	A	60	A	61	U	62	C	63	cWW	tWH
30	HL_5Y85_003	5Y85	0.2815	0	T-loop with 2 stacked bulged bases	D	DNA/RNA (50-MER)	G	11	U	12	G	13	C	14	A	15	A	16	G	17	U	18	C	19	cWW	tWH
31	HL_6MJ0_009	6MJ0	0.1860	0	T-loop with 2 stacked bulged bases	B	tRNA-like 3' UTR element	G	66	U	67	G	68	C	69	A	70	A	71	C	72	U	73	C	74	cWW	tWH
32	HL_4V8Q_110	4V8Q	0.2242	0	T-loop with 2 stacked bulged bases	BY	SsrA	G	66	U	67	U	68	C	69	G	70	A	71	C	72	U	73	C	74	cWW	ntWH
33	HL_3ICQ_005	3ICQ	0.2507	0	T-loop with 2 stacked bulged bases	E	RNA (62-MER)	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
34	HL_3WFS_003	3WFS	0.1676	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
35	HL_3AMU_003	3AMU	0.1702	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
36	HL_1U0B_003	1U0B	0.1606	0	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
37	HL_4GCW_002	4GCW	0.1457	0	T-loop with 2 stacked bulged bases	B	TRNA(THR)	G	53	U	54	U	55	C	56	G	57	A	58	G	59	C	60	C	61	cWW	tWH
38	HL_4GCW_004	4GCW	0.1457	0	T-loop with 2 stacked bulged bases	B	TRNA(THR)	G	53\|\|\|\|2_556	U	54\|\|\|\|2_556	U	55\|\|\|\|2_556	C	56\|\|\|\|2_556	G	57\|\|\|\|2_556	A	58\|\|\|\|2_556	G	59\|\|\|\|2_556	C	60\|\|\|\|2_556	C	61\|\|\|\|2_556	cWW	tWH
39	HL_5B63_004	5B63	0.1492	0	T-loop with 2 stacked bulged bases	D	tRNA	G	954	U	955	U	956	C	957	G	958	A	959	A	960	U	961	C	962	cWW	tWH
40	HL_4WT8_217	4WT8	0.1519	0	T-loop with 2 stacked bulged bases	D4	tRNA	G	54	U	55	U	56	C	57	A	58	A	59	A	60	U	61	C	62	cWW	tWH
41	HL_2AZX_006	2AZX	0.1533	0	T-loop with 2 stacked bulged bases	D	72-MER	G	553	U	554	U	555	C	556	G	557	A	558	A	559	U	560	C	561	ncWW	tWH
42	HL_2AZX_009	2AZX	0.1533	0	T-loop with 2 stacked bulged bases	D	72-MER	G	553\|\|\|\|6_555	U	554\|\|\|\|6_555	U	555\|\|\|\|6_555	C	556\|\|\|\|6_555	G	557\|\|\|\|6_555	A	558\|\|\|\|6_555	A	559\|\|\|\|6_555	U	560\|\|\|\|6_555	C	561\|\|\|\|6_555	ncWW	tWH
43	HL_4WJ4_003	4WJ4	0.1353	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
44	HL_4WJ4_006	4WJ4	0.1353	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53\|\|\|\|5_455	U	54\|\|\|\|5_455	U	55\|\|\|\|5_455	C	56\|\|\|\|5_455	G	57\|\|\|\|5_455	A	58\|\|\|\|5_455	G	59\|\|\|\|5_455	U	60\|\|\|\|5_455	C	61\|\|\|\|5_455	cWW	tWH
45	HL_6UFM_003	6UFM	0.1339	0	T-loop with 2 stacked bulged bases	A	tRNA	G	54	U	55	U	56	C	57	G	58	A	59	G	60	U	61	C	62	cWW	tWH
46	HL_3AL0_003	3AL0	0.1394	0	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
47	HL_6PMO_005	6PMO	0.1117	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
48	HL_1QTQ_003	1QTQ	0.1155	0	T-loop with 2 stacked bulged bases	B	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
49	HL_5HR6_003	5HR6	0.1003	0	T-loop with 2 stacked bulged bases	C	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
50	HL_5HR7_006	5HR7	0.1149	0	T-loop with 2 stacked bulged bases	D	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
51	HL_4JXZ_003	4JXZ	0.1113	0	T-loop with 2 stacked bulged bases	B	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
52	HL_5AXM_003	5AXM	0.0770	0	T-loop with 2 stacked bulged bases	P	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
53	HL_5AXM_006	5AXM	0.0770	0	T-loop with 2 stacked bulged bases	P	tRNA	G	53\|\|\|\|2_555	U	54\|\|\|\|2_555	U	55\|\|\|\|2_555	C	56\|\|\|\|2_555	G	57\|\|\|\|2_555	A	58\|\|\|\|2_555	U	59\|\|\|\|2_555	C	60\|\|\|\|2_555	C	61\|\|\|\|2_555	cWW	tWH
54	HL_4YCO_003	4YCO	0.0000	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
55	HL_3ZGZ_003	3ZGZ	0.0773	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
56	HL_4YYE_003	4YYE	0.0835	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
57	HL_4RDX_006	4RDX	0.1145	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53\|\|\|\|4_577	U	54\|\|\|\|4_577	U	55\|\|\|\|4_577	C	56\|\|\|\|4_577	A	57\|\|\|\|4_577	A	58\|\|\|\|4_577	G	59\|\|\|\|4_577	U	60\|\|\|\|4_577	C	61\|\|\|\|4_577	cWW	tWH
58	HL_4RDX_003	4RDX	0.1145	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
59	HL_2ZUE_003	2ZUE	0.1058	0	T-loop with 2 stacked bulged bases	B	tRNA-Arg	G	953	U	954	U	955	C	956	A	957	A	958	A	959	U	960	C	961	cWW	tWH
60	HL_1J1U_006	1J1U	0.0828	0	T-loop with 2 stacked bulged bases	B	tRNA(Tyr)	G	554\|\|\|\|4_556	U	555\|\|\|\|4_556	U	556\|\|\|\|4_556	C	557\|\|\|\|4_556	A	558\|\|\|\|4_556	A	559\|\|\|\|4_556	A	560\|\|\|\|4_556	U	561\|\|\|\|4_556	C	562\|\|\|\|4_556	cWW	tWH
61	HL_1J1U_003	1J1U	0.0828	0	T-loop with 2 stacked bulged bases	B	tRNA(Tyr)	G	554	U	555	U	556	C	557	A	558	A	559	A	560	U	561	C	562	cWW	tWH
62	HL_2ZZN_006	2ZZN	0.1199	0	T-loop with 2 stacked bulged bases	D	RNA (71-MER)	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
63	HL_3WQY_003	3WQY	0.1212	0	T-loop with 2 stacked bulged bases	C	tRNA	G	1653	U	1654	U	1655	C	1656	A	1657	A	1658	A	1659	U	1660	C	1661	cWW	tWH
64	HL_5X6B_003	5X6B	0.1127	0	T-loop with 2 stacked bulged bases	P	tRNA	G	52	U	53	U	54	C	55	A	56	A	57	A	58	U	59	C	60	cWW	tWH
65	HL_2ZZM_004	2ZZM	0.1199	0	T-loop with 2 stacked bulged bases	B	RNA (84-MER)	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
66	HL_4TUE_035	4TUE	0.1423	0	T-loop with 2 stacked bulged bases	QV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	ncWW	tWH
67	HL_5WT1_003	5WT1	0.1304	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
68	HL_1QU2_003	1QU2	0.1021	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
69	HL_2BTE_004	2BTE	0.1700	0	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
70	HL_5AH5_008	5AH5	0.1347	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
71	HL_4V9Q_215	4V9Q	0.1604	0	T-loop with 2 stacked bulged bases	DV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
72	HL_1WZ2_008	1WZ2	0.1730	0	T-loop with 2 stacked bulged bases	D	tRNA	G	965	U	966	U	967	C	968	G	969	A	970	A	971	U	972	C	973	cWW	tWH
73	HL_4ZDO_004	4ZDO	0.1435	0	T-loop with 2 stacked bulged bases	E	Selenocysteine transfer RNA	G	53\|\|A	U	54\|\|A	U	55\|\|A	C	56\|\|A	A	57\|\|A	A	58\|\|A	U	59\|\|A	U	60\|\|A	C	61\|\|A	cWW	tWH
74	HL_4P5J_003	4P5J	0.1407	0	T-loop with 2 stacked bulged bases	A	tRNA-like 3' UTR element	G	46	U	47	G	48	C	49	A	50	A	51	C	52	U	53	C	54	cWW	tWH
75	HL_5UD5_003	5UD5	0.2108	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	A	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
76	HL_2D6F_006	2D6F	0.1806	0	T-loop with 2 stacked bulged bases	F	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	C	959	U	960	C	961	cWW	tWH
77	HL_6JXM_003	6JXM	0.1303	0	T-loop with 2 stacked bulged bases	B	tRNA	G	74	U	75	U	76	C	77	G	78	A	79	G	80	U	81	C	82	cWW	tWH
78	HL_4LCK_003	4LCK	0.1439	0	T-loop with 2 stacked bulged bases	B	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
79	HL_4MGN_004	4MGN	0.1811	0	T-loop with 2 stacked bulged bases	B	tRNA-glycine	G	52	U	53	U	54	C	55	G	56	A	57	G	58	U	59	C	60	cWW	tWH
80	HL_2DU3_003	2DU3	0.1660	0	T-loop with 2 stacked bulged bases	D	tRNA	G	952	U	953	U	954	C	955	G	956	A	957	A	958	U	959	C	960	cWW	tWH
81	HL_2DU3_006	2DU3	0.1660	0	T-loop with 2 stacked bulged bases	D	tRNA	G	952\|\|\|\|4_555	U	953\|\|\|\|4_555	U	954\|\|\|\|4_555	C	955\|\|\|\|4_555	G	956\|\|\|\|4_555	A	957\|\|\|\|4_555	A	958\|\|\|\|4_555	U	959\|\|\|\|4_555	C	960\|\|\|\|4_555	cWW	tWH
82	HL_4X4V_001	4X4V	0.1750	0	T-loop with 2 stacked bulged bases	B	Human MenBeta minihelix ending in CCACC	G	12	U	13	U	14	C	15	G	16	A	17	G	18	U	19	C	20	cWW	tWH
83	HL_5WWT_002	5WWT	0.2089	0	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
84	HL_3ADD_004	3ADD	0.2117	0	T-loop with 2 stacked bulged bases	C	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	A	57	A	58	U	59	U	60	C	61	cWW	tWH
85	HL_3W3S_008	3W3S	0.1781	0	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53\|\|\|\|43_455	U	54\|\|\|\|43_455	U	55\|\|\|\|43_455	C	56\|\|\|\|43_455	G	57\|\|\|\|43_455	A	58\|\|\|\|43_455	U	59\|\|\|\|43_455	U	60\|\|\|\|43_455	C	61\|\|\|\|43_455	cWW	tWH
86	HL_3W3S_004	3W3S	0.1781	0	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
87	HL_3RG5_012	3RG5	0.1528	0	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53\|\|\|\|1_556	U	54\|\|\|\|1_556	U	55\|\|\|\|1_556	C	56\|\|\|\|1_556	A	57\|\|\|\|1_556	A	58\|\|\|\|1_556	U	59\|\|\|\|1_556	U	60\|\|\|\|1_556	C	61\|\|\|\|1_556	cWW	tWH
88	HL_3RG5_008	3RG5	0.1528	0	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	A	57	A	58	U	59	U	60	C	61	cWW	tWH
89	HL_3FOZ_006	3FOZ	0.2331	0	T-loop with 2 stacked bulged bases	D	tRNA(Phe)	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
90	HL_3AM1_008	3AM1	0.2550	0	T-loop with 2 stacked bulged bases	B	ASL-truncated tRNA	G	59\|\|\|\|5_555	U	60\|\|\|\|5_555	U	61\|\|\|\|5_555	C	62\|\|\|\|5_555	G	63\|\|\|\|5_555	A	64\|\|\|\|5_555	U	65\|\|\|\|5_555	U	66\|\|\|\|5_555	C	67\|\|\|\|5_555	cWW	tWH
91	HL_3AM1_004	3AM1	0.2550	0	T-loop with 2 stacked bulged bases	B	ASL-truncated tRNA	G	59	U	60	U	61	C	62	G	63	A	64	U	65	U	66	C	67	cWW	tWH
92	HL_2DER_006	2DER	0.2227	0	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
93	HL_3TUP_003	3TUP	0.2182	0	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	ntWH
94	HL_3EPH_003	3EPH	0.1974	0	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
95	HL_1N78_003	1N78	0.1710	0	T-loop with 2 stacked bulged bases	C	tRNA(Glu)	G	553	U	554	U	555	C	556	G	557	A	558	U	559	U	560	C	561	cWW	tWH
96	HL_3IGI_001	3IGI	0.2705	0	T-loop with 2 stacked bulged bases	A	Group IIC intron	G	30	U	31	G	32	A	33	G	34	A	35	G	36	U	37	C	38	cWW	tWH
97	HL_6JQ5_003	6JQ5	0.3033	0	T-loop with 2 stacked bulged bases	B	Hatchet ribozyme	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
98	HL_6JQ5_001	6JQ5	0.3122	0	T-loop with 2 stacked bulged bases	A	Hatchet ribozyme	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
99	HL_6JQ6_001	6JQ6	0.2973	0	T-loop with 2 stacked bulged bases	U	Hatchet ribozyme	G	6\|\|\|\|11_555	U	7\|\|\|\|11_555	G	8\|\|\|\|11_555	A	9\|\|\|\|11_555	G	10\|\|\|\|11_555	A	11\|\|\|\|11_555	A	12\|\|\|\|11_555	U	13\|\|\|\|11_555	C	14\|\|\|\|11_555	cWW	tWH
100	HL_6JQ6_003	6JQ6	0.2973	0	T-loop with 2 stacked bulged bases	U	Hatchet ribozyme	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
101	HL_4GXY_002	4GXY	0.3920	0	T-loop with 2 stacked bulged bases	A	Adenosylcobalamin riboswitch	G	49	U	50	G	51	C	52	A	53	A	54	G	55	U	56	C	57	cWW	tWH
102	HL_6NWY_035	6NWY	0.3469	0	T-loop with 2 stacked bulged bases	QV	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
103	HL_6UFG_008	6UFG	0.4468	0	T-loop with 2 stacked bulged bases	B	tRNA	G	54	U	55	U	56	C	57	A	58	A	59	G	60	U	61	C	62	cWW	tWH
104	HL_1J2B_002	1J2B	0.4065	0	T-loop with 2 stacked bulged bases	C	tRNA(Val)	G	954	U	955	U	956	C	957	A	958	A	959	G	960	U	961	C	962	cWW	tWH
105	HL_2CSX_003	2CSX	0.3315	0	T-loop with 2 stacked bulged bases	C	RNA (75-MER)	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
106	HL_1GAX_006	1GAX	0.4009	0	T-loop with 2 stacked bulged bases	D	TRNA(VAL)	G	952	U	953	U	954	C	955	A	956	A	957	G	958	U	959	C	960	cWW	tWH
107	HL_2DRA_001	2DRA	0.3794	0	T-loop with 2 stacked bulged bases	B	tRNA (34-MER)	G	12	U	13	U	14	C	15	G	16	A	17	U	18	U	19	C	20	cWW	tWH
108	HL_3OVB_001	3OVB	0.4396	0	T-loop with 2 stacked bulged bases	C	RNA (35-MER)	G	12	U	13	U	14	C	15	A	16	A	17	G	18	U	19	C	20	cWW	tWH

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUCGAAUC	17
GUUCGAUUC	14
GUUCAAAUC	13
GUUCAAGUC	10
GUUCGAGUC	8
GUGAAAUUC	7
GUGAGAAUC	7
GUUCGAUCC	5
GUUCAAUUC	4
GUUCGACUC	3
UAUUGAAGCA	2
GUGCAAGUC	2
GUGCAACUC	2
GUUCGAGCC	2
GUGUAAUUC	1
GUGCAAGCC	1
GUGAGAACC	1
AUGAGAACU	1
GUGAAAAGC	1
GUUCGAGAC	1
GUGAAACUC	1
UUUUGUAGAA	1
UUUUGUAUAA	1
UCUUGAAACA	1
GUUAGAUUC	1
GUGAGAGUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCGAAU	17
UUCGAUU	14
UUCAAAU	13
UUCAAGU	10
UUCGAGU	8
UGAAAUU	7
UGAGAAU	7
UUCGAUC	5
UUCAAUU	4
UUCGACU	3
UGAGAAC	2
AUUGAAGC	2
UGCAAGU	2
UGCAACU	2
UUCGAGC	2
UGUAAUU	1
UGCAAGC	1
UGAAAAG	1
UUCGAGA	1
UGAAACU	1
UUUGUAGA	1
UUUGUAUA	1
CUUGAAAC	1
UUAGAUU	1
UGAGAGU	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: T-loop with 2 stacked bulged bases (99)
T-loop with 2 bulged bases not stacked (9)
Basepair signature: cWW-R-R-tWH-R-R-R
Heat map statistics: Min 0.05 | Avg 0.38 | Max 0.94

Help

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__280729904117527__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__280729904117527__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://rna.bgsu.edu/rna3dhub/motif/view/HL_33239.14","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__280729904117527__","codePath":"https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"280729904117527","bgcolor":"white" }

setting document base to "https://rna.bgsu.edu/rna3dhub/motif/view/HL_33239.14"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__280729904117527__ ready

script 1 started

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

Script completed

Jmol script terminated

script 2 started

Script completed

Jmol script terminated

script 3 started

Script completed

Jmol script terminated

script 4 started

Script completed

Jmol script terminated

Coloring options: Nucleotide numbers

Motif HL_33239.14 Version HL_33239.14 of this group appears in releases 3.48 to 3.53 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_33239.14 Version HL_33239.14 of this group appears in releases 3.48 to 3.53

Download

Csv

Json