RNA 3D Hub //

6RBE Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6RBE_0021/2/70:81No text annotation
Not in a motif group		homologous
HL_4V88_187
HL_40069.1
HL_6RBE_0031/2/154:160Other HL
Not in a motif group		homologous
HL_4V88_188
HL_76539.2
HL_6RBE_0041/2/190:195No text annotation
Not in a motif group		homologous
HL_4V88_189
HL_77805.2
HL_6RBE_0061/2/243:250T-loop with 1 bulged base
Not in a motif group		homologous
HL_4V88_191
HL_27930.1
HL_6RBE_0071/2/276:279No text annotation
Not in a motif group		geometric
HL_4WF9_037
HL_94803.1
HL_6RBE_0081/2/330:338No text annotation
Not in a motif group		homologous
HL_4V88_193
HL_69023.2
HL_6RBE_0091/2/368:373No text annotation
Not in a motif group		homologous
HL_4V88_194
HL_50142.2
HL_6RBE_0101/2/393:404No text annotation
Not in a motif group		homologous
HL_4V88_195
HL_84288.1
HL_6RBE_0111/2/414:419UNCG
Not in a motif group		homologous
HL_4V88_196
HL_03562.2
HL_6RBE_0121/2/450:456No text annotation
Not in a motif group		homologous
HL_4V88_197
HL_09136.1
HL_6RBE_0141/2/520:532No text annotation
Not in a motif group		geometric
HL_4V88_199
HL_06285.2
HL_6RBE_0211/2/937:942Other HL
Not in a motif group		homologous
HL_4V88_207
HL_87030.2
HL_6RBE_0231/2/1055:1064No text annotation
Not in a motif group
HL_6RBE_0241/2/1084:1089Other HL
Not in a motif group		homologous
HL_4V88_210
HL_42097.1
HL_6RBE_0341/2/1594:1602No text annotation
Not in a motif group		homologous
HL_4V88_220
HL_60812.1

Problematic loops

#loop idProblemSequence
HL_6RBE_001No text annotation
HL_6RBE_005UNCG
HL_6RBE_013No text annotation
HL_6RBE_015Other HL
HL_6RBE_016No text annotation
HL_6RBE_017No text annotation
HL_6RBE_018No text annotation
HL_6RBE_019No text annotation
HL_6RBE_020No text annotation
HL_6RBE_022No text annotation
HL_6RBE_025GNRA
HL_6RBE_026No text annotation
HL_6RBE_027No text annotation
HL_6RBE_028GNRA
HL_6RBE_029No text annotation
HL_6RBE_030No text annotation
HL_6RBE_031No text annotation
HL_6RBE_032GNRA
HL_6RBE_033No text annotation
HL_6RBE_035No text annotation
HL_6RBE_036Other HL

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6RBE_0011/2/24:26,
1/2/600:601		Single bulged C
Not in a motif group		homologous
IL_4V88_384
IL_61258.12
IL_6RBE_0021/2/35:37,
1/2/471:473		UC cWW
Not in a motif group		homologous
IL_4V88_385
IL_51629.2
IL_6RBE_0031/2/42:48,
1/2/431:433		No text annotation
Not in a motif group		homologous
IL_4V88_387
IL_33912.1
IL_6RBE_0041/2/50:52,
1/2/428:429		Minor groove platform
Not in a motif group		homologous
IL_4V88_388
IL_93353.1
IL_6RBE_0051/2/58:63,
1/2/87:89		No text annotation
Not in a motif group		homologous
IL_4V88_389
IL_95004.1
IL_6RBE_0061/2/64:69,
1/2/82:86		No text annotation
Not in a motif group		homologous
IL_4V88_390
IL_77691.1
IL_6RBE_0071/2/109:112,
1/2/302:305		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_391
IL_30621.2
IL_6RBE_0081/2/113:116,
1/2/300:301		Multiple bulged bases
Not in a motif group		homologous
IL_4V88_392
IL_44546.1
IL_6RBE_0091/2/117:122,
1/2/295:299		No text annotation
Not in a motif group		homologous
IL_4V88_393
IL_64181.2
IL_6RBE_0101/2/143:149,
1/2/165:172		tWH-tWH-tHW-tHW
Not in a motif group		homologous
IL_4V88_394
IL_80604.2
IL_6RBE_0111/2/150:152,
1/2/162:164		Isolated cWH basepair
Not in a motif group		geometric
IL_4KQ0_004
IL_51629.2
IL_6RBE_0121/2/186:189,
1/2/196:199		Double sheared
Not in a motif group		homologous
IL_4V88_396
IL_09705.9
IL_6RBE_0131/2/204:206,
1/2/259:263		Major groove platform with extra cWW
Not in a motif group		geometric
IL_4V88_397
IL_05564.2
IL_6RBE_0141/2/206:208,
1/2/257:259		No text annotation
Not in a motif group		homologous
IL_4V88_398
IL_95997.1
IL_6RBE_0161/2/265:267,
1/2/288:289		Single bulged A
Not in a motif group		homologous
IL_4V88_399
IL_37497.2
IL_6RBE_0171/2/270:273,
1/2/283:285		No text annotation
Not in a motif group		homologous
IL_4V88_400
IL_47298.1
IL_6RBE_0181/2/275:276,
1/2/279:281		Single bulged U
Not in a motif group		homologous
IL_4V88_401
IL_83039.13
IL_6RBE_0191/2/311:316,
1/2/348:355		Kink-turn with non-sequential stacking
Not in a motif group		homologous
IL_4V88_402
IL_45067.2
IL_6RBE_0201/2/318:323,
1/2/345:346		No text annotation
Not in a motif group		homologous
IL_4V88_403
IL_48100.2
IL_6RBE_0221/2/389:391,
1/2/406:408		Isolated cWH basepair
Not in a motif group		homologous
IL_4V88_405
IL_51629.2
IL_6RBE_0231/2/411:413,
1/2/420:422		Isolated near basepair
Not in a motif group		homologous
IL_4V88_406
IL_52767.2
IL_6RBE_0241/2/439:441,
1/2/463:464		Single bulged U
Not in a motif group		homologous
IL_4V88_407
IL_83039.13
IL_6RBE_0251/2/443:447,
1/2/460:461		C-loop
Not in a motif group		geometric
IL_5J7L_018
IL_75255.1
IL_6RBE_0261/2/447:448,
1/2/458:460		Single bulged G
Not in a motif group		geometric
IL_5J7L_019
IL_00225.2
IL_6RBE_0271/2/480:484,
1/2/503:508		No text annotation
Not in a motif group
IL_6RBE_0281/2/517:518,
1/2/533:535		Minor groove platform
Not in a motif group		geometric
IL_4UYK_001
IL_93353.1
IL_6RBE_0291/2/518:520,
1/2/532:533		Minor groove platform
Not in a motif group		geometric
IL_4V88_412
IL_93353.1
IL_6RBE_0331/2/616:622,
1/2/1104:1105		No text annotation
Not in a motif group		homologous
IL_4V88_416
IL_69996.1
IL_6RBE_0341/2/624:626,
1/2/973:975		No text annotation
Not in a motif group		homologous
IL_4V88_417
IL_95997.1
IL_6RBE_0351/2/627:631,
1/2/968:972		tSH-tHW-tHS
Not in a motif group		homologous
IL_4V88_418
IL_17136.1
IL_6RBE_0411/2/865:866,
1/2/962:965		Major groove platform; stack outside cWW
Not in a motif group		homologous
IL_4V88_428
IL_50694.2
IL_6RBE_0421/2/867:870,
1/2/957:961		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_429
IL_30621.2
IL_6RBE_0431/2/871:874,
1/2/953:956		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_430
IL_30621.2
IL_6RBE_0441/2/874:878,
1/2/950:953		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_4V88_431
IL_30621.2
IL_6RBE_0451/2/886:888,
1/2/924:926		No text annotation
Not in a motif group		geometric
IL_3HHN_004
IL_95997.1
IL_6RBE_0481/2/1034:1036,
1/2/1095:1101		No text annotation
Not in a motif group		homologous
IL_4V88_437
IL_19557.3
IL_6RBE_0491/2/1041:1044,
1/2/1074:1077		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_438
IL_30621.2
IL_6RBE_0501/2/1051:1053,
1/2/1066:1067		Single bulged U
Not in a motif group		homologous
IL_4V88_439
IL_83039.13
IL_6RBE_0531/2/1157:1160,
1/2/1617:1621		C-loop
Not in a motif group		homologous
IL_4V88_443
IL_63596.6
IL_6RBE_0541/2/1173:1175,
1/2/1464:1466		No text annotation
Not in a motif group		homologous
IL_4V88_444
IL_95997.1
IL_6RBE_0551/2/1178:1179,
1/2/1459:1461		Minor groove platform
Not in a motif group		homologous
IL_4V88_445
IL_42622.2

Problematic loops

#loop idProblemSequence
IL_6RBE_015No text annotation
IL_6RBE_021No text annotation
IL_6RBE_030SSU/LSU pseudoknot
IL_6RBE_031Single bulged U
IL_6RBE_032No text annotation
IL_6RBE_036No text annotation
IL_6RBE_037No text annotation
IL_6RBE_038Major groove minor groove platform with extra cWW
IL_6RBE_039No text annotation
IL_6RBE_040No text annotation
IL_6RBE_046Other IL
IL_6RBE_047tSH-tHW-tHS
IL_6RBE_0518x6 Sarcin-Ricin with inserted Y; G-bulge
IL_6RBE_052Single bulged G
IL_6RBE_056No text annotation
IL_6RBE_057No text annotation
IL_6RBE_058No text annotation
IL_6RBE_059No text annotation
IL_6RBE_060Single bulged U
IL_6RBE_061No text annotation
IL_6RBE_062Minor groove platform with extra cWW
IL_6RBE_063Single bulged A
IL_6RBE_064Isolated cWH basepair
IL_6RBE_065Minor groove platform
IL_6RBE_066No text annotation
IL_6RBE_067Minor groove platform
IL_6RBE_068Tandem non-canonical cWW pairs
IL_6RBE_069Major groove platform; stack outside cWW
IL_6RBE_070No text annotation
IL_6RBE_071No text annotation
IL_6RBE_072Tandem non-canonical cWW pairs
IL_6RBE_073No text annotation
IL_6RBE_074No text annotation
IL_6RBE_075Tandem non-canonical cWW pairs
IL_6RBE_076AA cWW
IL_6RBE_077No text annotation
IL_6RBE_078No text annotation
IL_6RBE_079Double sheared
IL_6RBE_080No text annotation
IL_6RBE_081Tandem non-canonical cWW pairs
IL_6RBE_082Triple sheared
IL_6RBE_083Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6RBE_0011/2/633:635,
1/2/861:865,
1/2/965:966		No text annotation
Not in a motif group
J3_6RBE_0021/2/881:885,
1/2/927:936,
1/2/943:947		No text annotation
Not in a motif group
J3_6RBE_0031/2/1037:1039,
1/2/1079:1083,
1/2/1090:1094		No text annotation
Not in a motif group		homologous
J3_4V88_034
NA
J3_6RBE_0041/2/1161:1164,
1/2/1581:1587,
1/2/1609:1616		No text annotation
Not in a motif group		homologous
J3_4V88_035
NA
J3_6RBE_0051/2/1168:1171,
1/2/1468:1470,
1/2/1574:1577		No text annotation
Not in a motif group		homologous
J3_8C3A_039
NA
J3_6RBE_0111/2/1470:1474,
1/2/1533:1540,
1/2/1571:1574		No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
J3_6RBE_006No text annotation
J3_6RBE_007No text annotation
J3_6RBE_008No text annotation
J3_6RBE_009No text annotation
J3_6RBE_010No text annotation

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