6W7N | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_6W7N_001 ➜	1/A/12:22	NA	NA
2	HL_6W7N_003 ➜	1/A/158:163	NA	NA
3	HL_6W7N_004 ➜	1/A/186:191	NA	NA
4	HL_6W7N_006 ➜	1/A/259:267	NA	NA
5	HL_6W7N_007 ➜	1/A/296:301	NA	NA
6	HL_6W7N_008 ➜	1/A/320:333	NA	NA
7	HL_6W7N_009 ➜	1/A/342:347	NA	NA
8	HL_6W7N_010 ➜	1/A/379:384	NA	NA
9	HL_6W7N_011 ➜	1/A/419:425	NA	NA
10	HL_6W7N_013 ➜	1/A/522:527	NA	NA
11	HL_6W7N_014 ➜	1/A/617:623	NA	NA
12	HL_6W7N_015 ➜	1/A/726:731	NA	NA
13	HL_6W7N_018 ➜	1/A/862:867	NA	NA
14	HL_6W7N_019 ➜	1/A/897:902	NA	NA
15	HL_6W7N_020 ➜	1/A/963:972	NA	NA
16	HL_6W7N_021 ➜	1/A/1012:1017	NA	NA
17	HL_6W7N_022 ➜	1/A/1028:1033	NA	NA
18	HL_6W7N_023 ➜	1/A/1076:1081	NA	NA
19	HL_6W7N_024 ➜	1/A/1089:1096	NA	NA
20	HL_6W7N_025 ➜	1/A/1133:1141	NA	NA
21	HL_6W7N_027 ➜	1/A/1265:1270	NA	NA
22	HL_6W7N_028 ➜	1/A/1314:1323	NA	NA
23	HL_6W7N_029 ➜	1/A/1356:1366	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_6W7N_002 ➜	missing nts	NA
2	HL_6W7N_005 ➜	missing nts	NA
3	HL_6W7N_012 ➜	missing nts	NA
4	HL_6W7N_016 ➜	missing nts	NA
5	HL_6W7N_017 ➜	missing nts	NA
6	HL_6W7N_026 ➜	missing nts	NA
7	HL_6W7N_030 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_6W7N_001 ➜	1/A/30:32,1/A/552:553	NA	NA
2	IL_6W7N_002 ➜	1/A/44:45,1/A/396:398	NA	NA
3	IL_6W7N_003 ➜	1/A/47:52,1/A/359:361	NA	NA
4	IL_6W7N_004 ➜	1/A/54:56,1/A/356:357	NA	NA
5	IL_6W7N_005 ➜	1/A/63:66,1/A/103:104	NA	NA
6	IL_6W7N_006 ➜	1/A/67:69,1/A/99:102	NA	NA
7	IL_6W7N_008 ➜	1/A/75:76,1/A/93:95	NA	NA
8	IL_6W7N_009 ➜	1/A/128:131,1/A/231:233	NA	NA
9	IL_6W7N_010 ➜	1/A/132:136,1/A/227:230	NA	NA
10	IL_6W7N_011 ➜	1/A/144:146,1/A/176:178	NA	NA
11	IL_6W7N_012 ➜	1/A/147:153,1/A/168:175	NA	NA
12	IL_6W7N_014 ➜	1/A/242:247,1/A/277:284	NA	NA
13	IL_6W7N_015 ➜	1/A/249:253,1/A/273:275	NA	NA
14	IL_6W7N_016 ➜	1/A/292:293,1/A/304:308	NA	NA
15	IL_6W7N_017 ➜	1/A/339:340,1/A/349:351	NA	NA
16	IL_6W7N_018 ➜	1/A/367:369,1/A/392:393	NA	NA
17	IL_6W7N_019 ➜	1/A/371:375,1/A/389:390	NA	NA
18	IL_6W7N_020 ➜	1/A/375:376,1/A/387:389	NA	NA
19	IL_6W7N_021 ➜	1/A/409:416,1/A/427:433	NA	NA
20	IL_6W7N_022 ➜	1/A/417:419,1/A/425:426	NA	NA
21	IL_6W7N_024 ➜	1/A/446:450,1/A/483:488	NA	NA
22	IL_6W7N_025 ➜	1/A/450:455,1/A/477:483	NA	NA
23	IL_6W7N_026 ➜	1/A/504:511,1/A/540:541	NA	NA
24	IL_6W7N_027 ➜	1/A/515:521,1/A/528:536	NA	NA
25	IL_6W7N_028 ➜	1/A/580:584,1/A/757:761	NA	NA
26	IL_6W7N_029 ➜	1/A/594:596,1/A/644:645	NA	NA
27	IL_6W7N_030 ➜	1/A/597:598,1/A/640:643	NA	NA
28	IL_6W7N_031 ➜	1/A/605:612,1/A/628:633	NA	NA
29	IL_6W7N_032 ➜	1/A/654:655,1/A/751:754	NA	NA
30	IL_6W7N_033 ➜	1/A/659:660,1/A/745:747	NA	NA
31	IL_6W7N_034 ➜	1/A/662:666,1/A/740:743	NA	NA
32	IL_6W7N_035 ➜	1/A/673:678,1/A/712:717	NA	NA
33	IL_6W7N_036 ➜	1/A/774:778,1/A/804:805	NA	NA
34	IL_6W7N_037 ➜	1/A/887:894,1/A/905:910	NA	NA
35	IL_6W7N_038 ➜	1/A/922:924,1/A/1392:1395	NA	NA
36	IL_6W7N_039 ➜	1/A/925:927,1/A/1390:1391	NA	NA
37	IL_6W7N_040 ➜	1/A/933:935,1/A/1380:1384	NA	NA
38	IL_6W7N_041 ➜	1/A/953:954,1/A/1226:1228	NA	NA
39	IL_6W7N_042 ➜	1/A/993:997,1/A/1044:1045	NA	NA
40	IL_6W7N_043 ➜	1/A/998:999,1/A/1041:1043	NA	NA
41	IL_6W7N_044 ➜	1/A/1048:1050,1/A/1208:1209	NA	NA
42	IL_6W7N_045 ➜	1/A/1052:1056,1/A/1204:1206	NA	NA
43	IL_6W7N_046 ➜	1/A/1057:1058,1/A/1199:1203	NA	NA
44	IL_6W7N_047 ➜	1/A/1060:1061,1/A/1195:1197	NA	NA
45	IL_6W7N_048 ➜	1/A/1061:1063,1/A/1193:1195	NA	NA
46	IL_6W7N_049 ➜	1/A/1124:1128,1/A/1144:1149	NA	NA
47	IL_6W7N_050 ➜	1/A/1129:1132,1/A/1142:1143	NA	NA
48	IL_6W7N_051 ➜	1/A/1158:1161,1/A/1175:1181	NA	NA
49	IL_6W7N_052 ➜	1/A/1247:1253,1/A/1284:1290	NA	NA
50	IL_6W7N_053 ➜	1/A/1255:1258,1/A/1277:1282	NA	NA
51	IL_6W7N_054 ➜	1/A/1259:1263,1/A/1272:1276	NA	NA
52	IL_6W7N_055 ➜	1/A/1303:1308,1/A/1329:1334	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_6W7N_007 ➜	missing nts	NA
2	IL_6W7N_013 ➜	missing nts	NA
3	IL_6W7N_023 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_6W7N_001 ➜	1/A/46:47,1/A/361:367,1/A/393:395	NA	NA
2	J3_6W7N_002 ➜	1/A/586:588,1/A/651:654,1/A/754:755	NA	NA
3	J3_6W7N_003 ➜	1/A/671:673,1/A/717:725,1/A/732:735	NA	NA
4	J3_6W7N_004 ➜	1/A/826:829,1/A/857:861,1/A/868:874	NA	NA
5	J3_6W7N_005 ➜	1/A/936:939,1/A/1344:1350,1/A/1372:1379	NA	NA
6	J3_6W7N_006 ➜	1/A/943:946,1/A/1235:1237,1/A/1337:1340	NA	NA
7	J3_6W7N_007 ➜	1/A/955:962,1/A/973:984,1/A/1221:1225	NA	NA
8	J3_6W7N_008 ➜	1/A/990:993,1/A/1045:1047,1/A/1210:1215	NA	NA
9	J3_6W7N_009 ➜	1/A/1003:1006,1/A/1023:1027,1/A/1034:1037	NA	NA
10	J3_6W7N_010 ➜	1/A/1063:1068,1/A/1107:1113,1/A/1187:1193	NA	NA
11	J3_6W7N_011 ➜	1/A/1073:1074,1/A/1083:1087,1/A/1098:1102	NA	NA
12	J3_6W7N_012 ➜	1/A/1116:1118,1/A/1155:1158,1/A/1181:1184	NA	NA
13	J3_6W7N_013 ➜	1/A/1237:1241,1/A/1296:1303,1/A/1334:1337	NA	NA

Problematic loops

No problematic loops

6W7N Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops