7NAR Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/A/12:22 | NA | NA | ||
| 1/A/158:163 | NA | NA | ||
| 1/A/186:191 | NA | NA | ||
| 1/A/259:267 | NA | NA | ||
| 1/A/296:301 | NA | NA | ||
| 1/A/320:333 | NA | NA | ||
| 1/A/342:347 | NA | NA | ||
| 1/A/379:384 | NA | NA | ||
| 1/A/419:424 | NA | NA | ||
| 1/A/521:528 | NA | NA | ||
| 1/A/617:623 | NA | NA | ||
| 1/A/726:731 | NA | NA | ||
| 1/A/862:867 | NA | NA | ||
| 1/A/897:902 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7NAR_002 | NA | ||
| HL_7NAR_005 | NA | ||
| HL_7NAR_012 | NA | ||
| HL_7NAR_015 | NA | ||
| HL_7NAR_017 | NA | ||
| HL_7NAR_018 | NA | ||
| HL_7NAR_021 | NA | ||
| HL_7NAR_022 | NA | ||
| HL_7NAR_023 | NA | ||
| HL_7NAR_024 | NA | ||
| HL_7NAR_025 | NA | ||
| HL_7NAR_026 | NA | ||
| HL_7NAR_027 | NA | ||
| HL_7NAR_028 | NA | ||
| HL_7NAR_029 | NA | ||
| HL_7NAR_030 | NA | ||
| HL_7NAR_031 | NA | ||
| HL_7NAR_032 | NA |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/A/30:32, 1/A/552:553 | NA | NA | ||
| 1/A/44:45, 1/A/396:398 | NA | NA | ||
| 1/A/47:52, 1/A/359:361 | NA | NA | ||
| 1/A/54:56, 1/A/356:357 | NA | NA | ||
| 1/A/63:66, 1/A/103:104 | NA | NA | ||
| 1/A/67:69, 1/A/99:102 | NA | NA | ||
| 1/A/75:76, 1/A/93:95 | NA | NA | ||
| 1/A/128:131, 1/A/231:233 | NA | NA | ||
| 1/A/132:136, 1/A/227:230 | NA | NA | ||
| 1/A/144:146, 1/A/176:178 | NA | NA | ||
| 1/A/147:153, 1/A/168:175 | NA | NA | ||
| 1/A/242:247, 1/A/277:284 | NA | NA | ||
| 1/A/249:252, 1/A/274:275 | NA | NA | ||
| 1/A/292:293, 1/A/304:308 | NA | NA | ||
| 1/A/367:369, 1/A/392:393 | NA | NA | ||
| 1/A/371:375, 1/A/389:390 | NA | NA | ||
| 1/A/375:376, 1/A/387:389 | NA | NA | ||
| 1/A/409:416, 1/A/427:433 | NA | NA | ||
| 1/A/446:450, 1/A/483:488 | NA | NA | ||
| 1/A/450:455, 1/A/477:483 | NA | NA | ||
| 1/A/504:511, 1/A/540:541 | NA | NA | ||
| 1/A/515:521, 1/A/528:536 | NA | NA | ||
| 1/A/569:575, 1/A/880:881 | NA | NA | ||
| 1/A/580:584, 1/A/757:761 | NA | NA | ||
| 1/A/594:596, 1/A/644:645 | NA | NA | ||
| 1/A/597:598, 1/A/640:643 | NA | NA | ||
| 1/A/605:612, 1/A/628:633 | NA | NA | ||
| 1/A/654:655, 1/A/751:754 | NA | NA | ||
| 1/A/658:659, 1/A/746:748 | NA | NA | ||
| 1/A/662:666, 1/A/740:743 | NA | NA | ||
| 1/A/673:678, 1/A/712:717 | NA | NA | ||
| 1/A/774:778, 1/A/804:805 | NA | NA | ||
| 1/A/887:894, 1/A/905:910 | NA | NA | ||
| 1/A/922:923, 1/A/1393:1395 | NA | NA | ||
| 1/A/925:927, 1/A/1390:1391 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7NAR_007 | NA | ||
| IL_7NAR_013 | NA | ||
| IL_7NAR_021 | NA | ||
| IL_7NAR_035 | NA | ||
| IL_7NAR_037 | NA | ||
| IL_7NAR_041 | NA | ||
| IL_7NAR_042 | NA | ||
| IL_7NAR_043 | NA | ||
| IL_7NAR_044 | NA | ||
| IL_7NAR_045 | NA | ||
| IL_7NAR_046 | NA | ||
| IL_7NAR_047 | NA | ||
| IL_7NAR_048 | NA | ||
| IL_7NAR_049 | NA | ||
| IL_7NAR_050 | NA | ||
| IL_7NAR_051 | NA | ||
| IL_7NAR_052 | NA | ||
| IL_7NAR_053 | NA | ||
| IL_7NAR_054 | NA | ||
| IL_7NAR_055 | NA | ||
| IL_7NAR_056 | NA | ||
| IL_7NAR_057 | NA | ||
| IL_7NAR_058 | NA | ||
| IL_7NAR_059 | NA | ||
| IL_7NAR_060 | NA | ||
| IL_7NAR_061 | NA | ||
| IL_7NAR_062 | NA | ||
| IL_7NAR_063 | NA | ||
| IL_7NAR_064 | NA | ||
| IL_7NAR_065 | NA | ||
| IL_7NAR_066 | NA |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/A/46:47, 1/A/361:367, 1/A/393:395 | NA | NA | ||
| 1/A/586:588, 1/A/651:654, 1/A/754:755 | NA | NA | ||
| 1/A/672:673, 1/A/717:725, 1/A/732:734 | NA | NA | ||
| 1/A/826:829, 1/A/857:861, 1/A/868:874 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7NAR_005 | NA | ||
| J3_7NAR_006 | NA | ||
| J3_7NAR_007 | NA | ||
| J3_7NAR_008 | NA | ||
| J3_7NAR_009 | NA | ||
| J3_7NAR_010 | NA | ||
| J3_7NAR_011 | NA | ||
| J3_7NAR_012 | NA | ||
| J3_7NAR_013 | NA |
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