RNA 3D Hub //

7NAR Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7NAR_0011/A/12:22No text annotation
Not in a motif group		homologous
HL_5J7L_001
HL_89881.2
HL_7NAR_0031/A/158:163GNRA
Not in a motif group		homologous
HL_5J7L_003
HL_42097.1
HL_7NAR_0041/A/186:191GNRA
Not in a motif group		homologous
HL_5J7L_004
HL_42097.1
HL_7NAR_0061/A/259:267No text annotation
Not in a motif group		homologous
HL_5J7L_006
HL_69023.2
HL_7NAR_0071/A/296:301GNRA
Not in a motif group		homologous
HL_5J7L_007
HL_42097.1
HL_7NAR_0081/A/320:333No text annotation
Not in a motif group		homologous
HL_5J7L_008
HL_81205.2
HL_7NAR_0091/A/342:347UNCG
Not in a motif group		homologous
HL_5J7L_009
HL_03562.2
HL_7NAR_0101/A/379:384GNRA
Not in a motif group		homologous
HL_5J7L_010
HL_42097.1
HL_7NAR_0111/A/419:424UNCG
Not in a motif group		homologous
HL_4LFB_011
HL_03562.2
HL_7NAR_0131/A/521:528No text annotation
Not in a motif group		geometric
HL_1WZ2_007
HL_10278.1
HL_7NAR_0141/A/617:623No text annotation
Not in a motif group		homologous
HL_4LFB_014
HL_26881.1
HL_7NAR_0161/A/726:731Other HL
Not in a motif group		homologous
HL_5J7L_016
HL_87030.2
HL_7NAR_0191/A/862:867GNRA
Not in a motif group		homologous
HL_5J7L_019
HL_42097.1
HL_7NAR_0201/A/897:902GNRA
Not in a motif group		homologous
HL_4LFB_020
HL_42097.1

Problematic loops

#loop idProblemSequence
HL_7NAR_002No text annotation
HL_7NAR_005UNCG
HL_7NAR_012No text annotation
HL_7NAR_015No text annotation
HL_7NAR_017No text annotation
HL_7NAR_018GNRA with one bulged base
HL_7NAR_021No text annotation
HL_7NAR_022GNRA
HL_7NAR_023UNCG
HL_7NAR_024GNRA
HL_7NAR_025No text annotation
HL_7NAR_026No text annotation
HL_7NAR_027GNRA
HL_7NAR_028GNRA
HL_7NAR_029No text annotation
HL_7NAR_030No text annotation
HL_7NAR_031UNCG
HL_7NAR_032No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7NAR_0011/A/30:32,
1/A/552:553		Single bulged G
Not in a motif group		homologous
IL_5J7L_001
IL_00225.2
IL_7NAR_0021/A/44:45,
1/A/396:398		Single bulged A
Not in a motif group		homologous
IL_5J7L_002
IL_37497.2
IL_7NAR_0031/A/47:52,
1/A/359:361		No text annotation
Not in a motif group		homologous
IL_5J7L_003
IL_11178.1
IL_7NAR_0041/A/54:56,
1/A/356:357		Minor groove platform
Not in a motif group		homologous
IL_4LFB_004
IL_93353.1
IL_7NAR_0051/A/63:66,
1/A/103:104		Multiple bulged bases
Not in a motif group		homologous
IL_5J7L_005
IL_76389.1
IL_7NAR_0061/A/67:69,
1/A/99:102		Minor groove platform with extra cWW
Not in a motif group		homologous
IL_5J7L_006
IL_65006.1
IL_7NAR_0081/A/75:76,
1/A/93:95		Multiple bulged bases
Not in a motif group		geometric
IL_6JQ5_004
IL_76389.1
IL_7NAR_0091/A/128:131,
1/A/231:233		Isolated non-canonical cWW with bulges
Not in a motif group		homologous
IL_5J7L_009
IL_82068.2
IL_7NAR_0101/A/132:136,
1/A/227:230		Minor groove platform related
Not in a motif group		homologous
IL_5J7L_010
IL_58764.3
IL_7NAR_0111/A/144:146,
1/A/176:178		Isolated cWH basepair
Not in a motif group		homologous
IL_5J7L_011
IL_51629.2
IL_7NAR_0121/A/147:153,
1/A/168:175		tWH-tWH-tHW-tHW
Not in a motif group		homologous
IL_5J7L_012
IL_80604.2
IL_7NAR_0141/A/242:247,
1/A/277:284		Kink-turn with non-sequential stacking
Not in a motif group		homologous
IL_5J7L_014
IL_45067.2
IL_7NAR_0151/A/249:252,
1/A/274:275		No text annotation
Not in a motif group		homologous
IL_4LFB_012
IL_48100.2
IL_7NAR_0161/A/292:293,
1/A/304:308		C-loop
Not in a motif group		homologous
IL_4LFB_013
IL_37712.2
IL_7NAR_0171/A/367:369,
1/A/392:393		Single bulged U
Not in a motif group		geometric
IL_5J7L_017
IL_83039.13
IL_7NAR_0181/A/371:375,
1/A/389:390		C-loop
Not in a motif group		homologous
IL_5J7L_018
IL_75255.1
IL_7NAR_0191/A/375:376,
1/A/387:389		Single bulged G
Not in a motif group		geometric
IL_5J7L_019
IL_00225.2
IL_7NAR_0201/A/409:416,
1/A/427:433		No text annotation
Not in a motif group		homologous
IL_5J7L_020
IL_28026.1
IL_7NAR_0221/A/446:450,
1/A/483:488		tSH-tHW-tWW
Not in a motif group		geometric
IL_5J7L_022
IL_88269.3
IL_7NAR_0231/A/450:455,
1/A/477:483		No text annotation
Not in a motif group		homologous
IL_5J7L_023
IL_70801.1
IL_7NAR_0241/A/504:511,
1/A/540:541		SSU/LSU pseudoknot
Not in a motif group		homologous
IL_5J7L_024
IL_15861.7
IL_7NAR_0251/A/515:521,
1/A/528:536		No text annotation
Not in a motif group		homologous
IL_5J7L_025
NA
IL_7NAR_0261/A/569:575,
1/A/880:881		No text annotation
Not in a motif group		homologous
IL_5J7L_026
IL_69996.1
IL_7NAR_0271/A/580:584,
1/A/757:761		tSH-tHW-tHS
Not in a motif group		homologous
IL_5J7L_027
IL_17136.1
IL_7NAR_0281/A/594:596,
1/A/644:645		Major groove platform
Not in a motif group		homologous
IL_5J7L_028
IL_27635.1
IL_7NAR_0291/A/597:598,
1/A/640:643		Major groove minor groove platform; mini C-loop
Not in a motif group		homologous
IL_4LFB_025
IL_09061.6
IL_7NAR_0301/A/605:612,
1/A/628:633		No text annotation
Not in a motif group		homologous
IL_5J7L_030
IL_78349.1
IL_7NAR_0311/A/654:655,
1/A/751:754		Major groove platform; stack outside cWW
Not in a motif group		geometric
IL_5J7L_031
IL_50694.2
IL_7NAR_0321/A/658:659,
1/A/746:748		Single stack bend
Not in a motif group		homologous
IL_5J7L_032
IL_76488.2
IL_7NAR_0331/A/662:666,
1/A/740:743		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5J7L_033
IL_71110.1
IL_7NAR_0341/A/673:678,
1/A/712:717		No text annotation
Not in a motif group		geometric
IL_4LFB_030
IL_04668.1
IL_7NAR_0361/A/774:778,
1/A/804:805		Left turn
Not in a motif group		homologous
IL_4LFB_032
IL_29346.1
IL_7NAR_0381/A/887:894,
1/A/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group		homologous
IL_5J7L_038
IL_24606.2
IL_7NAR_0391/A/922:923,
1/A/1393:1395		Single bulged A
Not in a motif group		homologous
IL_5J7L_039
IL_37497.2
IL_7NAR_0401/A/925:927,
1/A/1390:1391		Single bulged G
Not in a motif group		homologous
IL_5J7L_040
IL_00225.2

Problematic loops

#loop idProblemSequence
IL_7NAR_007Minor groove platform
IL_7NAR_013Minor groove platform
IL_7NAR_021No text annotation
IL_7NAR_035Kink-turn
IL_7NAR_037tSH-tHW-tHS
IL_7NAR_041Minor groove platform
IL_7NAR_042Minor groove platform
IL_7NAR_043Minor groove platform
IL_7NAR_044Single stack bend
IL_7NAR_045Isolated cWH basepair
IL_7NAR_046Single bulged U
IL_7NAR_047No text annotation
IL_7NAR_048Isolated cWS basepair
IL_7NAR_049Minor groove platform
IL_7NAR_050Single bulged A
IL_7NAR_051No text annotation
IL_7NAR_052No text annotation
IL_7NAR_053Minor groove platform
IL_7NAR_054No text annotation
IL_7NAR_055No text annotation
IL_7NAR_056No text annotation
IL_7NAR_057Triple sheared
IL_7NAR_058No text annotation
IL_7NAR_059No text annotation
IL_7NAR_060No text annotation
IL_7NAR_061No text annotation
IL_7NAR_062No text annotation
IL_7NAR_063Double sheared
IL_7NAR_064Triple sheared related
IL_7NAR_065Minor groove platform
IL_7NAR_066No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7NAR_0011/A/46:47,
1/A/361:367,
1/A/393:395		No text annotation
Not in a motif group
J3_7NAR_0021/A/586:588,
1/A/651:654,
1/A/754:755		No text annotation
Not in a motif group		homologous
J3_5J7L_002
NA
J3_7NAR_0031/A/672:673,
1/A/717:725,
1/A/732:734		No text annotation
Not in a motif group		homologous
J3_5J7L_003
NA
J3_7NAR_0041/A/826:829,
1/A/857:861,
1/A/868:874		No text annotation
Not in a motif group		homologous
J3_5J7L_004
NA

Problematic loops

#loop idProblemSequence
J3_7NAR_005No text annotation
J3_7NAR_006No text annotation
J3_7NAR_007No text annotation
J3_7NAR_008No text annotation
J3_7NAR_009No text annotation
J3_7NAR_010No text annotation
J3_7NAR_011No text annotation
J3_7NAR_012No text annotation
J3_7NAR_013No text annotation

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