RNA 3D Hub //

7NAU Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7NAU_0011/A/12:22No text annotation
Not in a motif group		homologous
HL_4LFB_001
HL_89881.2
HL_7NAU_0031/A/158:163GNRA
Not in a motif group		homologous
HL_5J7L_003
HL_42097.1
HL_7NAU_0041/A/186:191GNRA
Not in a motif group		homologous
HL_5J7L_004
HL_42097.1
HL_7NAU_0061/A/259:267No text annotation
Not in a motif group		homologous
HL_5J7L_006
HL_69023.2
HL_7NAU_0071/A/296:301GNRA
Not in a motif group		homologous
HL_5J7L_007
HL_42097.1
HL_7NAU_0081/A/320:333No text annotation
Not in a motif group		homologous
HL_5J7L_008
HL_81205.2
HL_7NAU_0091/A/342:347No text annotation
Not in a motif group		homologous
HL_6CZR_080
HL_03562.2
HL_7NAU_0101/A/379:384GNRA
Not in a motif group		homologous
HL_5J7L_010
HL_42097.1
HL_7NAU_0111/A/419:424UNCG
Not in a motif group		homologous
HL_4LFB_011
HL_03562.2
HL_7NAU_0131/A/521:528No text annotation
Not in a motif group		homologous
HL_4LFB_013
NA
HL_7NAU_0141/A/617:623No text annotation
Not in a motif group		homologous
HL_4LFB_014
HL_26881.1
HL_7NAU_0161/A/726:731Other HL
Not in a motif group		homologous
HL_5J7L_016
HL_87030.2
HL_7NAU_0191/A/862:867GNRA
Not in a motif group		homologous
HL_5J7L_019
HL_42097.1
HL_7NAU_0201/A/897:902GNRA
Not in a motif group		homologous
HL_5J7L_020
HL_42097.1

Problematic loops

#loop idProblemSequence
HL_7NAU_002No text annotation
HL_7NAU_005UNCG
HL_7NAU_012No text annotation
HL_7NAU_015No text annotation
HL_7NAU_017tRNA anticodon loop
HL_7NAU_018No text annotation
HL_7NAU_021No text annotation
HL_7NAU_022GNRA
HL_7NAU_023No text annotation
HL_7NAU_024GNRA
HL_7NAU_025No text annotation
HL_7NAU_026No text annotation
HL_7NAU_027No text annotation
HL_7NAU_028Other HL
HL_7NAU_029No text annotation
HL_7NAU_030No text annotation
HL_7NAU_031UNCG
HL_7NAU_032No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7NAU_0011/A/30:32,
1/A/552:553		Single bulged G
Not in a motif group		homologous
IL_4LFB_001
IL_00225.2
IL_7NAU_0021/A/44:45,
1/A/396:398		Single bulged A
Not in a motif group		homologous
IL_5J7L_002
IL_37497.2
IL_7NAU_0031/A/47:52,
1/A/359:361		No text annotation
Not in a motif group		geometric
IL_5J7L_003
IL_11178.1
IL_7NAU_0041/A/54:56,
1/A/356:357		Minor groove platform
Not in a motif group		homologous
IL_4LFB_004
IL_93353.1
IL_7NAU_0051/A/63:66,
1/A/103:104		Multiple bulged bases
Not in a motif group		homologous
IL_4LFB_005
IL_76389.1
IL_7NAU_0061/A/67:69,
1/A/99:102		Minor groove platform with extra cWW
Not in a motif group		homologous
IL_5J7L_006
IL_65006.1
IL_7NAU_0081/A/75:76,
1/A/93:95		Single bulged G
Not in a motif group		geometric
IL_5DEA_002
IL_00225.2
IL_7NAU_0091/A/128:131,
1/A/231:233		Isolated non-canonical cWW with bulges
Not in a motif group		homologous
IL_5J7L_009
IL_82068.2
IL_7NAU_0101/A/132:136,
1/A/227:230		Minor groove platform related
Not in a motif group		homologous
IL_5J7L_010
IL_58764.3
IL_7NAU_0111/A/144:146,
1/A/176:178		Isolated cWH basepair
Not in a motif group		homologous
IL_5J7L_011
IL_51629.2
IL_7NAU_0121/A/147:153,
1/A/168:175		tWH-tWH-tHW-tHW
Not in a motif group		homologous
IL_5J7L_012
IL_80604.2
IL_7NAU_0141/A/242:247,
1/A/277:284		Kink-turn with non-sequential stacking
Not in a motif group		homologous
IL_5J7L_014
IL_45067.2
IL_7NAU_0151/A/249:252,
1/A/274:275		No text annotation
Not in a motif group		homologous
IL_4LFB_012
IL_48100.2
IL_7NAU_0161/A/292:293,
1/A/304:308		C-loop
Not in a motif group		homologous
IL_4LFB_013
IL_37712.2
IL_7NAU_0171/A/367:369,
1/A/392:393		Single bulged U
Not in a motif group		homologous
IL_5J7L_017
IL_83039.13
IL_7NAU_0181/A/371:375,
1/A/389:390		C-loop
Not in a motif group		geometric
IL_5J7L_018
IL_75255.1
IL_7NAU_0191/A/375:376,
1/A/387:389		Single bulged G
Not in a motif group		homologous
IL_5J7L_019
IL_00225.2
IL_7NAU_0201/A/409:416,
1/A/427:433		No text annotation
Not in a motif group		homologous
IL_5J7L_020
IL_28026.1
IL_7NAU_0221/A/446:450,
1/A/483:488		tSH-tHW-tWW
Not in a motif group		homologous
IL_5J7L_022
IL_88269.3
IL_7NAU_0231/A/450:455,
1/A/477:483		No text annotation
Not in a motif group		geometric
IL_5J7L_023
IL_70801.1
IL_7NAU_0241/A/504:511,
1/A/540:541		SSU/LSU pseudoknot
Not in a motif group		homologous
IL_5J7L_024
IL_15861.7
IL_7NAU_0251/A/514:521,
1/A/528:537		No text annotation
Not in a motif group
IL_7NAU_0261/A/569:575,
1/A/880:881		No text annotation
Not in a motif group		homologous
IL_4LFB_022
IL_69996.1
IL_7NAU_0271/A/580:584,
1/A/757:761		tSH-tHW-tHS
Not in a motif group		homologous
IL_5J7L_027
IL_17136.1
IL_7NAU_0281/A/594:596,
1/A/644:645		Major groove platform
Not in a motif group		homologous
IL_5J7L_028
IL_27635.1
IL_7NAU_0291/A/597:598,
1/A/640:643		Major groove minor groove platform; mini C-loop
Not in a motif group		homologous
IL_4LFB_025
IL_09061.6
IL_7NAU_0301/A/605:612,
1/A/628:633		No text annotation
Not in a motif group		homologous
IL_5J7L_030
IL_78349.1
IL_7NAU_0311/A/654:655,
1/A/751:754		Major groove platform; stack outside cWW
Not in a motif group		geometric
IL_5J7L_031
IL_50694.2
IL_7NAU_0321/A/658:660,
1/A/745:748		No text annotation
Not in a motif group		geometric
IL_4N0T_004
IL_46796.1
IL_7NAU_0331/A/662:666,
1/A/740:743		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5J7L_033
IL_71110.1
IL_7NAU_0341/A/673:678,
1/A/712:717		No text annotation
Not in a motif group		geometric
IL_4LFB_030
IL_04668.1
IL_7NAU_0361/A/774:778,
1/A/804:805		Left turn
Not in a motif group		homologous
IL_4LFB_032
IL_29346.1
IL_7NAU_0381/A/887:894,
1/A/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group		homologous
IL_5J7L_038
IL_24606.2

Problematic loops

#loop idProblemSequence
IL_7NAU_007Minor groove platform
IL_7NAU_013Minor groove platform
IL_7NAU_021No text annotation
IL_7NAU_035Kink-turn
IL_7NAU_037tSH-tHW-tHS
IL_7NAU_039No text annotation
IL_7NAU_040Minor groove platform
IL_7NAU_041Minor groove platform
IL_7NAU_042Single stack bend
IL_7NAU_043UC cWW
IL_7NAU_044Single bulged U
IL_7NAU_045Self complementary
IL_7NAU_046Isolated cWS basepair
IL_7NAU_047Minor groove platform
IL_7NAU_048Single bulged A
IL_7NAU_049No text annotation
IL_7NAU_050No text annotation
IL_7NAU_051Minor groove platform
IL_7NAU_052No text annotation
IL_7NAU_053No text annotation
IL_7NAU_054No text annotation
IL_7NAU_055Triple sheared
IL_7NAU_056No text annotation
IL_7NAU_057No text annotation
IL_7NAU_058No text annotation
IL_7NAU_059Double sheared
IL_7NAU_060Triple sheared related
IL_7NAU_061Minor groove platform
IL_7NAU_062No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7NAU_0011/A/46:47,
1/A/361:367,
1/A/393:395		No text annotation
Not in a motif group
J3_7NAU_0021/A/586:588,
1/A/651:654,
1/A/754:755		No text annotation
Not in a motif group		homologous
J3_5J7L_002
NA
J3_7NAU_0031/A/672:673,
1/A/717:725,
1/A/732:734		No text annotation
Not in a motif group		homologous
J3_5J7L_003
NA
J3_7NAU_0041/A/826:829,
1/A/857:861,
1/A/868:874		No text annotation
Not in a motif group		homologous
J3_5J7L_004
NA

Problematic loops

#loop idProblemSequence
J3_7NAU_005No text annotation
J3_7NAU_006No text annotation
J3_7NAU_007No text annotation
J3_7NAU_008No text annotation
J3_7NAU_009No text annotation
J3_7NAU_010No text annotation
J3_7NAU_011No text annotation
J3_7NAU_012No text annotation

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