7BGD Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7BGD_001 | No text annotation | ||
| HL_7BGD_002 | No text annotation | ||
| HL_7BGD_003 | No text annotation | ||
| HL_7BGD_004 | No text annotation | ||
| HL_7BGD_005 | No text annotation | ||
| HL_7BGD_006 | No text annotation | ||
| HL_7BGD_007 | GNRA | ||
| HL_7BGD_008 | No text annotation | ||
| HL_7BGD_009 | UNCG | ||
| HL_7BGD_010 | GNRA | ||
| HL_7BGD_011 | UNCG | ||
| HL_7BGD_012 | No text annotation | ||
| HL_7BGD_013 | No text annotation | ||
| HL_7BGD_014 | No text annotation | ||
| HL_7BGD_015 | No text annotation | ||
| HL_7BGD_016 | Other HL | ||
| HL_7BGD_017 | No text annotation | ||
| HL_7BGD_018 | No text annotation | ||
| HL_7BGD_019 | GNRA | ||
| HL_7BGD_020 | GNRA | ||
| HL_7BGD_021 | No text annotation | ||
| HL_7BGD_022 | No text annotation | ||
| HL_7BGD_023 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7BGD_001 | Single bulged G | ||
| IL_7BGD_002 | Single bulged A | ||
| IL_7BGD_003 | No text annotation | ||
| IL_7BGD_004 | Minor groove platform | ||
| IL_7BGD_005 | Multiple bulged bases | ||
| IL_7BGD_006 | Tandem non-canonical cWW pairs | ||
| IL_7BGD_007 | Multiple bulged bases | ||
| IL_7BGD_008 | No text annotation | ||
| IL_7BGD_009 | tWH-tWH-tHW-tHW | ||
| IL_7BGD_010 | No text annotation | ||
| IL_7BGD_011 | Single stack bend | ||
| IL_7BGD_012 | Single stack bend | ||
| IL_7BGD_013 | Kink-turn with non-sequential stacking | ||
| IL_7BGD_014 | No text annotation | ||
| IL_7BGD_015 | C-loop | ||
| IL_7BGD_016 | Single bulged U | ||
| IL_7BGD_017 | C-loop | ||
| IL_7BGD_018 | Single bulged G | ||
| IL_7BGD_019 | No text annotation | ||
| IL_7BGD_020 | Single stack bend | ||
| IL_7BGD_021 | SSU/LSU pseudoknot | ||
| IL_7BGD_022 | No text annotation | ||
| IL_7BGD_023 | tSH-tHW-tHS | ||
| IL_7BGD_024 | Major groove platform | ||
| IL_7BGD_025 | Major groove minor groove platform; mini C-loop | ||
| IL_7BGD_026 | Single bulged U | ||
| IL_7BGD_027 | No text annotation | ||
| IL_7BGD_028 | Major groove platform; stack outside cWW | ||
| IL_7BGD_029 | No text annotation | ||
| IL_7BGD_030 | Tandem non-canonical cWW pairs | ||
| IL_7BGD_031 | No text annotation | ||
| IL_7BGD_032 | Kink-turn | ||
| IL_7BGD_033 | Other IL | ||
| IL_7BGD_034 | tSH-tHW-tHS | ||
| IL_7BGD_035 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_7BGD_036 | Single bulged A | ||
| IL_7BGD_037 | Single bulged G | ||
| IL_7BGD_038 | No text annotation | ||
| IL_7BGD_039 | No text annotation | ||
| IL_7BGD_040 | No text annotation | ||
| IL_7BGD_041 | Decoding loop related | ||
| IL_7BGD_042 | No text annotation | ||
| IL_7BGD_043 | Triple sheared | ||
| IL_7BGD_044 | Tandem non-canonical cWW pairs | ||
| IL_7BGD_045 | Triple sheared related | ||
| IL_7BGD_046 | No text annotation | ||
| IL_7BGD_047 | Isolated tHS basepair with bulges | ||
| IL_7BGD_048 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7BGD_001 | No text annotation | ||
| J3_7BGD_002 | No text annotation | ||
| J3_7BGD_003 | No text annotation | ||
| J3_7BGD_004 | No text annotation |
Coloring options: