1 HL_4QLM_001 4QLM 0.7586 0 GNRA A cyclic di-AMP riboswitch C 54 G 55 A 56 A 57 A 58 G 59 cWW ntSH
2 HL_1M5K_003 1M5K 0.6070 0 GNRA B Hairpin ribozyme G 74 G 75 A 76 A 77 A 78 C 79 cWW ntSH
3 HL_6CB3_004 6CB3 0.5614 0 GNRA B RNA (99-MER) G 20 G 21 A 22 A 23 A 24 C 25 cWW ntSH
4 HL_6AZ4_001 6AZ4 0.5442 0 GNRA A RNA (32-MER) U 20 G 21 A 22 A 23 A 24 G 25 cWW ntSH
5 HL_4V88_218 4V88 0.5632 0 GNRA A6 SSU rRNA C 1501 G 1502 A 1503 G 1504 A 1505 G 1506 cWW ntSH
6 HL_4V88_200 4V88 0.6252 0 GNRA variation A6 SSU rRNA C 569 A 570 G 571 C 572 C 573 G 574 cWW
7 HL_3AM1_002 3AM1 0.4826 0 GNRA variation B ASL-truncated tRNA C 32 U 33 U 34 C 35 G 36 G 37 cWW
8 HL_3AM1_006 3AM1 0.4826 0 GNRA variation B ASL-truncated tRNA C 32||||5_555 U 33||||5_555 U 34||||5_555 C 35||||5_555 G 36||||5_555 G 37||||5_555 cWW
9 HL_4KQY_005 4KQY 0.4264 0 GNRA A SAM-I riboswitch C 60||||4_555 G 61||||4_555 A 62||||4_555 A 63||||4_555 A 64||||4_555 G 65||||4_555 ncWW ntSH
10 HL_4KQY_002 4KQY 0.4264 0 GNRA A SAM-I riboswitch C 60 G 61 A 62 A 63 A 64 G 65 ncWW ntSH
11 HL_5U3G_002 5U3G 0.2715 0 GNRA B Guanidine-I riboswitch C 47 G 48 A 49 A 50 A 51 G 52 cWW ntSH
12 HL_6UFH_004 6UFH 0.3623 0 GNRA A RNA (167-MER) C 106 G 107 A 108 A 109 A 110 G 111 cWW
13 HL_4V9F_033 4V9F 0.4368 0 GNRA 0 LSU rRNA C 1326 G 1327 A 1328 G 1329 A 1330 G 1331 cWW
14 HL_2BTE_003 2BTE 0.4118 0 GNRA B tRNA C 46 G 47 C 47|||A A 47|||B A 47|||C G 47|||D cWW
15 HL_4WF9_059 4WF9 0.3749 0 GNRA X LSU rRNA C 2621 G 2622 U 2623 G 2624 A 2625 G 2626 cWW
16 HL_7RQB_063 7RQB 0.3068 0 GNRA 1A LSU rRNA C 2594 G 2595 U 2596 G 2597 A 2598 G 2599 cWW ntSH
17 HL_7A0S_062 7A0S 0.3073 0 GNRA X LSU rRNA C 2573 G 2574 U 2575 G 2576 A 2577 G 2578 cWW
18 HL_4WF9_015 4WF9 0.2996 0 GNRA X LSU rRNA C 508 G 509 U 510 G 511 A 512 G 513 cWW
19 HL_7RQB_015 7RQB 0.2777 0 GNRA 1A LSU rRNA C 462 G 463 U 464 G 465 A 466 G 467 cWW
20 HL_5J7L_147 5J7L 0.2747 0 GNRA DA LSU rRNA C 462 G 463 U 464 G 465 A 466 G 467 cWW
21 HL_4QK9_002 4QK9 0.2961 0 GNRA A cyclic di-AMP riboswitch C 56 G 57 U 58 A 59 A 60 G 61 cWW
22 HL_2OIU_003 2OIU 0.2777 0 GNRA P L1 Ribozyme RNA Ligase C 59 G 60 A 61 A 62 A 63 G 64 cWW
23 HL_3NPQ_001 3NPQ 0.3167 0 GNRA A SAH (S-adenosyl-L-homocysteine) riboswitch aptamer C 20 G 21 A 22 G 23 A 24 G 25 cWW
24 HL_3NKB_002 3NKB 0.3066 0 GNRA B Hepatitis delta virus ribozyme C 49 G 50 A 51 A 52 A 53 G 54 cWW
25 HL_4V9F_015 4V9F 0.3261 0 GNRA 0 LSU rRNA U 468 G 469 U 470 G 471 A 472 A 473 cWW
26 HL_7A0S_015 7A0S 0.3268 0 GNRA X LSU rRNA C 473 G 474 U 475 G 476 A 477 G 478 cWW
27 HL_7RQB_032 7RQB 0.3559 0 GNRA 1A LSU rRNA C 1222 G 1223 C 1224 G 1225 A 1226 G 1227 cWW
28 HL_4YAZ_003 4YAZ 0.3289 0 GNRA R Cyclic di-GMP-I riboswitch C 25 G 26 C 27 G 28 A 29 G 30 cWW
29 HL_4V9F_017 4V9F 0.3390 0 GNRA 0 LSU rRNA C 576 G 577 C 578 G 579 A 580 G 581 cWW
30 HL_4V9F_065 4V9F 0.3189 0 GNRA 0 LSU rRNA C 2629 G 2630 U 2631 G 2632 A 2633 G 2634 cWW
31 HL_5J7L_196 5J7L 0.2998 0 GNRA DA LSU rRNA C 2594 G 2595 U 2596 G 2597 A 2598 G 2599 cWW
32 HL_5TBW_064 5TBW 0.2899 0 GNRA 1 LSU rRNA C 2963 G 2964 U 2965 G 2966 A 2967 G 2968 cWW
33 HL_7RQB_069 7RQB 0.3395 0 GNRA 1A LSU rRNA C 2856 G 2857 C 2858 G 2859 A 2860 G 2861 cWW
34 HL_5J7L_027 5J7L 0.3866 0 GNRA AA SSU rRNA C 1265 G 1266 C 1267 G 1268 A 1269 G 1270 cWW
35 HL_4LFB_024 4LFB 0.3804 0 GNRA A SSU rRNA C 1076 G 1077 U 1078 G 1079 A 1080 G 1081 cWW
36 HL_5J7L_023 5J7L 0.3883 0 GNRA AA SSU rRNA U 1076 G 1077 U 1078 G 1079 A 1080 A 1081 cWW
37 HL_5TBW_030 5TBW 0.4140 0 GNRA 1 LSU rRNA C 1403 G 1404 U 1405 A 1406 A 1407 G 1408 cWW
38 HL_3W3S_003 3W3S 0.3297 0 GNRA B Selenocysteine transfer RNA C 47|||F G 47|||G C 47|||H A 47|||I A 47|||J G 47|||K cWW
39 HL_3W3S_007 3W3S 0.3297 0 GNRA B Selenocysteine transfer RNA C 47|||F|43_455 G 47|||G|43_455 C 47|||H|43_455 A 47|||I|43_455 A 47|||J|43_455 G 47|||K|43_455 cWW
40 HL_4LVW_002 4LVW 0.3633 0 GNRA A THF riboswitch C 58 G 59 A 60 G 61 A 62 G 63 cWW
41 HL_6DME_001 6DME 0.2488 0 GNRA A ppGpp Riboswitch C 25 G 26 A 27 G 28 A 29 G 30 cWW
42 HL_6JQ5_002 6JQ5 0.2462 0 GNRA A Hatchet ribozyme C 45 G 46 A 47 A 48 A 49 G 50 cWW
43 HL_4V9F_060 4V9F 0.2417 0 GNRA 0 LSU rRNA C 2411 G 2412 A 2413 A 2414 A 2415 G 2416 cWW
44 HL_7A0S_020 7A0S 0.2548 0 GNRA X LSU rRNA C 640 G 641 A 642 A 643 A 644 G 645 cWW
45 HL_6CZR_095 6CZR 0.3331 0 GNRA 1a SSU rRNA C 1059 G 1060 U 1061 G 1062 A 1063 G 1064 cWW
46 HL_4WF9_054 4WF9 0.2170 0 GNRA X LSU rRNA C 2401 G 2402 A 2403 A 2404 A 2405 G 2406 cWW
47 HL_4WF9_020 4WF9 0.2375 0 GNRA X LSU rRNA C 674 G 675 A 676 A 677 A 678 G 679 cWW
48 HL_7A0S_070 7A0S 0.3302 0 GNRA Y 5S rRNA C 88 G 89 C 90 A 91 G 92 G 93 cWW
49 HL_5J7L_191 5J7L 0.2388 0 GNRA DA LSU rRNA C 2374 G 2375 A 2376 A 2377 A 2378 G 2379 cWW
50 HL_4P95_006 4P95 0.2709 0 GNRA A RNA (192-MER) C 567 G 568 A 569 A 570 A 571 G 572 cWW
51 HL_6CB3_006 6CB3 0.2823 0 GNRA B RNA (99-MER) C 76 G 77 A 78 A 79 A 80 G 81 cWW
52 HL_2ZZM_003 2ZZM 0.2923 0 GNRA B tRNA C 47 G 47|||A U 47|||B A 47|||C G 47|||D G 47|||E cWW
53 HL_4PQV_001 4PQV 0.3527 0 GNRA A Flavivirus 3' UTR stem loop IV C 13 G 14 A 15 A 16 A 17 G 18 cWW
54 HL_3E5C_002 3E5C 0.3070 0 GNRA A SAM-III riboswitch aptamer (SMK box) C 41 G 42 A 43 A 44 A 45 G 46 cWW
55 HL_6UFG_004 6UFG 0.1903 0 GNRA A RNA (166-MER) C 105 G 106 A 107 A 108 A 109 G 110 cWW ntSH
56 HL_3SUX_004 3SUX 0.2192 0 GNRA X THF riboswitch C 65||||17_555 G 66||||17_555 A 67||||17_555 A 68||||17_555 A 69||||17_555 G 70||||17_555 cWW
57 HL_3SUX_002 3SUX 0.2192 0 GNRA X THF riboswitch C 65 G 66 A 67 A 68 A 69 G 70 cWW
58 HL_6CU1_002 6CU1 0.2833 0 GNRA A Y RNA-like C 42 G 43 A 44 A 45 A 46 G 47 cWW
59 HL_5TBW_016 5TBW 0.3319 0 GNRA 1 LSU rRNA U 707 G 708 A 709 A 710 A 711 G 712 cWW
60 HL_7RQB_047 7RQB 0.3242 0 GNRA 1A LSU rRNA U 1864 G 1865 C 1866 A 1876 A 1877 G 1878 cWW
61 HL_5TBW_059 5TBW 0.3095 0 GNRA 1 LSU rRNA U 2744 G 2745 A 2746 A 2747 A 2748 G 2749 cWW
62 HL_5J7L_190 5J7L 0.3299 0 GNRA DA LSU rRNA U 2356 G 2357 A 2358 C 2359 G 2360 G 2361 cWW
63 HL_4C7O_001 4C7O 0.3666 0 GNRA E SRP RNA C 19 G 20 G 21 A 22 A 23 G 24 cWW
64 HL_1L9A_001 1L9A 0.4728 0 GNRA variation B SRP RNA G 146 G 147 G 148 A 149 G 150 C 151 cWW
65 HL_1JID_001 1JID 0.4702 0 GNRA variation B HELIX 6 OF HUMAN SRP RNA G 146 G 147 G 148 A 149 G 150 C 151 cWW
66 HL_1MFQ_001 1MFQ 0.4976 0 GNRA variation A SRP RNA G 146 G 147 G 148 A 149 G 150 C 151 cWW
67 HL_6UFG_005 6UFG 0.4195 0 GNRA A RNA (166-MER) C 144 G 145 A 146 A 147 A 148 G 149 cWW
68 HL_6CZR_087 6CZR 0.3818 0 GNRA 1a SSU rRNA C 710 G 711 A 712 A 713 G 714 G 715 cWW
69 HL_5J7L_016 5J7L 0.3475 0 GNRA AA SSU rRNA C 726 G 727 A 728 A 729 G 730 G 731 cWW
70 HL_4LFB_016 4LFB 0.3963 0 GNRA A SSU rRNA C 726 G 727 A 728 A 729 G 730 G 731 cWW
71 HL_1G1X_005 1G1X 0.3768 0 GNRA J 16S RIBOSOMAL RNA C 726 G 727 A 728 A 729 G 730 G 731 cWW
72 HL_1G1X_003 1G1X 0.3863 0 GNRA E 16S RIBOSOMAL RNA C 726 G 727 A 728 A 729 G 730 G 731 cWW
73 HL_4OQU_004 4OQU 0.3410 0 GNRA A SAM-I-IV-variant C 76 G 77 A 78 G 79 A 80 G 81 cWW
74 HL_6SVS_001 6SVS 0.3210 0 GNRA A RNA (79-mer) C 26 G 27 A 28 A 29 A 30 G 31 cWW
75 HL_4V88_207 4V88 0.3716 0 GNRA A6 SSU rRNA C 937 G 938 A 939 A 940 A 941 G 942 cWW
76 HL_1G1X_004 1G1X 0.3912 0 GNRA I 16S RIBOSOMAL RNA C 590 G 591 A 592 A 593 A 594 G 649 cWW
77 HL_5J7L_164 5J7L 0.5640 0 GNRA DA LSU rRNA U 1222 G 1223 U 1224 G 1225 A 1226 G 1227 cWW
78 HL_6CZR_090 6CZR 0.2790 0 GNRA 1a SSU rRNA C 840 U 841 A 842 A 843 C 844 G 845 cWW ntSH
79 HL_5J7L_019 5J7L 0.2203 0 GNRA AA SSU rRNA C 862 U 863 A 864 A 865 C 866 G 867 cWW ntSH
80 HL_4LFB_019 4LFB 0.2050 0 GNRA A SSU rRNA C 862 U 863 A 864 A 865 C 866 G 867 cWW ntSH
81 HL_4P95_004 4P95 0.2051 0 GNRA A RNA (192-MER) C 317 U 318 A 319 A 320 C 321 G 322 cWW ntSH
82 HL_3PDR_001 3PDR 0.1807 0 GNRA X M-box riboswitch (ykoK leader) C 68 C 69 A 70 A 71 A 72 G 73 cWW ntSH
83 HL_5TBW_047 5TBW 0.2320 1 GNRA 1 LSU rRNA A 2164 G 2165 A 2166 A 2167 A 2168 U 2170 cWW ntSH
84 HL_6JDV_001 6JDV 0.2442 0 GNRA B CRISPR RNA direct repeat element G 48 G 49 A 50 A 51 A 52 C 53 cWW
85 HL_3D0U_004 3D0U 0.2216 0 GNRA A Lysine riboswitch C 142 G 143 A 144 A 145 A 146 G 147 cWW ntSH
86 HL_6JDV_002 6JDV 0.1831 0 GNRA B CRISPR RNA direct repeat element U 86 G 87 A 88 A 89 A 90 A 91 cWW tSH
87 HL_6CZR_091 6CZR 0.1732 0 GNRA 1a SSU rRNA C 875 G 876 C 877 A 878 A 879 G 880 cWW
88 HL_4V9F_048 4V9F 0.1999 0 GNRA 0 LSU rRNA C 1862 G 1863 C 1864 A 1865 A 1866 G 1867 cWW ntSH
89 HL_5J7L_020 5J7L 0.1925 0 GNRA AA SSU rRNA C 897 G 898 C 899 A 900 A 901 G 902 cWW ntSH
90 HL_4LFB_020 4LFB 0.1783 0 GNRA A SSU rRNA C 897 G 898 C 899 A 900 A 901 G 902 cWW ntSH
91 HL_4V88_211 4V88 0.1622 0 GNRA A6 SSU rRNA C 1121 G 1122 C 1123 A 1124 A 1125 G 1126 cWW ntSH
92 HL_3NVI_002 3NVI 0.1442 0 GNRA F RNA (24-mer) C 9 G 10 A 11 A 12 A 13 G 14 cWW ntSH
93 HL_3NMU_002 3NMU 0.1283 0 GNRA E RNA (34-MER) C 18 G 19 A 20 A 21 A 22 G 23 cWW ntSH
94 HL_5J7L_004 5J7L 0.1453 0 GNRA AA SSU rRNA C 186 G 187 C 188 A 189 A 190 G 191 cWW ntSH
95 HL_3AM1_007 3AM1 0.1735 0 GNRA B ASL-truncated tRNA C 45||||5_555 G 46||||5_555 A 47||||5_555 G 48||||5_555 A 49||||5_555 G 50||||5_555 cWW ntSH
96 HL_3AM1_003 3AM1 0.1735 0 GNRA B ASL-truncated tRNA C 45 G 46 A 47 G 48 A 49 G 50 cWW ntSH
97 HL_4V9F_054 4V9F 0.1512 0 GNRA 0 LSU rRNA C 2248 G 2249 G 2250 G 2251 A 2252 G 2253 cWW ntSH
98 HL_1RLG_002 1RLG 0.1159 0 GNRA D 25-MER C 9 G 10 A 11 A 12 A 13 G 14 cWW ntSH
99 HL_6N2V_002 6N2V 0.1283 0 GNRA A X. oryzae Mn riboswitch optimized construct C 56 G 57 A 58 A 59 A 60 G 61 cWW ntSH
100 HL_4Y1M_002 4Y1M 0.1532 0 GNRA B E. coli yybP-ykoY riboswitch C 24 G 25 A 26 A 27 A 28 G 29 cWW ntSH
101 HL_4V9F_072 4V9F 0.1624 0 GNRA 9 5S rRNA C 89 G 90 C 91 G 92 A 93 G 94 cWW ntSH
102 HL_5M0I_001 5M0I 0.1411 0 GNRA E ASH1-E3 element, RNA (28-MER) C 12 G 13 A 14 A 15 A 16 G 17 cWW ntSH
103 HL_5M0I_002 5M0I 0.1397 0 GNRA F ASH1-E3 element, RNA (28-MER) C 12 G 13 A 14 A 15 A 16 G 17 cWW ntSH
104 HL_5M0J_002 5M0J 0.1680 0 GNRA F ASH1 E3 (28 nt-loop) C 12 G 13 A 14 A 15 A 16 G 17 cWW ntSH
105 HL_5M0J_001 5M0J 0.1901 0 GNRA E ASH1 E3 (28 nt-loop) C 12 G 13 A 14 A 15 A 16 G 17 cWW ntSH
106 HL_4NLF_001 4NLF 0.1383 0 GNRA A 23S ribosomal RNA Sarcin Ricin Loop C 2658 G 2659 A 2660 G 2661 A 2662 G 2663 cWW ntSH
107 HL_6N2V_003 6N2V 0.1590 0 GNRA A X. oryzae Mn riboswitch optimized construct C 76 G 77 A 78 A 79 A 80 G 81 cWW ntSH
108 HL_1Q96_001 1Q96 0.1620 0 GNRA A sarcin/ricin 28S rRNA U 13 G 14 A 15 G 16 A 17 A 18 cWW ntSH
109 HL_3LQX_001 3LQX 0.1732 0 GNRA B SRP RNA C 153 G 154 A 155 A 156 A 157 G 158 cWW tSH
110 HL_4ENC_002 4ENC 0.1215 0 GNRA A Fluoride riboswitch U 28 G 29 A 30 A 31 A 32 A 33 cWW ntSH
111 HL_4R4V_004 4R4V 0.1188 0 GNRA A VS ribozyme RNA C 735 G 736 U 737 A 738 A 739 G 740 cWW ntSH
112 HL_4R4V_008 4R4V 0.1188 0 GNRA A VS ribozyme RNA C 735||||7_556 G 736||||7_556 U 737||||7_556 A 738||||7_556 A 739||||7_556 G 740||||7_556 cWW ntSH
113 HL_5TPY_012 5TPY 0.1031 0 GNRA A RNA (71-MER) C 62||||8_555 G 63||||8_555 A 64||||8_555 A 65||||8_555 A 66||||8_555 G 67||||8_555 cWW ntSH
114 HL_5TPY_006 5TPY 0.1031 0 GNRA A RNA (71-MER) C 62 G 63 A 64 A 65 A 66 G 67 cWW ntSH
115 HL_5TPY_009 5TPY 0.1031 0 GNRA A RNA (71-MER) C 62||||4_655 G 63||||4_655 A 64||||4_655 A 65||||4_655 A 66||||4_655 G 67||||4_655 cWW ntSH
116 HL_5TPY_003 5TPY 0.1031 0 GNRA A RNA (71-MER) C 62||||11_655 G 63||||11_655 A 64||||11_655 A 65||||11_655 A 66||||11_655 G 67||||11_655 cWW ntSH
117 HL_3MXH_001 3MXH 0.1108 0 GNRA R Cyclic di-GMP-I riboswitch C 31 G 32 A 33 A 34 A 35 G 36 cWW ntSH
118 HL_5TBW_013 5TBW 0.1561 0 GNRA 1 LSU rRNA C 599 G 600 U 601 A 602 A 603 G 604 cWW ntSH
119 HL_3IWN_001 3IWN 0.1250 0 GNRA A Cyclic di-GMP-I riboswitch C 21 G 22 A 23 A 24 A 25 G 26 cWW ntSH
120 HL_5J7L_010 5J7L 0.1260 0 GNRA AA SSU rRNA C 379 G 380 C 381 A 382 A 383 G 384 cWW ntSH
121 HL_4LFB_010 4LFB 0.1745 0 GNRA A SSU rRNA C 379 G 380 C 381 A 382 A 383 G 384 cWW ntSH
122 HL_7RQB_058 7RQB 0.1416 0 GNRA 1A LSU rRNA C 2374 G 2375 A 2376 A 2377 A 2378 G 2379 cWW ntSH
123 HL_5TPY_007 5TPY 0.1223 0 GNRA A RNA (71-MER) C 13||||4_655 G 14||||4_655 A 15||||4_655 A 16||||4_655 A 17||||4_655 G 18||||4_655 cWW ntSH
124 HL_5TPY_010 5TPY 0.1223 0 GNRA A RNA (71-MER) C 13||||8_555 G 14||||8_555 A 15||||8_555 A 16||||8_555 A 17||||8_555 G 18||||8_555 cWW ntSH
125 HL_5TPY_001 5TPY 0.1223 0 GNRA A RNA (71-MER) C 13||||11_655 G 14||||11_655 A 15||||11_655 A 16||||11_655 A 17||||11_655 G 18||||11_655 cWW ntSH
126 HL_5TPY_004 5TPY 0.1223 0 GNRA A RNA (71-MER) C 13 G 14 A 15 A 16 A 17 G 18 cWW ntSH
127 HL_4V9F_023 4V9F 0.0891 0 GNRA 0 LSU rRNA C 804 G 805 A 806 A 807 A 808 G 809 cWW ntSH
128 HL_5TBW_011 5TBW 0.0000 0 GNRA 1 LSU rRNA U 382 G 383 A 384 A 385 A 386 A 387 cWW ntSH
129 HL_5F9R_003 5F9R 0.1854 0 GNRA A tracrRNA U 90 G 91 A 92 A 93 A 94 A 95 cWW ntSH
130 HL_3KTW_002 3KTW 0.2052 0 GNRA C SRP RNA C 209 G 210 G 211 A 212 A 213 G 214 cWW ntSH
131 HL_4V9F_066 4V9F 0.1685 0 GNRA 0 LSU rRNA C 2695 G 2696 A 2697 G 2698 A 2699 G 2700 cWW ntSH
132 HL_5TBW_065 5TBW 0.1457 0 GNRA 1 LSU rRNA C 3025 G 3026 A 3027 G 3028 A 3029 G 3030 cWW ntSH
133 HL_7RQB_064 7RQB 0.1673 0 GNRA 1A LSU rRNA C 2658 G 2659 A 2660 G 2661 A 2662 G 2663 cWW tSH
134 HL_7A0S_063 7A0S 0.1902 0 GNRA X LSU rRNA C 2637 G 2638 A 2639 G 2640 A 2641 G 2642 cWW tSH
135 HL_5J7L_197 5J7L 0.1571 0 GNRA DA LSU rRNA C 2658 G 2659 A 2660 G 2661 A 2662 G 2663 cWW ntSH
136 HL_4WF9_060 4WF9 0.1904 0 GNRA X LSU rRNA C 2685 G 2686 A 2687 G 2688 A 2689 G 2690 cWW ntSH
137 HL_7RQB_046 7RQB 0.1572 0 GNRA 1A LSU rRNA C 1806 G 1807 U 1808 A 1809 A 1810 G 1811 cWW ntSH
138 HL_1MZP_001 1MZP 0.1653 0 GNRA B fragment of 23S rRNA C 25 G 26 C 27 A 28 A 29 G 30 cWW ntSH
139 HL_2EZ6_002 2EZ6 0.1695 0 GNRA D 28-MER C 11 G 12 C 13 A 14 A 15 G 16 cWW ntSH
140 HL_5TBW_017 5TBW 0.1490 0 GNRA 1 LSU rRNA C 732 G 733 C 734 A 735 A 736 G 737 cWW ntSH
141 HL_3NDB_002 3NDB 0.1509 0 GNRA M SRP RNA C 208 G 209 G 210 A 211 A 212 G 213 cWW tSH
142 HL_4RUM_002 4RUM 0.1261 0 GNRA A NiCo riboswitch C 51 G 52 A 53 A 54 A 55 G 56 cWW ntSH
143 HL_5B2P_001 5B2P 0.1351 0 GNRA B Guide RNA C 35 G 36 A 37 A 38 A 39 G 40 cWW tSH
144 HL_1G1X_001 1G1X 0.1262 0 GNRA D 16S RIBOSOMAL RNA C 590 G 591 A 592 A 593 A 594 G 649 cWW ntSH
145 HL_2OIU_001 2OIU 0.1286 0 GNRA P L1 Ribozyme RNA Ligase C 10 G 11 A 12 A 13 A 14 G 15 cWW ntSH
146 HL_4Y1M_003 4Y1M 0.1361 0 GNRA B E. coli yybP-ykoY riboswitch U 55 G 56 A 57 A 58 A 59 A 60 cWW ntSH
147 HL_5X2G_001 5X2G 0.1016 0 GNRA B sgRNA U 32 G 33 A 34 A 35 A 36 A 37 cWW ntSH
148 HL_5B2T_003 5B2T 0.1386 0 GNRA A tracrRNA U 72 G 73 A 74 A 75 A 76 A 77 cWW ntSH
149 HL_5Y7M_002 5Y7M 0.1257 0 GNRA D RNA (52-MER) C 24 G 25 A 26 A 27 A 28 G 29 cWW ntSH
150 HL_4PLX_001 4PLX 0.1221 0 GNRA A Core ENE hairpin and A-rich tract from MALAT1 C 24 G 25 A 26 A 27 A 28 G 29 cWW ntSH
151 HL_5UZ6_001 5UZ6 0.1028 0 GNRA A RNA (25-MER) C 15 G 16 A 17 A 18 A 19 G 20 cWW ntSH
152 HL_5VCI_001 5VCI 0.1493 0 GNRA A RNA (22-mer) C 16 G 17 A 18 A 19 A 20 G 21 cWW ntSH
153 HL_4JF2_001 4JF2 0.1434 0 GNRA A PreQ1-II Riboswitch C 8 G 9 A 10 A 11 A 12 G 13 cWW ntSH
154 HL_5D5L_001 5D5L 0.1435 0 GNRA A PreQ1-II riboswitch C 8 G 9 A 10 A 11 A 12 G 13 cWW ntSH
155 HL_4LFB_027 4LFB 0.1307 0 GNRA A SSU rRNA C 1165 G 1166 A 1167 A 1168 A 1169 G 1171 cWW ntSH
156 HL_4FRG_002 4FRG 0.1664 0 GNRA B Cobalamin riboswitch C 46 G 47 A 48 A 49 A 50 G 51 cWW ntSH
157 HL_6JQ5_004 6JQ5 0.1540 0 GNRA B Hatchet ribozyme C 45 G 46 A 47 A 48 A 49 G 50 cWW ntSH
158 HL_4BW0_001 4BW0 0.2000 0 GNRA A HMKT-7 C 9 G 10 A 11 A 12 A 13 G 14 cWW ntSH
159 HL_1KH6_002 1KH6 0.1530 0 GNRA A JIIIabc C 28 G 29 A 30 A 31 A 32 G 33 cWW ntSH
160 HL_2IL9_003 2IL9 0.1989 0 GNRA A CrPV IRES C 6119 G 6119|||A A 6119|||B A 6119|||C A 6119|||D G 6119|||E ncWW tSH
161 HL_6UFH_005 6UFH 0.1810 0 GNRA A RNA (167-MER) C 145 G 146 A 147 A 148 A 149 G 150 cWW ntSH
162 HL_4W90_003 4W90 0.1651 0 GNRA C cyclic di-AMP riboswitch C 82 G 83 A 84 A 85 A 86 G 87 cWW ntSH
163 HL_7RQB_016 7RQB 0.2170 0 GNRA 1A LSU rRNA C 487 G 488 G 489 G 491 A 492 G 493 cWW tSH
164 HL_7A0S_016 7A0S 0.2521 0 GNRA X LSU rRNA C 498 G 499 G 500 G 501 A 502 G 503 cWW ntSH
165 HL_4WF9_016 4WF9 0.2164 0 GNRA X LSU rRNA C 533 G 534 G 535 A 536 A 537 G 538 cWW ntSH
166 HL_3P22_001 3P22 0.2314 0 GNRA A Core ENE hairpin from KSHV PAN RNA C 17 G 18 A 19 A 20 A 21 G 22 cWW ntSH
167 HL_3CUL_001 3CUL 0.2284 0 GNRA C RNA (92-MER) C 7 G 8 A 9 A 10 A 11 G 12 cWW ntSH
168 HL_5TBW_023 5TBW 0.2086 1 GNRA 1 LSU rRNA C 1023 G 1024 A 1025 A 1026 A 1027 G 1029 cWW
169 HL_6CZR_078 6CZR 0.2411 0 GNRA 1a SSU rRNA U 292 G 293 A 294 G 295 A 296 G 297 cWW ntSH
170 HL_4K50_001 4K50 0.1848 0 GNRA B RNA (33-MER) U 587 G 588 A 589 A 590 A 591 G 592 cWW ntSH
171 HL_5M0H_001 5M0H 0.2437 0 GNRA A ASH1 E3 (42 nt-TL/TLR) U 21 G 22 A 23 A 24 A 25 G 26 cWW ntSH
172 HL_6WPI_001 6WPI 0.2203 0 GNRA B RNA (47-MER) U 25 G 26 A 27 A 28 A 29 G 30 cWW ntSH
173 HL_5BTM_001 5BTM 0.2315 0 GNRA A RNA (55-mer) U 26 G 27 A 28 A 29 A 30 G 31 cWW ntSH
174 HL_4PCJ_001 4PCJ 0.2238 0 GNRA A trCUG-3('5) U 16 G 17 A 18 A 19 A 20 G 21 cWW ntSH
175 HL_4K27_001 4K27 0.2223 0 GNRA U Myotonic Dystrophy Type 2 RNA U 26 G 27 A 28 A 29 A 30 G 31 cWW ntSH
176 HL_1KXK_001 1KXK 0.2158 0 GNRA A Group II catalytic intron U 33 G 34 A 35 A 36 A 37 G 38 cWW ntSH
177 HL_5J7L_007 5J7L 0.2803 0 GNRA AA SSU rRNA U 296 G 297 A 298 G 299 A 300 G 301 cWW ntSH
178 HL_4LFB_007 4LFB 0.2871 0 GNRA A SSU rRNA U 296 G 297 A 298 G 299 A 300 G 301 cWW ntSH
179 HL_3RG5_007 3RG5 0.3073 0 GNRA B Selenocysteine transfer RNA U 47|||C U 47|||D A 47|||E G 47|||F C 47|||G G 47|||H cWW ntSHa
180 HL_3RG5_011 3RG5 0.3073 0 GNRA B Selenocysteine transfer RNA U 47|||C|1_556 U 47|||D|1_556 A 47|||E|1_556 G 47|||F|1_556 C 47|||G|1_556 G 47|||H|1_556 cWW ntSHa
181 HL_4V9F_009 4V9F 0.2167 0 GNRA 0 LSU rRNA C 252 U 253 C 254 A 255 C 256 G 257 cWW ntSH
182 HL_4WF9_027 4WF9 0.2843 2 GNRA X LSU rRNA U 999 G 1000 A 1001 A 1003 A 1004 G 1006 cWW ntSH
183 HL_7RQB_027 7RQB 0.2484 2 GNRA 1A LSU rRNA C 955 G 956 A 957 A 959 A 960 G 962 cWW ntSH
184 HL_7A0S_026 7A0S 0.2765 2 GNRA X LSU rRNA A 966 G 967 C 968 A 970 A 971 U 973 cWW ntSH
185 HL_5TBW_025 5TBW 0.3022 1 GNRA 1 LSU rRNA G 1126 G 1127 U 1128 A 1129 A 1130 C 1132 cWW ntSH
186 HL_4V9F_028 4V9F 0.2258 1 GNRA 0 LSU rRNA G 1054 G 1055 U 1056 A 1057 A 1058 C 1060 cWW ntSH
187 HL_5FQ5_003 5FQ5 0.2709 0 GNRA A tracrRNA U 72 G 73 A 74 A 75 A 76 A 77 ncWW ntSH
188 HL_4V9F_020 4V9F 0.2375 0 GNRA 0 LSU rRNA G 690 G 691 A 692 A 693 A 694 C 695 cWW ntSH
189 HL_5DDP_001 5DDP 0.2140 0 GNRA A glnA G 11 G 12 A 13 A 14 A 15 C 16 cWW ntSH
190 HL_3E5C_001 3E5C 0.2512 0 GNRA A SAM-III riboswitch aptamer (SMK box) G 18 G 19 A 20 A 21 A 22 C 23 cWW tSH
191 HL_4V9F_070 4V9F 0.2646 0 GNRA 0 LSU rRNA G 2876 G 2877 U 2878 A 2879 A 2880 C 2881 cWW ntSH
192 HL_1MFQ_002 1MFQ 0.2654 0 GNRA A SRP RNA G 197 G 198 A 199 A 200 A 201 C 202 cWW tSH
193 HL_4AOB_002 4AOB 0.2093 0 GNRA A SAM-I riboswitch A 49 A 50 A 51 A 52 A 53 U 54 cWW tSH
194 HL_4AOB_005 4AOB 0.2093 0 GNRA A SAM-I riboswitch A 49||||7_555 A 50||||7_555 A 51||||7_555 A 52||||7_555 A 53||||7_555 U 54||||7_555 cWW tSH
195 HL_4ZT0_004 4ZT0 0.2309 0 GNRA D tracrRNA A 32 G 33 A 34 A 35 A 36 U 37 cWW ntSH
196 HL_1NBS_007 1NBS 0.2559 0 GNRA B RNase P class B A 204 G 205 A 206 A 207 A 208 U 209 cWW ntSH
197 HL_3V7E_003 3V7E 0.2273 0 GNRA C SAM-I riboswitch G 105 G 106 A 107 A 108 A 109 C 110 cWW ntSH
198 HL_1U6B_001 1U6B 0.2304 0 GNRA B 197-MER G 23 G 24 A 25 A 26 A 27 C 28 cWW ntSH
199 HL_5DDO_001 5DDO 0.2156 0 GNRA A L-glutamine riboswitch (58-MER) G 11 G 12 A 13 A 14 A 15 C 16 cWW
200 HL_3RW6_001 3RW6 0.2698 0 GNRA H constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA G 27 G 28 A 29 A 30 A 31 C 32 cWW tSH
201 HL_3MOJ_001 3MOJ 0.2431 0 GNRA A LSU rRNA G 2529 G 2530 A 2531 A 2532 A 2533 C 2534 cWW ntSH
202 HL_5XTM_002 5XTM 0.2757 0 GNRA D RNA (47-MER) G 24 G 25 A 26 A 27 A 28 C 29 cWW ntSH
203 HL_5XTM_001 5XTM 0.2680 0 GNRA B RNA (47-MER) G 24 G 25 A 26 A 27 A 28 C 29 cWW ntSH
204 HL_5DCV_002 5DCV 0.2769 0 GNRA D RNA (47-MER) G 26 G 27 A 28 A 29 A 30 C 31 cWW ntSH
205 HL_6DVK_001 6DVK 0.2140 0 GNRA H RNA (95-MER) G 45 G 46 A 47 A 48 A 49 C 50 cWW ntSH
206 HL_3IGI_006 3IGI 0.2151 0 GNRA A Group II catalytic intron D1-D4-3 G 274 G 275 A 276 A 277 A 278 C 279 cWW ntSH
207 HL_2R8S_001 2R8S 0.2272 0 GNRA R P4-P6 RNA RIBOZYME DOMAIN G 149 G 150 A 151 A 152 A 153 C 154 cWW ntSH
208 HL_4AOB_006 4AOB 0.1901 0 GNRA A SAM-I riboswitch G 73||||7_555 G 74||||7_555 A 75||||7_555 A 76||||7_555 A 77||||7_555 C 78||||7_555 cWW ntSH
209 HL_4AOB_003 4AOB 0.1901 0 GNRA A SAM-I riboswitch G 73 G 74 A 75 A 76 A 77 C 78 cWW ntSH
210 HL_5FJC_003 5FJC 0.2041 0 GNRA A SAM-I riboswitch G 73 G 74 A 75 A 76 A 77 C 78 cWW ntSH
211 HL_5FJC_002 5FJC 0.1937 0 GNRA A SAM-I riboswitch A 49 G 50 A 51 A 52 A 53 U 54 cWW ntSH
212 HL_4OQU_003 4OQU 0.2169 0 GNRA A SAM-I-IV-variant G 57 G 58 A 59 G 60 A 61 C 62 cWW ntSH
213 HL_1L9A_002 1L9A 0.2316 0 GNRA B SRP RNA G 197 G 198 A 199 A 200 A 201 C 202 cWW ntSH
214 HL_5TBW_019 5TBW 0.2331 0 GNRA 1 LSU rRNA G 844 G 845 A 846 A 847 A 848 C 849 cWW ntSH
215 HL_5J7L_003 5J7L 0.2378 0 GNRA AA SSU rRNA G 158 G 159 A 160 A 161 A 162 C 163 cWW ntSH
216 HL_4LFB_003 4LFB 0.2618 0 GNRA A SSU rRNA G 158 G 159 A 160 A 161 A 162 C 163 cWW ntSH
217 HL_4V9F_040 4V9F 0.2168 0 GNRA 0 LSU rRNA G 1628 G 1629 A 1630 A 1631 A 1632 C 1633 cWW ntSH
218 HL_6CZR_074 6CZR 0.3175 0 GNRA 1a SSU rRNA G 153 G 154 A 155 A 156 A 157 C 158 ncWW ntSH
219 HL_4Y1M_004 4Y1M 0.2346 0 GNRA B E. coli yybP-ykoY riboswitch A 81 G 82 A 83 A 84 A 85 U 86 cWW ntSH
220 HL_5TBW_048 5TBW 0.2267 0 GNRA 1 LSU rRNA A 2220 G 2221 A 2222 A 2223 A 2224 U 2225 cWW
221 HL_4V88_210 4V88 0.1933 0 GNRA A6 SSU rRNA A 1084 G 1085 A 1086 A 1087 A 1088 U 1089 cWW
222 HL_5VW1_001 5VW1 0.1458 0 GNRA C tracrRNA A 32 G 33 A 34 A 35 A 36 U 37 cWW
223 HL_6UFH_002 6UFH 0.1865 0 GNRA A RNA (167-MER) G 45 G 46 A 47 A 48 A 49 C 50 cWW ntSH
224 HL_6JOO_001 6JOO 0.1510 0 GNRA B Guide RNA G 32 G 33 A 34 A 35 A 36 C 37 cWW ntSH
225 HL_1UN6_004 1UN6 0.1584 0 GNRA F 5S RIBOSOMAL RNA G 82 G 83 A 84 A 85 A 86 C 94 cWW ntSH
226 HL_5TBW_186 5TBW 0.1884 0 GNRA AS 5S rRNA G 88 G 89 U 90 G 91 A 92 C 93 cWW ntSH
227 HL_5F9F_003 5F9F 0.2344 0 GNRA F RNA (24-mer) A 10 G 11 U 12 G 13 A 14 U 15 cWW
228 HL_4OQU_001 4OQU 0.2017 0 GNRA A SAM-I-IV-variant G 13 G 14 A 15 G 16 A 17 C 18 ncWW
229 HL_6CB3_005 6CB3 0.2227 0 GNRA B RNA (99-MER) G 50 G 51 A 52 A 53 A 54 C 55 cWW
230 HL_6U8D_002 6U8D 0.1770 0 GNRA A JIIIabc RNA (68-MER) G 180 G 198 A 199 A 200 A 201 C 219 cWW
231 HL_6N2V_001 6N2V 0.1649 0 GNRA A X. oryzae Mn riboswitch optimized construct G 24 G 25 A 26 A 27 A 28 C 29 cWW
232 HL_5B2T_001 5B2T 0.1546 0 GNRA A tracrRNA A 32 G 33 A 34 A 35 A 36 U 37 cWW
233 HL_5J7L_152 5J7L 0.1942 0 GNRA DA LSU rRNA G 629 G 630 A 631 A 632 A 633 C 634 cWW
234 HL_7RQB_020 7RQB 0.2233 0 GNRA 1A LSU rRNA G 629 G 630 A 631 A 632 A 633 C 634 cWW
235 HL_7A0S_057 7A0S 0.2217 0 GNRA X LSU rRNA G 2353 G 2354 A 2355 A 2356 A 2357 C 2358 cWW
236 HL_1U9S_004 1U9S 0.2265 0 GNRA A RNase P class A G 204 G 205 C 206 A 207 A 208 C 209 cWW ntSH
237 HL_5FQ5_001 5FQ5 0.2576 0 GNRA A tracrRNA A 32 G 33 A 34 A 35 A 36 U 37 cWW
238 HL_1U9S_002 1U9S 0.2499 0 GNRA A RNase P class A G 99 G 100 U 101 A 102 A 103 C 104 cWW ntSH
239 HL_7A0S_068 7A0S 0.2537 0 GNRA X LSU rRNA A 2831 G 2832 C 2833 A 2834 A 2835 U 2836 cWW ntSH
240 HL_5J7L_202 5J7L 0.2469 0 GNRA DA LSU rRNA A 2856 G 2857 C 2858 G 2859 A 2860 U 2861 cWW
241 HL_4LFB_028 4LFB 0.2619 0 GNRA A SSU rRNA G 1265 G 1266 C 1267 A 1268 A 1269 C 1270 cWW
242 HL_4WF9_065 4WF9 0.2993 0 GNRA X LSU rRNA G 2876 G 2877 U 2878 G 2879 A 2880 C 2881 cWW
243 HL_3IGI_003 3IGI 0.2782 0 GNRA A Group II catalytic intron D1-D4-3 G 89 G 90 C 91 G 92 A 93 C 94 cWW
244 HL_2Z75_004 2Z75 0.3104 0 GNRA B glmS ribozyme G 113 G 114 C 115 G 116 A 117 C 118 cWW
245 HL_3G9C_008 3G9C 0.2434 0 GNRA Q glmS ribozyme G 108 G 109 U 110 G 111 A 112 C 113 cWW
246 HL_4WFL_003 4WFL 0.2451 0 GNRA A LSRP RNA G 81 G 82 U 83 A 84 A 85 C 86 cWW
247 HL_5TBW_010 5TBW 0.2746 0 GNRA 1 LSU rRNA A 357 G 358 U 359 G 360 A 361 U 362 cWW
248 HL_4V88_214 4V88 0.3146 0 GNRA A6 SSU rRNA A 1296 G 1297 U 1298 G 1299 A 1300 U 1301 cWW
249 HL_5TBW_036 5TBW 0.3615 0 GNRA 1 LSU rRNA G 1634 G 1635 U 1636 A 1637 A 1638 C 1639 cWW
250 HL_7RQB_071 7RQB 0.2673 0 GNRA 1B 5S rRNA G 86 G 87 C 88 G 89 A 90 C 91 cWW
251 HL_6CZR_081 6CZR 0.2315 0 GNRA 1a SSU rRNA C 375 G 376 C 377 A 378 A 379 G 380 cWW
252 HL_7A0S_047 7A0S 0.2991 0 GNRA X LSU rRNA U 1856 G 1857 C 1858 A 1859 A 1860 G 1861 cWW
253 HL_4V9F_045 4V9F 0.2195 1 GNRA 0 LSU rRNA C 1793 G 1794 G 1795 A 1796 A 1797 G 1799 cWW
254 HL_6CZR_098 6CZR 0.2939 0 GNRA 1a SSU rRNA C 1148 G 1149 A 1150 A 1151 A 1152 G 1153 cWW ntSH
255 HL_4LFB_022 4LFB 0.3334 0 GNRA A SSU rRNA U 1012 G 1013 A 1014 A 1015 A 1016 G 1017 cWW ntSH
256 HL_4V9F_036 4V9F 0.4779 1 GNRA 0 LSU rRNA G 1468 C 1469 A 1470 A 1471 C 1472 C 1474 cWW tSHa
257 HL_7A0S_005 7A0S 0.3559 0 GNRA X LSU rRNA C 146 G 147 C 148 A 149 A 150 G 151 cWW ntSH
258 HL_4V88_188 4V88 0.5398 1 GNRA related A6 SSU rRNA G 154 U 155 A 156 A 157 U 158 C 160 cWW
259 HL_1U6B_004 1U6B 0.4514 0 GNRA variation B 197-MER C 153 A 154 A 155 A 156 C 157 G 158 cWW
260 HL_4QK9_001 4QK9 0.4495 0 GNRA variation A cyclic di-AMP riboswitch C 14 U 15 G 16 A 17 A 18 G 19 cWW
261 HL_5TBW_033 5TBW 0.4458 0 GNRA variation 1 LSU rRNA G 1544 A 1545 A 1546 G 1547 C 1548 U 1549 cWW
262 HL_4V88_222 4V88 0.5512 0 GNRA variation A6 SSU rRNA G 1778 U 1779 G 1780 A 1781 A 1782 C 1783 cWW
263 HL_7A0S_034 7A0S 0.6173 0 GNRA variation X LSU rRNA C 1376 G 1377 A 1378 A 1379 C 1380 G 1381 cWW
264 HL_7RQB_035 7RQB 0.4739 0 GNRA 1A LSU rRNA C 1363 G 1364 A 1365 A 1366 A 1367 G 1368 cWW
265 HL_5J7L_167 5J7L 0.4786 0 GNRA DA LSU rRNA C 1363 G 1364 A 1365 A 1366 A 1367 G 1368 cWW
266 HL_4WF9_034 4WF9 0.5172 0 GNRA X LSU rRNA C 1400 G 1401 A 1402 C 1403 A 1404 G 1405 cWW
267 HL_6MJ0_008 6MJ0 0.5643 0 GNRA with GA tSW pair B tRNA-like 3' UTR element C 49 G 50 A 51 A 52 A 53 G 54 cWW
268 HL_4ZT0_006 4ZT0 0.5178 0 GNRA with GA tSW pair D tracrRNA U 72 G 73 A 74 A 75 A 76 A 77 cWW
269 HL_5VW1_003 5VW1 0.5196 0 GNRA with GA tSW pair C tracrRNA U 72 G 73 A 74 A 75 A 76 A 77 cWW ntsS
270 HL_5DDO_003 5DDO 0.5693 0 GNRA with GA tSW pair B L-glutamine riboswitch (58-MER) G 11 G 12 A 13 A 14 A 15 C 16 cWW
271 HL_4V9F_022 4V9F 0.6284 0 GNRA 0 LSU rRNA U 733 U 734 C 735 A 736 A 737 G 738 cWW
272 HL_5J7L_180 5J7L 0.7143 0 GNRA variation DA LSU rRNA C 1868 G 1869 C 1870 A 1871 A 1872 G 1873 cWW
273 HL_5TBW_039 5TBW 0.7004 0 GNRA related 1 LSU rRNA A 1760 C 1761 C 1762 U 1763 U 1764 U 1765
