5JPQ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5JPQ_023 | No text annotation | ||
| HL_5JPQ_001 | No text annotation | ||
| HL_5JPQ_002 | GNRA related | ||
| HL_5JPQ_003 | No text annotation | ||
| HL_5JPQ_004 | T-loop with 1 bulged base | ||
| HL_5JPQ_005 | Mini UNCG | ||
| HL_5JPQ_006 | GNRA related | ||
| HL_5JPQ_007 | No text annotation | ||
| HL_5JPQ_025 | GNRA variation | ||
| HL_5JPQ_008 | No text annotation | ||
| HL_5JPQ_009 | UNCG | ||
| HL_5JPQ_010 | No text annotation | ||
| HL_5JPQ_011 | Externally structured | ||
| HL_5JPQ_012 | No text annotation | ||
| HL_5JPQ_013 | No text annotation | ||
| HL_5JPQ_014 | GNRA | ||
| HL_5JPQ_015 | No text annotation | ||
| HL_5JPQ_024 | No text annotation | ||
| HL_5JPQ_016 | GNRA | ||
| HL_5JPQ_017 | No text annotation | ||
| HL_5JPQ_018 | Externally structured | ||
| HL_5JPQ_019 | No text annotation | ||
| HL_5JPQ_020 | No text annotation | ||
| HL_5JPQ_021 | No text annotation | ||
| HL_5JPQ_022 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5JPQ_037 | No text annotation | ||
| IL_5JPQ_001 | No text annotation | ||
| IL_5JPQ_038 | No text annotation | ||
| IL_5JPQ_047 | No text annotation | ||
| IL_5JPQ_002 | No text annotation | ||
| IL_5JPQ_003 | No text annotation | ||
| IL_5JPQ_039 | No text annotation | ||
| IL_5JPQ_048 | No text annotation | ||
| IL_5JPQ_004 | Multiple bulged bases | ||
| IL_5JPQ_005 | No text annotation | ||
| IL_5JPQ_006 | tWH-tWH-tHW-tHW | ||
| IL_5JPQ_007 | Isolated non-canonical cWW contact | ||
| IL_5JPQ_008 | No text annotation | ||
| IL_5JPQ_040 | Double sheared | ||
| IL_5JPQ_009 | No text annotation | ||
| IL_5JPQ_041 | No text annotation | ||
| IL_5JPQ_010 | No text annotation | ||
| IL_5JPQ_011 | No text annotation | ||
| IL_5JPQ_012 | Kink-turn with non-sequential stacking | ||
| IL_5JPQ_013 | No text annotation | ||
| IL_5JPQ_042 | No text annotation | ||
| IL_5JPQ_014 | No text annotation | ||
| IL_5JPQ_015 | No text annotation | ||
| IL_5JPQ_016 | Isolated near basepair | ||
| IL_5JPQ_017 | C-loop | ||
| IL_5JPQ_018 | Single bulged G | ||
| IL_5JPQ_049 | No text annotation | ||
| IL_5JPQ_019 | Self complementary | ||
| IL_5JPQ_043 | No text annotation | ||
| IL_5JPQ_020 | Isolated non-canonical cWW pair | ||
| IL_5JPQ_021 | Isolated non-canonical cWW pair | ||
| IL_5JPQ_044 | tSH-tHW-tHS | ||
| IL_5JPQ_022 | No text annotation | ||
| IL_5JPQ_023 | No text annotation | ||
| IL_5JPQ_024 | Major groove platform; stack outside cWW | ||
| IL_5JPQ_025 | Triple non-canonical cWW pairs | ||
| IL_5JPQ_045 | No text annotation | ||
| IL_5JPQ_050 | Isolated non-canonical cWW pair | ||
| IL_5JPQ_026 | Isolated non-canonical cWW pair | ||
| IL_5JPQ_027 | Tandem non-canonical cWW pairs | ||
| IL_5JPQ_028 | Tandem non-canonical cWW pairs | ||
| IL_5JPQ_029 | Kink-turn related | ||
| IL_5JPQ_030 | No text annotation | ||
| IL_5JPQ_031 | No text annotation | ||
| IL_5JPQ_032 | No text annotation | ||
| IL_5JPQ_033 | Isolated non-canonical cWW pair | ||
| IL_5JPQ_034 | No text annotation | ||
| IL_5JPQ_046 | No text annotation | ||
| IL_5JPQ_035 | No text annotation | ||
| IL_5JPQ_036 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5JPQ_001 | No text annotation | ||
| J3_5JPQ_006 | No text annotation | ||
| J3_5JPQ_002 | No text annotation | ||
| J3_5JPQ_007 | No text annotation | ||
| J3_5JPQ_003 | No text annotation | ||
| J3_5JPQ_004 | No text annotation | ||
| J3_5JPQ_005 | No text annotation | ||
| J3_5JPQ_008 | No text annotation | ||
| J4_5JPQ_003 | No text annotation | ||
| J4_5JPQ_001 | No text annotation | ||
| J4_5JPQ_002 | No text annotation | ||
| J5_5JPQ_001 | No text annotation |
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