Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8CGU_0011/A/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_8CGU_0021/A/77:92No text annotation
Not in a motif group
HL_8CGU_0031/A/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_8CGU_0041/A/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_8CGU_0051/A/202:215No text annotation
Not in a motif group
HL_8CGU_0061/A/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_8CGU_0071/A/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_8CGU_0081/A/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_8CGU_0091/A/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_8CGU_0101/A/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_8CGU_0111/A/418:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_8CGU_0121/A/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_8CGU_0131/A/521:528No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_10278.1
HL_8CGU_0141/A/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_8CGU_0151/A/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_8CGU_0161/A/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_8CGU_0171/A/786:796No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_8CGU_0181/A/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.1
HL_8CGU_0191/A/897:902GNRA
Not in a motif group
homologous
HL_5J7L_020
HL_42097.1
HL_8CGU_0201/A/927:1390No text annotation
Not in a motif group
HL_8CGU_0211/A/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_8CGU_0221/A/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_8CGU_0231/a/1910:1920No text annotation
Not in a motif group
homologous
HL_5J7L_181
NA

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8CGU_0011/A/30:32,
1/A/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.2
IL_8CGU_0021/A/44:45,
1/A/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_8CGU_0031/A/47:52,
1/A/359:361
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_11178.1
IL_8CGU_0041/A/54:56,
1/A/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_8CGU_0051/A/63:66,
1/A/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_8CGU_0061/A/67:69,
1/A/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_8CGU_0071/A/70:73,
1/A/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_8CGU_0081/A/75:76,
1/A/93:95
Single bulged G
Not in a motif group
geometric
IL_5DEA_002
IL_00225.2
IL_8CGU_0091/A/128:131,
1/A/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_8CGU_0101/A/132:136,
1/A/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_8CGU_0111/A/144:146,
1/A/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_8CGU_0121/A/147:153,
1/A/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_8CGU_0131/A/242:247,
1/A/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_8CGU_0141/A/249:252,
1/A/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_8CGU_0151/A/292:293,
1/A/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_8CGU_0161/A/367:369,
1/A/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.13
IL_8CGU_0171/A/371:375,
1/A/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_8CGU_0181/A/375:376,
1/A/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_8CGU_0191/A/409:415,
1/A/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_8CGU_0201/A/440:442,
1/A/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_8CGU_0211/A/446:450,
1/A/483:488
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_8CGU_0221/A/450:455,
1/A/477:483
No text annotation
Not in a motif group
homologous
IL_5J7L_023
IL_70801.1
IL_8CGU_0231/A/504:511,
1/A/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_8CGU_0241/A/515:521,
1/A/528:536
No text annotation
Not in a motif group
homologous
IL_4LFB_021
NA
IL_8CGU_0251/A/580:584,
1/A/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_8CGU_0261/A/594:596,
1/A/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_8CGU_0271/A/597:598,
1/A/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_8CGU_0281/A/605:612,
1/A/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_8CGU_0291/A/654:655,
1/A/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_8CGU_0301/A/658:660,
1/A/745:748
No text annotation
Not in a motif group
geometric
IL_4P3T_002
IL_46796.1
IL_8CGU_0311/A/662:666,
1/A/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_8CGU_0321/A/673:678,
1/A/712:717
No text annotation
Not in a motif group
homologous
IL_5J7L_034
IL_04668.1
IL_8CGU_0331/A/684:688,
1/A/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_8CGU_0341/A/774:778,
1/A/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_8CGU_0351/A/779:783,
1/A/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_8CGU_0361/A/887:894,
1/A/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_8CGU_0371/A/922:923,
1/A/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.2
IL_8CGU_0381/A/925:927,
1/A/1390:1391
Single bulged G
Not in a motif group
geometric
IL_5J7L_040
IL_00225.2
IL_8CGU_0391/A/1399:1401,
1/A/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_8CGU_0401/A/1401:1404,
1/A/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_8CGU_0411/A/1405:1409,
1/A/1491:1496
No text annotation
Not in a motif group
homologous
IL_4LFB_058
NA
IL_8CGU_0421/A/1412:1414,
1/A/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_8CGU_0431/A/1416:1419,
1/A/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_8CGU_0441/A/1430:1435,
1/A/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_8CGU_0451/A/1440:1442,
1/A/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_8CGU_0461/A/1445:1448,
1/A/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8CGU_0011/A/826:829,
1/A/857:861,
1/A/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA

Problematic loops

No problematic loops


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