1XMO Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/A/190B:190G | NA | NA | ||
1/A/450:483 | NA | NA | ||
1/A/522:527 | NA | NA | ||
1/A/617:623 | NA | NA | ||
1/A/689:698 | NA | NA | ||
1/A/838:848 | NA | NA | ||
1/A/963:972 | NA | NA | ||
1/A/1124:1149 | NA | NA | ||
1/A/1165:1171 | NA | NA | ||
1/A/1515:1520 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_1XMO_001 | NA | ||
HL_1XMO_002 | NA | ||
HL_1XMO_003 | NA | ||
HL_1XMO_005 | NA | ||
HL_1XMO_006 | NA | ||
HL_1XMO_007 | NA | ||
HL_1XMO_008 | NA | ||
HL_1XMO_009 | NA | ||
HL_1XMO_010 | NA | ||
HL_1XMO_015 | NA | ||
HL_1XMO_016 | NA | ||
HL_1XMO_018 | NA | ||
HL_1XMO_019 | NA | ||
HL_1XMO_021 | NA | ||
HL_1XMO_022 | NA | ||
HL_1XMO_023 | NA | ||
HL_1XMO_024 | NA | ||
HL_1XMO_027 | NA | ||
HL_1XMO_028 | NA | ||
HL_1XMO_029 | NA | ||
HL_1XMO_030 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/A/30:32, 1/A/552:553 | NA | NA | ||
1/A/47:52, 1/A/359:361 | NA | NA | ||
1/A/54:56, 1/A/356:357 | NA | NA | ||
1/A/132:136, 1/A/227:230 | NA | NA | ||
1/A/186:188, 1/A/190K:191 | NA | NA | ||
1/A/189:190A, 1/A/190H:190J | NA | NA | ||
1/A/242:247, 1/A/277:284 | NA | NA | ||
1/A/292:293, 1/A/304:308 | NA | NA | ||
1/A/446:450, 1/A/483:488 | NA | NA | ||
1/A/514:521, 1/A/528:537 | NA | NA | ||
1/A/605:612, 1/A/628:633 | NA | NA | ||
1/A/662:666, 1/A/740:743 | NA | NA | ||
1/A/925:927, 1/A/1390:1391 | NA | NA | ||
1/A/1052:1056, 1/A/1204:1206 | NA | NA | ||
1/A/1056:1058, 1/A/1199:1204 | NA | NA | ||
1/A/1247:1253, 1/A/1284:1290 | NA | NA | ||
1/A/1255:1258, 1/A/1277:1282 | NA | NA | ||
1/A/1399:1401, 1/A/1501:1504 | NA | NA | ||
1/A/1401:1404, 1/A/1497:1501 | NA | NA | ||
1/A/1405:1407, 1/A/1494:1496 | NA | NA | ||
1/A/1407:1409, 1/A/1491:1494 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_1XMO_002 | NA | ||
IL_1XMO_005 | NA | ||
IL_1XMO_006 | NA | ||
IL_1XMO_007 | NA | ||
IL_1XMO_009 | NA | ||
IL_1XMO_013 | NA | ||
IL_1XMO_015 | NA | ||
IL_1XMO_016 | NA | ||
IL_1XMO_017 | NA | ||
IL_1XMO_019 | NA | ||
IL_1XMO_021 | NA | ||
IL_1XMO_022 | NA | ||
IL_1XMO_023 | NA | ||
IL_1XMO_024 | NA | ||
IL_1XMO_026 | NA | ||
IL_1XMO_027 | NA | ||
IL_1XMO_029 | NA | ||
IL_1XMO_030 | NA | ||
IL_1XMO_031 | NA | ||
IL_1XMO_032 | NA | ||
IL_1XMO_033 | NA | ||
IL_1XMO_034 | NA | ||
IL_1XMO_036 | NA | ||
IL_1XMO_037 | NA | ||
IL_1XMO_038 | NA | ||
IL_1XMO_039 | NA | ||
IL_1XMO_040 | NA | ||
IL_1XMO_041 | NA | ||
IL_1XMO_044 | NA | ||
IL_1XMO_045 | NA | ||
IL_1XMO_046 | NA | ||
IL_1XMO_049 | NA | ||
IL_1XMO_050 | NA | ||
IL_1XMO_055 | NA | ||
IL_1XMO_056 | NA | ||
IL_1XMO_057 | NA | ||
IL_1XMO_058 | NA | ||
IL_1XMO_059 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/A/826:829, 1/A/857:861, 1/A/868:874 | NA | NA | ||
1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | NA | NA | ||
1/A/955:962, 1/A/973:984, 1/A/1221:1225 | NA | NA | ||
1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | NA | NA | ||
1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | NA | NA | ||
1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_1XMO_003 | NA | ||
J3_1XMO_005 | NA | ||
J3_1XMO_006 | NA |
Coloring options: