6W7M | Motifs

Valid loops

#	loop id	location	motif
1	IL_6W7M_001 ➜	1/A/30:32,1/A/552:553	NA
2	IL_6W7M_002 ➜	1/A/44:45,1/A/396:398	NA
3	IL_6W7M_003 ➜	1/A/47:52,1/A/359:361	NA
4	IL_6W7M_004 ➜	1/A/54:56,1/A/356:357	NA
5	IL_6W7M_005 ➜	1/A/63:66,1/A/103:104	NA
6	IL_6W7M_006 ➜	1/A/67:69,1/A/99:102	NA
7	IL_6W7M_008 ➜	1/A/75:76,1/A/93:95	NA
8	IL_6W7M_009 ➜	1/A/128:131,1/A/231:233	NA
9	IL_6W7M_010 ➜	1/A/132:136,1/A/227:230	NA
10	IL_6W7M_011 ➜	1/A/144:146,1/A/176:178	NA
11	IL_6W7M_012 ➜	1/A/147:153,1/A/168:175	NA
12	IL_6W7M_014 ➜	1/A/242:247,1/A/277:284	NA
13	IL_6W7M_015 ➜	1/A/249:252,1/A/274:275	NA
14	IL_6W7M_016 ➜	1/A/292:293,1/A/304:308	NA
15	IL_6W7M_017 ➜	1/A/367:369,1/A/392:393	NA
16	IL_6W7M_018 ➜	1/A/371:375,1/A/389:390	NA
17	IL_6W7M_019 ➜	1/A/375:377,1/A/386:389	NA
18	IL_6W7M_020 ➜	1/A/409:416,1/A/427:433	NA
19	IL_6W7M_022 ➜	1/A/446:450,1/A/483:488	NA
20	IL_6W7M_023 ➜	1/A/450:455,1/A/477:483	NA
21	IL_6W7M_024 ➜	1/A/504:511,1/A/540:541	NA
22	IL_6W7M_025 ➜	1/A/515:521,1/A/528:536	NA
23	IL_6W7M_026 ➜	1/A/569:575,1/A/880:881	NA
24	IL_6W7M_027 ➜	1/A/580:584,1/A/757:761	NA
25	IL_6W7M_028 ➜	1/A/594:596,1/A/644:645	NA
26	IL_6W7M_029 ➜	1/A/597:598,1/A/640:643	NA
27	IL_6W7M_030 ➜	1/A/605:612,1/A/628:633	NA
28	IL_6W7M_031 ➜	1/A/654:655,1/A/751:754	NA
29	IL_6W7M_032 ➜	1/A/658:659,1/A/746:748	NA
30	IL_6W7M_033 ➜	1/A/662:667,1/A/739:743	NA
31	IL_6W7M_034 ➜	1/A/673:678,1/A/712:717	NA
32	IL_6W7M_036 ➜	1/A/774:779,1/A/803:805	NA
33	IL_6W7M_038 ➜	1/A/887:895,1/A/904:910	NA
34	IL_6W7M_039 ➜	1/A/933:935,1/A/1380:1384	NA
35	IL_6W7M_040 ➜	1/A/953:954,1/A/1226:1228	NA
36	IL_6W7M_041 ➜	1/A/993:997,1/A/1044:1045	NA
37	IL_6W7M_042 ➜	1/A/998:999,1/A/1041:1043	NA
38	IL_6W7M_043 ➜	1/A/1048:1050,1/A/1208:1209	NA
39	IL_6W7M_044 ➜	1/A/1051:1056,1/A/1204:1207	NA
40	IL_6W7M_045 ➜	1/A/1057:1058,1/A/1199:1203	NA
41	IL_6W7M_046 ➜	1/A/1060:1061,1/A/1195:1197	NA
42	IL_6W7M_047 ➜	1/A/1061:1063,1/A/1193:1195	NA
43	IL_6W7M_048 ➜	1/A/1124:1128,1/A/1144:1149	NA
44	IL_6W7M_049 ➜	1/A/1129:1132,1/A/1142:1143	NA
45	IL_6W7M_050 ➜	1/A/1247:1253,1/A/1284:1290	NA
46	IL_6W7M_051 ➜	1/A/1255:1258,1/A/1277:1282	NA
47	IL_6W7M_052 ➜	1/A/1259:1263,1/A/1272:1276	NA
48	IL_6W7M_053 ➜	1/A/1303:1309,1/A/1328:1334	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_6W7M_007 ➜	missing nts	70, 71, 72, 73, 97, 98
2	IL_6W7M_013 ➜	missing nts	203, 204, 205, 206, 213, 214
3	IL_6W7M_021 ➜	missing nts	440, 441, 442, 492, 493, 494, 495, 496, 497
4	IL_6W7M_035 ➜	missing nts	682, 683, 684, 685, 686, 687, 688, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708
5	IL_6W7M_037 ➜	missing nts	779, 780, 781, 782, 783, 799, 800, 801, 802, 803
6	IL_6W7M_054 ➜	missing nts	1412, 1413, 1414, 1486, 1487, 1488
7	IL_6W7M_055 ➜	missing nts	1416, 1417, 1418, 1419, 1420, 1480, 1481, 1482, 1483, 1484
8	IL_6W7M_056 ➜	missing nts	1430, 1431, 1432, 1433, 1434, 1435, 1466, 1467, 1468, 1469, 1470
9	IL_6W7M_057 ➜	missing nts	1440, 1441, 1442, 1460, 1461
10	IL_6W7M_058 ➜	missing nts	1445, 1446, 1447, 1448, 1455, 1456, 1457

Valid loops

#	loop id	location	motif
1	HL_6W7M_001 ➜	1/A/12:22	NA
2	HL_6W7M_003 ➜	1/A/158:163	NA
3	HL_6W7M_004 ➜	1/A/186:191	NA
4	HL_6W7M_006 ➜	1/A/259:267	NA
5	HL_6W7M_007 ➜	1/A/296:301	NA
6	HL_6W7M_008 ➜	1/A/320:333	NA
7	HL_6W7M_009 ➜	1/A/342:347	NA
8	HL_6W7M_010 ➜	1/A/379:384	NA
9	HL_6W7M_011 ➜	1/A/419:424	NA
10	HL_6W7M_013 ➜	1/A/522:527	NA
11	HL_6W7M_014 ➜	1/A/617:623	NA
12	HL_6W7M_016 ➜	1/A/726:731	NA
13	HL_6W7M_019 ➜	1/A/862:867	NA
14	HL_6W7M_020 ➜	1/A/897:902	NA
15	HL_6W7M_021 ➜	1/A/963:972	NA
16	HL_6W7M_022 ➜	1/A/1012:1017	NA
17	HL_6W7M_023 ➜	1/A/1028:1033	NA
18	HL_6W7M_024 ➜	1/A/1076:1081	NA
19	HL_6W7M_025 ➜	1/A/1088:1097	NA
20	HL_6W7M_026 ➜	1/A/1134:1140	NA
21	HL_6W7M_028 ➜	1/A/1265:1270	NA
22	HL_6W7M_029 ➜	1/A/1314:1323	NA
23	HL_6W7M_030 ➜	1/A/1356:1366	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_6W7M_002 ➜	missing nts	80, 81, 82, 83, 84, 85, 86, 87, 88, 89
2	HL_6W7M_005 ➜	missing nts	206, 207, 208, 209, 210, 211, 212, 213
3	HL_6W7M_012 ➜	missing nts	462, 463, 464, 465, 466, 467, 468, 469, 470
4	HL_6W7M_015 ➜	missing nts	689, 690, 691, 692, 693, 694, 695, 696, 697, 698
5	HL_6W7M_017 ➜	missing nts	786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 796
6	HL_6W7M_018 ➜	missing nts	840, 841, 842, 843, 844, 845, 846
7	HL_6W7M_027 ➜	missing nts	1165, 1166, 1167, 1168, 1169, 1170, 1171
8	HL_6W7M_031 ➜	missing nts	1449, 1450, 1451, 1452, 1453, 1454
9	HL_6W7M_032 ➜	missing nts	2MG, 2MG, 2MG, 2MG, 2MG, 2MG, 2MG, 2MG, 2MG, 2MG, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6, MA6

Valid loops

#	loop id	location	motif
1	J3_6W7M_001 ➜	1/A/46:47,1/A/361:367,1/A/393:395	NA
2	J3_6W7M_002 ➜	1/A/586:588,1/A/651:654,1/A/754:755	NA
3	J3_6W7M_003 ➜	1/A/672:673,1/A/717:725,1/A/732:734	NA
4	J3_6W7M_004 ➜	1/A/826:829,1/A/857:861,1/A/868:874	NA
5	J3_6W7M_005 ➜	1/A/936:939,1/A/1344:1350,1/A/1372:1379	NA
6	J3_6W7M_006 ➜	1/A/943:946,1/A/1235:1237,1/A/1337:1340	NA
7	J3_6W7M_007 ➜	1/A/955:962,1/A/973:984,1/A/1221:1225	NA
8	J3_6W7M_008 ➜	1/A/990:993,1/A/1045:1047,1/A/1210:1215	NA
9	J3_6W7M_009 ➜	1/A/1003:1007,1/A/1022:1027,1/A/1034:1037	NA
10	J3_6W7M_010 ➜	1/A/1063:1068,1/A/1107:1113,1/A/1187:1193	NA
11	J3_6W7M_011 ➜	1/A/1073:1075,1/A/1082:1087,1/A/1098:1102	NA
12	J3_6W7M_012 ➜	1/A/1116:1118,1/A/1155:1162,1/A/1174:1184	NA
13	J3_6W7M_013 ➜	1/A/1237:1241,1/A/1296:1303,1/A/1334:1337	NA

Problematic loops

No problematic loops