6W6K | Motifs

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_6W6K_001	1/A/12:22	NA	NA
2	HL_6W6K_003	1/A/158:163	NA	NA
3	HL_6W6K_004	1/A/186:191	NA	NA
4	HL_6W6K_006	1/A/259:267	NA	NA
5	HL_6W6K_007	1/A/296:301	NA	NA
6	HL_6W6K_008	1/A/320:333	NA	NA
7	HL_6W6K_009	1/A/342:347	NA	NA
8	HL_6W6K_010	1/A/379:384	NA	NA
9	HL_6W6K_011	1/A/419:424	NA	NA
10	HL_6W6K_013	1/A/522:527	NA	NA
11	HL_6W6K_014	1/A/617:623	NA	NA
12	HL_6W6K_016	1/A/726:731	NA	NA
13	HL_6W6K_019	1/A/862:867	NA	NA
14	HL_6W6K_020	1/A/897:902	NA	NA
15	HL_6W6K_021	1/A/963:972	NA	NA
16	HL_6W6K_022	1/A/1012:1017	NA	NA
17	HL_6W6K_023	1/A/1028:1033	NA	NA
18	HL_6W6K_024	1/A/1076:1081	NA	NA
19	HL_6W6K_025	1/A/1089:1096	NA	NA
20	HL_6W6K_026	1/A/1134:1140	NA	NA
21	HL_6W6K_028	1/A/1265:1270	NA	NA
22	HL_6W6K_029	1/A/1314:1323	NA	NA
23	HL_6W6K_030	1/A/1356:1366	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_6W6K_002	missing nts	NA
2	HL_6W6K_005	missing nts	NA
3	HL_6W6K_012	missing nts	NA
4	HL_6W6K_015	missing nts	NA
5	HL_6W6K_017	missing nts	NA
6	HL_6W6K_018	missing nts	NA
7	HL_6W6K_027	missing nts	NA
8	HL_6W6K_031	missing nts	NA
9	HL_6W6K_032	missing nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_6W6K_001	1/A/30:32, 1/A/552:553	NA	NA
2	IL_6W6K_002	1/A/43:45, 1/A/396:399	NA	NA
3	IL_6W6K_003	1/A/47:52, 1/A/359:361	NA	NA
4	IL_6W6K_004	1/A/54:56, 1/A/356:357	NA	NA
5	IL_6W6K_005	1/A/63:66, 1/A/103:104	NA	NA
6	IL_6W6K_006	1/A/67:69, 1/A/99:102	NA	NA
7	IL_6W6K_008	1/A/75:76, 1/A/93:95	NA	NA
8	IL_6W6K_009	1/A/128:132, 1/A/230:233	NA	NA
9	IL_6W6K_010	1/A/132:136, 1/A/227:230	NA	NA
10	IL_6W6K_011	1/A/144:146, 1/A/176:178	NA	NA
11	IL_6W6K_012	1/A/146:148, 1/A/175:176	NA	NA
12	IL_6W6K_013	1/A/148:153, 1/A/168:175	NA	NA
13	IL_6W6K_015	1/A/242:247, 1/A/277:284	NA	NA
14	IL_6W6K_016	1/A/249:252, 1/A/274:275	NA	NA
15	IL_6W6K_017	1/A/292:293, 1/A/304:308	NA	NA
16	IL_6W6K_018	1/A/339:341, 1/A/348:351	NA	NA
17	IL_6W6K_019	1/A/367:369, 1/A/392:393	NA	NA
18	IL_6W6K_020	1/A/371:375, 1/A/389:390	NA	NA
19	IL_6W6K_021	1/A/375:376, 1/A/387:389	NA	NA
20	IL_6W6K_022	1/A/408:416, 1/A/427:434	NA	NA
21	IL_6W6K_024	1/A/446:450, 1/A/483:488	NA	NA
22	IL_6W6K_025	1/A/450:455, 1/A/477:483	NA	NA
23	IL_6W6K_026	1/A/504:511, 1/A/540:541	NA	NA
24	IL_6W6K_027	1/A/515:521, 1/A/528:536	NA	NA
25	IL_6W6K_028	1/A/569:575, 1/A/880:881	NA	NA
26	IL_6W6K_029	1/A/578:584, 1/A/757:763	NA	NA
27	IL_6W6K_030	1/A/594:597, 1/A/643:645	NA	NA
28	IL_6W6K_031	1/A/597:598, 1/A/640:643	NA	NA
29	IL_6W6K_032	1/A/604:612, 1/A/628:634	NA	NA
30	IL_6W6K_033	1/A/654:655, 1/A/751:754	NA	NA
31	IL_6W6K_034	1/A/655:660, 1/A/745:751	NA	NA
32	IL_6W6K_035	1/A/662:667, 1/A/739:743	NA	NA
33	IL_6W6K_036	1/A/668:670, 1/A/737:738	NA	NA
34	IL_6W6K_039	1/A/887:894, 1/A/905:910	NA	NA
35	IL_6W6K_040	1/A/922:923, 1/A/1393:1395	NA	NA
36	IL_6W6K_041	1/A/925:927, 1/A/1390:1391	NA	NA
37	IL_6W6K_042	1/A/933:935, 1/A/1380:1384	NA	NA
38	IL_6W6K_043	1/A/953:954, 1/A/1226:1228	NA	NA
39	IL_6W6K_044	1/A/993:997, 1/A/1044:1045	NA	NA
40	IL_6W6K_045	1/A/998:999, 1/A/1041:1043	NA	NA
41	IL_6W6K_046	1/A/1048:1050, 1/A/1208:1209	NA	NA
42	IL_6W6K_047	1/A/1052:1056, 1/A/1204:1206	NA	NA
43	IL_6W6K_048	1/A/1057:1058, 1/A/1199:1203	NA	NA
44	IL_6W6K_049	1/A/1060:1061, 1/A/1195:1197	NA	NA
45	IL_6W6K_050	1/A/1061:1063, 1/A/1193:1195	NA	NA
46	IL_6W6K_051	1/A/1124:1129, 1/A/1143:1149	NA	NA
47	IL_6W6K_052	1/A/1129:1132, 1/A/1142:1143	NA	NA
48	IL_6W6K_053	1/A/1158:1161, 1/A/1175:1181	NA	NA
49	IL_6W6K_054	1/A/1247:1253, 1/A/1284:1290	NA	NA
50	IL_6W6K_055	1/A/1255:1258, 1/A/1277:1282	NA	NA
51	IL_6W6K_056	1/A/1259:1263, 1/A/1272:1276	NA	NA
52	IL_6W6K_057	1/A/1303:1308, 1/A/1329:1334	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_6W6K_007	missing nts	NA
2	IL_6W6K_014	missing nts	NA
3	IL_6W6K_023	missing nts	NA
4	IL_6W6K_037	missing nts	NA
5	IL_6W6K_038	missing nts	NA
6	IL_6W6K_058	missing nts	NA
7	IL_6W6K_059	missing nts	NA
8	IL_6W6K_060	missing nts	NA
9	IL_6W6K_061	missing nts	NA
10	IL_6W6K_062	missing nts	NA
11	IL_6W6K_063	missing nts	NA
12	IL_6W6K_064	missing nts	NA
13	IL_6W6K_065	missing nts	NA
14	IL_6W6K_066	missing nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	J3_6W6K_001	1/A/46:47, 1/A/361:367, 1/A/393:395	NA	NA
2	J3_6W6K_002	1/A/586:588, 1/A/651:654, 1/A/754:755	NA	NA
3	J3_6W6K_003	1/A/826:829, 1/A/857:861, 1/A/868:874	NA	NA
4	J3_6W6K_004	1/A/943:946, 1/A/1235:1237, 1/A/1337:1340	NA	NA
5	J3_6W6K_005	1/A/955:962, 1/A/973:984, 1/A/1221:1225	NA	NA
6	J3_6W6K_006	1/A/990:993, 1/A/1045:1047, 1/A/1210:1215	NA	NA
7	J3_6W6K_007	1/A/1003:1006, 1/A/1023:1027, 1/A/1034:1037	NA	NA
8	J3_6W6K_008	1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193	NA	NA
9	J3_6W6K_009	1/A/1073:1074, 1/A/1083:1087, 1/A/1098:1102	NA	NA
10	J3_6W6K_010	1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184	NA	NA
11	J3_6W6K_011	1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337	NA	NA

Problematic loops

No problematic loops

6W6K Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops