RNA 3D Hub //

4V7C Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V7C_0011/AA/12:22No text annotation
Not in a motif group		homologous
HL_5J7L_001
HL_89881.2
HL_4V7C_0021/AA/79:90No text annotation
Not in a motif group
HL_4V7C_0031/AA/158:163GNRA
Not in a motif group		homologous
HL_5J7L_003
HL_42097.1
HL_4V7C_0041/AA/186:191GNRA
Not in a motif group		homologous
HL_5J7L_004
HL_42097.1
HL_4V7C_0051/AA/206:213No text annotation
Not in a motif group		geometric
HL_5TBW_012
HL_86373.2
HL_4V7C_0061/AA/259:267No text annotation
Not in a motif group		homologous
HL_5J7L_006
HL_69023.2
HL_4V7C_0071/AA/296:301GNRA
Not in a motif group		homologous
HL_5J7L_007
HL_42097.1
HL_4V7C_0081/AA/320:333No text annotation
Not in a motif group		homologous
HL_5J7L_008
HL_81205.2
HL_4V7C_0091/AA/342:347UNCG
Not in a motif group		homologous
HL_4LFB_009
HL_03562.2
HL_4V7C_0101/AA/379:384GNRA
Not in a motif group		homologous
HL_5J7L_010
HL_42097.1
HL_4V7C_0111/AA/419:424UNCG
Not in a motif group		homologous
HL_5J7L_011
HL_03562.2
HL_4V7C_0121/AA/459:473No text annotation
Not in a motif group
HL_4V7C_0131/AA/521:528No text annotation
Not in a motif group
HL_4V7C_0141/AA/617:623No text annotation
Not in a motif group		homologous
HL_5J7L_014
HL_26881.1
HL_4V7C_0151/AA/689:698No text annotation
Not in a motif group		homologous
HL_6CZR_086
HL_12326.1
HL_4V7C_0161/AA/726:731Other HL
Not in a motif group		homologous
HL_5J7L_016
HL_87030.2
HL_4V7C_0171/AA/786:796No text annotation
Not in a motif group		homologous
HL_4LFB_017
HL_12326.1
HL_4V7C_0181/AA/840:846No text annotation
Not in a motif group
HL_4V7C_0191/AA/862:867GNRA
Not in a motif group		homologous
HL_5J7L_019
HL_42097.1
HL_4V7C_0201/AA/897:902GNRA
Not in a motif group		homologous
HL_4LFB_020
HL_42097.1
HL_4V7C_0211/AA/963:972No text annotation
Not in a motif group
HL_4V7C_0221/AA/1012:1017GNRA
Not in a motif group		homologous
HL_4LFB_022
HL_42097.1
HL_4V7C_0231/AA/1028:1033No text annotation
Not in a motif group		geometric
HL_5U3G_001
HL_87030.2
HL_4V7C_0241/AA/1076:1081GNRA
Not in a motif group		homologous
HL_5J7L_023
HL_42097.1
HL_4V7C_0251/AA/1089:1096No text annotation
Not in a motif group		homologous
HL_4LFB_025
HL_71554.2
HL_4V7C_0261/AA/1134:1140No text annotation
Not in a motif group		homologous
HL_6CZR_097
NA
HL_4V7C_0271/AA/1165:1171No text annotation
Not in a motif group		homologous
HL_5J7L_026
HL_90617.2
HL_4V7C_0281/AA/1265:1270GNRA
Not in a motif group		homologous
HL_5J7L_027
HL_42097.1
HL_4V7C_0291/AA/1314:1323No text annotation
Not in a motif group		homologous
HL_4LFB_029
HL_89380.2
HL_4V7C_0301/AA/1355:1367No text annotation
Not in a motif group
HL_4V7C_0311/AA/1449:1454UNCG
Not in a motif group		homologous
HL_5J7L_030
HL_03562.2
HL_4V7C_0321/AA/1515:1520No text annotation
Not in a motif group		homologous
HL_4LFB_032
NA
HL_4V7C_0341/AV/31:39tRNA anticodon loop
Not in a motif group		homologous
HL_5IBB_210
HL_53597.2
HL_4V7C_0371/AW/30:40No text annotation
Not in a motif group		homologous
HL_5IB8_208
NA
HL_4V7C_0381/AW/53:61T-loop with 2 stacked bulged bases
Not in a motif group		homologous
HL_4LCK_003
HL_22280.1
HL_4V7C_0391/BA/59:68No text annotation
Not in a motif group		homologous
HL_5J7L_134
HL_18177.1
HL_4V7C_0401/BA/87:95No text annotation
Not in a motif group		homologous
HL_5J7L_135
HL_84193.1
HL_4V7C_0411/BA/123:128No text annotation
Not in a motif group		homologous
HL_5J7L_136
HL_75407.1
HL_4V7C_0421/BA/137:142No text annotation
Not in a motif group		homologous
HL_5J7L_137
HL_30239.1
HL_4V7C_0431/BA/158:168No text annotation
Not in a motif group		homologous
HL_5J7L_138
HL_81820.1
HL_4V7C_0441/BA/194:201No text annotation
Not in a motif group		geometric
HL_7RQB_006
HL_06192.2
HL_4V7C_0451/BA/225:230No text annotation
Not in a motif group		homologous
HL_5J7L_140
HL_27930.1
HL_4V7C_0461/BA/246:252No text annotation
Not in a motif group		homologous
HL_4WF9_008
HL_67216.7
HL_4V7C_0471/BA/305:312T-loop with 1 bulged base
Not in a motif group		homologous
HL_5J7L_142
HL_89380.2
HL_4V7C_0481/BA/319:323No text annotation
Not in a motif group		homologous
HL_7RQB_011
HL_75407.1
HL_4V7C_0491/BA/327:335No text annotation
Not in a motif group		homologous
HL_5J7L_144
HL_08002.8
HL_4V7C_0501/BA/381:393No text annotation
Not in a motif group
HL_4V7C_0511/BA/410:417No text annotation
Not in a motif group		homologous
HL_5J7L_146
HL_96598.1
HL_4V7C_0521/BA/462:467GNRA
Not in a motif group		homologous
HL_4WF9_015
HL_42097.1
HL_4V7C_0531/BA/487:493No text annotation
Not in a motif group		homologous
HL_5J7L_148
HL_42097.1
HL_4V7C_0541/BA/543:550No text annotation
Not in a motif group		homologous
HL_5J7L_149
HL_79531.1
HL_4V7C_0551/BA/566:575T-loop with 2 stacked bulged bases
Not in a motif group		geometric
HL_5J7L_150
HL_89380.2
HL_4V7C_0561/BA/611:617No text annotation
Not in a motif group		homologous
HL_5J7L_151
HL_90617.2
HL_4V7C_0571/BA/629:634GNRA
Not in a motif group		homologous
HL_5J7L_152
HL_42097.1
HL_4V7C_0581/BA/641:647No text annotation
Not in a motif group		homologous
HL_5J7L_153
HL_77805.2
HL_4V7C_0591/BA/712:719No text annotation
Not in a motif group		homologous
HL_5J7L_154
HL_84085.2
HL_4V7C_0601/BA/744:753No text annotation
Not in a motif group		homologous
HL_4WF9_023
HL_39334.6
HL_4V7C_0611/BA/779:785No text annotation
Not in a motif group		geometric
HL_5U3G_001
HL_87030.2
HL_4V7C_0621/BA/826:831No text annotation
Not in a motif group		homologous
HL_4WF9_025
HL_64365.1
HL_4V7C_0641/BA/955:962GNRA
Not in a motif group		homologous
HL_4WF9_027
HL_42097.1
HL_4V7C_0651/BA/978:985No text annotation
Not in a motif group		homologous
HL_7A0S_027
HL_64430.2
HL_4V7C_0661/BA/1064:1074No text annotation
Not in a motif group		homologous
HL_5J7L_161
HL_07145.1
HL_4V7C_0671/BA/1092:1099No text annotation
Not in a motif group		homologous
HL_6PRV_002
HL_84085.2
HL_4V7C_0681/BA/1167:1182No text annotation
Not in a motif group
HL_4V7C_0691/BA/1222:1227Other HL
Not in a motif group		homologous
HL_5J7L_164
HL_87030.2
HL_4V7C_0701/BA/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group		homologous
HL_5J7L_165
HL_89380.2
HL_4V7C_0711/BA/1324:1330No text annotation
Not in a motif group		homologous
HL_5J7L_166
HL_46680.1
HL_4V7C_0721/BA/1363:1368Other HL
Not in a motif group		homologous
HL_5J7L_167
HL_87030.2
HL_4V7C_0731/BA/1389:1398No text annotation
Not in a motif group		homologous
HL_5J7L_168
HL_69023.2
HL_4V7C_0741/BA/1451:1459No text annotation
Not in a motif group		homologous
HL_5J7L_169
HL_53837.1
HL_4V7C_0751/BA/1492:1498No text annotation
Not in a motif group		homologous
HL_5J7L_170
HL_46680.1
HL_4V7C_0761/BA/1533:1538UNCG
Not in a motif group		homologous
HL_5J7L_171
HL_03562.2
HL_4V7C_0771/BA/1565:1568No text annotation
Not in a motif group		homologous
HL_5J7L_172
HL_38927.2
HL_4V7C_0781/BA/1612:1619No text annotation
Not in a motif group		homologous
HL_4WF9_038
HL_64430.2
HL_4V7C_0791/BA/1630:1636GNRA with one bulged base
Not in a motif group		homologous
HL_5J7L_174
HL_42097.1
HL_4V7C_0801/BA/1691:1696No text annotation
Not in a motif group		homologous
HL_7RQB_042
HL_03562.2
HL_4V7C_0811/BA/1727:1733No text annotation
Not in a motif group		geometric
HL_361D_002
HL_90617.2
HL_4V7C_0821/BA/1752:1756No text annotation
Not in a motif group		homologous
HL_7RQB_044
HL_76539.2
HL_4V7C_0831/BA/1777:1787No text annotation
Not in a motif group		homologous
HL_4WF9_043
HL_43613.5
HL_4V7C_0841/BA/1806:1811No text annotation
Not in a motif group		homologous
HL_5J7L_179
HL_42097.1
HL_4V7C_0851/BA/1868:1873Other HL
Not in a motif group		homologous
HL_5J7L_180
HL_42097.1
HL_4V7C_0861/BA/1910:1920No text annotation
Not in a motif group		geometric
HL_5TBW_049
HL_71924.2
HL_4V7C_0871/BA/1948:1958No text annotation
Not in a motif group
HL_4V7C_0881/BA/2027:2036No text annotation
Not in a motif group		homologous
HL_4WF9_047
HL_90642.6
HL_4V7C_0891/BA/2143:2148No text annotation
Not in a motif group		homologous
HL_5J7L_184
NA
HL_4V7C_0901/BA/2209:2215No text annotation
Not in a motif group		homologous
HL_5J7L_185
HL_16845.6
HL_4V7C_0911/BA/2248:2256No text annotation
Not in a motif group		homologous
HL_5J7L_186
NA
HL_4V7C_0921/BA/2264:2276No text annotation
Not in a motif group		homologous
HL_4WF9_050
HL_19870.6
HL_4V7C_0931/BA/2303:2313No text annotation
Not in a motif group		homologous
HL_7RQB_055
HL_11805.3
HL_4V7C_0941/BA/2323:2332No text annotation
Not in a motif group		geometric
HL_5TBW_012
HL_86373.2
HL_4V7C_0951/BA/2356:2361Other HL
Not in a motif group		homologous
HL_5J7L_190
HL_87030.2
HL_4V7C_0961/BA/2374:2379GNRA
Not in a motif group		homologous
HL_4WF9_054
HL_42097.1
HL_4V7C_0971/BA/2404:2413No text annotation
Not in a motif group
HL_4V7C_0981/BA/2471:2479No text annotation
Not in a motif group		homologous
HL_4WF9_056
HL_06192.2
HL_4V7C_0991/BA/2528:2535No text annotation
Not in a motif group		homologous
HL_5J7L_194
HL_88526.2
HL_4V7C_1001/BA/2551:2557No text annotation
Not in a motif group		homologous
HL_4WF9_058
HL_43656.2
HL_4V7C_1011/BA/2594:2599No text annotation
Not in a motif group		homologous
HL_7RQB_063
HL_42097.1
HL_4V7C_1021/BA/2658:2663GNRA
Not in a motif group		geometric
HL_5X2G_001
HL_42097.1
HL_4V7C_1031/BA/2701:2706Ribsomal LSU H95
Not in a motif group		homologous
HL_5J7L_198
HL_46680.1
HL_4V7C_1041/BA/2745:2759No text annotation
Not in a motif group		homologous
HL_4WF9_062
HL_56677.7
HL_4V7C_1051/BA/2795:2801Other HL
Not in a motif group		homologous
HL_5J7L_200
HL_34168.2
HL_4V7C_1061/BA/2819:2827No text annotation
Not in a motif group		geometric
HL_5J7L_201
HL_27930.1
HL_4V7C_1071/BA/2856:2861Other HL
Not in a motif group		homologous
HL_5J7L_202
HL_42097.1
HL_4V7C_1081/BB/38:44No text annotation
Not in a motif group		geometric
HL_7RQB_011
HL_75407.1
HL_4V7C_1091/BB/86:90No text annotation
Not in a motif group		homologous
HL_5J7L_204
HL_38927.2

Problematic loops

#loop idProblemSequence
HL_4V7C_033No text annotation
HL_4V7C_035T-loop with 2 stacked bulged bases
HL_4V7C_036No text annotation
HL_4V7C_063No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V7C_0011/AA/30:32,
1/AA/552:553		Single bulged G
Not in a motif group		homologous
IL_5J7L_001
IL_00225.2
IL_4V7C_0021/AA/43:45,
1/AA/396:399		No text annotation
Not in a motif group		geometric
IL_7A0S_107
IL_51629.2
IL_4V7C_0031/AA/47:52,
1/AA/359:361		No text annotation
Not in a motif group		homologous
IL_5J7L_003
IL_11178.1
IL_4V7C_0041/AA/54:56,
1/AA/356:357		Minor groove platform
Not in a motif group		homologous
IL_4LFB_004
IL_93353.1
IL_4V7C_0051/AA/63:66,
1/AA/103:104		Multiple bulged bases
Not in a motif group		homologous
IL_4LFB_005
IL_76389.1
IL_4V7C_0061/AA/67:69,
1/AA/99:102		Minor groove platform with extra cWW
Not in a motif group		geometric
IL_5J7L_006
IL_65006.1
IL_4V7C_0071/AA/69:73,
1/AA/97:99		No text annotation
Not in a motif group
IL_4V7C_0081/AA/75:76,
1/AA/93:95		Major groove intercalation
Not in a motif group		geometric
IL_5J7L_352
IL_16396.2
IL_4V7C_0101/AA/127:132,
1/AA/230:234		No text annotation
Not in a motif group
IL_4V7C_0111/AA/132:137,
1/AA/226:230		No text annotation
Not in a motif group
IL_4V7C_0121/AA/144:146,
1/AA/176:178		Isolated cWH basepair
Not in a motif group		homologous
IL_5J7L_011
IL_51629.2
IL_4V7C_0131/AA/147:154,
1/AA/167:175		No text annotation
Not in a motif group
IL_4V7C_0141/AA/203:206,
1/AA/213:214		No text annotation
Not in a motif group
IL_4V7C_0151/AA/242:247,
1/AA/277:284		Kink-turn with non-sequential stacking
Not in a motif group		homologous
IL_5J7L_014
IL_45067.2
IL_4V7C_0161/AA/248:253,
1/AA/273:276		No text annotation
Not in a motif group
IL_4V7C_0171/AA/291:293,
1/AA/304:309		No text annotation
Not in a motif group
IL_4V7C_0181/AA/371:375,
1/AA/389:390		C-loop
Not in a motif group		homologous
IL_5J7L_018
IL_75255.1
IL_4V7C_0191/AA/375:377,
1/AA/386:389		Single bulged G, near cWW
Not in a motif group		geometric
IL_6CZR_128
IL_52767.2
IL_4V7C_0201/AA/407:409,
1/AA/433:435		No text annotation
Not in a motif group		geometric
IL_4KR9_002
IL_51629.2
IL_4V7C_0211/AA/409:416,
1/AA/427:433		No text annotation
Not in a motif group		homologous
IL_4LFB_017
IL_28026.1
IL_4V7C_0221/AA/446:450,
1/AA/483:488		tSH-tHW-tWW
Not in a motif group		geometric
IL_5J7L_022
IL_88269.3
IL_4V7C_0231/AA/450:454,
1/AA/479:483		No text annotation
Not in a motif group
IL_4V7C_0241/AA/454:458,
1/AA/474:479		No text annotation
Not in a motif group
IL_4V7C_0251/AA/504:511,
1/AA/540:541		SSU/LSU pseudoknot
Not in a motif group		homologous
IL_5J7L_024
IL_15861.7
IL_4V7C_0261/AA/515:521,
1/AA/528:536		No text annotation
Not in a motif group		homologous
IL_5J7L_025
NA
IL_4V7C_0271/AA/569:575,
1/AA/880:881		No text annotation
Not in a motif group
IL_4V7C_0281/AA/580:584,
1/AA/757:761		tSH-tHW-tHS
Not in a motif group		homologous
IL_5J7L_027
IL_17136.1
IL_4V7C_0291/AA/594:596,
1/AA/644:645		Major groove platform
Not in a motif group		homologous
IL_5J7L_028
IL_27635.1
IL_4V7C_0301/AA/596:599,
1/AA/639:644		No text annotation
Not in a motif group
IL_4V7C_0311/AA/605:612,
1/AA/628:633		No text annotation
Not in a motif group		homologous
IL_5J7L_030
IL_78349.1
IL_4V7C_0321/AA/654:655,
1/AA/751:754		Major groove platform; stack outside cWW
Not in a motif group		homologous
IL_5J7L_031
IL_50694.2
IL_4V7C_0331/AA/659:660,
1/AA/745:747		Single stack bend
Not in a motif group		homologous
IL_5J7L_032
IL_76488.2
IL_4V7C_0341/AA/662:666,
1/AA/740:743		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_6CZR_141
IL_71110.1
IL_4V7C_0351/AA/683:688,
1/AA/699:707		Kink-turn
Not in a motif group		homologous
IL_4LFB_031
IL_37722.1
IL_4V7C_0361/AA/774:778,
1/AA/804:805		Left turn
Not in a motif group		homologous
IL_4LFB_032
IL_29346.1
IL_4V7C_0371/AA/779:783,
1/AA/799:803		tSH-tHW-tHS
Not in a motif group		homologous
IL_4LFB_033
IL_17136.1
IL_4V7C_0381/AA/887:894,
1/AA/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group		homologous
IL_5J7L_038
IL_24606.2
IL_4V7C_0391/AA/925:927,
1/AA/1390:1391		Single bulged G
Not in a motif group		homologous
IL_5J7L_040
IL_00225.2
IL_4V7C_0411/AA/933:935,
1/AA/1380:1384		Minor groove platform
Not in a motif group		homologous
IL_5J7L_041
IL_47078.1
IL_4V7C_0421/AA/953:954,
1/AA/1226:1228		Minor groove platform
Not in a motif group		homologous
IL_5J7L_042
IL_42622.2
IL_4V7C_0441/AA/993:998,
1/AA/1043:1045		No text annotation
Not in a motif group
IL_4V7C_0451/AA/998:999,
1/AA/1041:1043		Single stack bend
Not in a motif group		homologous
IL_5J7L_044
IL_76488.2
IL_4V7C_0461/AA/1006:1008,
1/AA/1021:1023		No text annotation
Not in a motif group		geometric
IL_5C5W_002
IL_95997.1
IL_4V7C_0471/AA/1048:1050,
1/AA/1208:1209		Single bulged U
Not in a motif group		homologous
IL_5J7L_046
IL_83039.13
IL_4V7C_0481/AA/1051:1056,
1/AA/1204:1207		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_4V88_473
IL_30621.2
IL_4V7C_0491/AA/1057:1058,
1/AA/1199:1203		Minor groove platform
Not in a motif group		homologous
IL_5J7L_048
IL_93353.1
IL_4V7C_0501/AA/1060:1061,
1/AA/1195:1197		Single bulged A
Not in a motif group		homologous
IL_5J7L_049
IL_37497.2
IL_4V7C_0511/AA/1061:1063,
1/AA/1193:1195		No text annotation
Not in a motif group		geometric
IL_5J7L_050
IL_95997.1
IL_4V7C_0541/AA/1124:1129,
1/AA/1143:1149		No text annotation
Not in a motif group
IL_4V7C_0551/AA/1129:1132,
1/AA/1142:1143		Minor groove platform
Not in a motif group		geometric
IL_5J7L_052
IL_15052.1
IL_4V7C_0561/AA/1158:1162,
1/AA/1174:1181		No text annotation
Not in a motif group
IL_4V7C_0571/AA/1246:1253,
1/AA/1284:1291		No text annotation
Not in a motif group
IL_4V7C_0581/AA/1255:1258,
1/AA/1277:1282		No text annotation
Not in a motif group		homologous
IL_5J7L_055
IL_75461.4
IL_4V7C_0591/AA/1259:1263,
1/AA/1272:1276		Triple sheared
Not in a motif group		homologous
IL_5J7L_056
IL_56467.8
IL_4V7C_0601/AA/1303:1309,
1/AA/1328:1334		No text annotation
Not in a motif group
IL_4V7C_0621/AA/1399:1401,
1/AA/1501:1504		No text annotation
Not in a motif group		geometric
IL_4V88_463
IL_36143.3
IL_4V7C_0631/AA/1401:1404,
1/AA/1497:1501		No text annotation
Not in a motif group		geometric
IL_4V88_464
IL_99670.1
IL_4V7C_0641/AA/1405:1407,
1/AA/1494:1496		No text annotation
Not in a motif group		geometric
IL_4V88_465
IL_95997.1
IL_4V7C_0651/AA/1407:1409,
1/AA/1491:1494		Decoding loop related
Not in a motif group		geometric
IL_3C3Z_002
IL_64417.1
IL_4V7C_0661/AA/1412:1415,
1/AA/1485:1488		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_6CZR_168
IL_67743.1
IL_4V7C_0671/AA/1416:1420,
1/AA/1480:1484		No text annotation
Not in a motif group
IL_4V7C_0681/AA/1429:1435,
1/AA/1466:1471		No text annotation
Not in a motif group
IL_4V7C_0691/AA/1440:1442,
1/AA/1460:1461		Minor groove platform
Not in a motif group		homologous
IL_5J7L_064
IL_42622.2
IL_4V7C_0701/AA/1445:1448,
1/AA/1455:1457		No text annotation
Not in a motif group		homologous
IL_5J7L_065
IL_02284.5
IL_4V7C_0741/AW/50:52,
1/AW/62:64		No text annotation
Not in a motif group		homologous
IL_4V9K_064
IL_95997.1
IL_4V7C_0751/BA/36:37,
1/BA/442:444		Single bulged A
Not in a motif group		geometric
IL_7RQB_002
IL_37497.2
IL_4V7C_0771/BA/42:44,
1/BA/434:437		Minor groove platform with extra cWW
Not in a motif group		homologous
IL_4WF9_003
IL_65006.1
IL_4V7C_0781/BA/81:85,
1/BA/97:105		No text annotation
Not in a motif group		homologous
IL_5J7L_248
IL_93699.1
IL_4V7C_0791/BA/183:184,
1/BA/212:214		Single stack bend
Not in a motif group		homologous
IL_5J7L_249
IL_76488.2
IL_4V7C_0801/BA/188:194,
1/BA/201:208		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5J7L_250
IL_04346.7
IL_4V7C_0811/BA/239:245,
1/BA/253:258		7x6 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5J7L_251
IL_76042.2
IL_4V7C_0831/BA/274:281,
1/BA/359:363		No text annotation
Not in a motif group		homologous
IL_5J7L_253
IL_77870.1
IL_4V7C_0851/BA/293:295,
1/BA/343:347		No text annotation
Not in a motif group		homologous
IL_5J7L_254
IL_69440.1
IL_4V7C_0861/BA/481:484,
1/BA/496:509		No text annotation
Not in a motif group		homologous
IL_5J7L_255
IL_60992.6
IL_4V7C_0871/BA/536:539,
1/BA/554:557		Double sheared
Not in a motif group		homologous
IL_5J7L_256
IL_09705.9
IL_4V7C_0881/BA/564:566,
1/BA/575:577		No text annotation
Not in a motif group		homologous
IL_5J7L_257
IL_95997.1
IL_4V7C_0891/BA/591:593,
1/BA/664:666		No text annotation
Not in a motif group		geometric
IL_4KR9_002
IL_51629.2
IL_4V7C_0901/BA/606:610,
1/BA/618:622		AAA cross-strand stack
Not in a motif group		homologous
IL_5J7L_258
IL_17136.1
IL_4V7C_0911/BA/672:674,
1/BA/806:808		No text annotation
Not in a motif group		homologous
IL_5J7L_259
IL_95997.1
IL_4V7C_0921/BA/674:678,
1/BA/799:806		tHW-tHW cross-strand stack
Not in a motif group		geometric
IL_5J7L_260
IL_17470.6
IL_4V7C_0931/BA/697:698,
1/BA/763:765		Single bulged A
Not in a motif group		geometric
IL_5J7L_261
IL_37497.2
IL_4V7C_0941/BA/702:703,
1/BA/728:730		Single bulged G
Not in a motif group		homologous
IL_4WF9_023
IL_00225.2
IL_4V7C_0951/BA/703:707,
1/BA/724:728		Triple sheared
Not in a motif group		geometric
IL_4V9F_027
IL_56467.8
IL_4V7C_0961/BA/738:740,
1/BA/757:758		Major groove platform
Not in a motif group		homologous
IL_4WF9_026
IL_27635.1
IL_4V7C_0971/BA/775:777,
1/BA/787:791		Multiple bulged bases
Not in a motif group		homologous
IL_5J7L_265
IL_90991.6
IL_4V7C_0981/BA/844:847,
1/BA/933:934		Other IL
Not in a motif group		homologous
IL_5J7L_267
IL_92001.1
IL_4V7C_0991/BA/847:848,
1/BA/930:933		Stack outside cWW
Not in a motif group		geometric
IL_5J7L_268
IL_37629.1
IL_4V7C_1001/BA/850:851,
1/BA/926:928		Single stack bend
Not in a motif group		homologous
IL_5J7L_269
IL_76488.2
IL_4V7C_1011/BA/856:862,
1/BA/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group		geometric
IL_5J7L_270
IL_93830.3
IL_4V7C_1021/BA/862:863,
1/BA/913:915		Single bulged G
Not in a motif group		homologous
IL_5J7L_271
IL_00225.2
IL_4V7C_1031/BA/863:868,
1/BA/909:913		No text annotation
Not in a motif group
IL_4V7C_1041/BA/870:872,
1/BA/905:907		No text annotation
Not in a motif group		homologous
IL_5J7L_273
IL_95997.1
IL_4V7C_1051/BA/875:880,
1/BA/897:902		No text annotation
Not in a motif group
IL_4V7C_1061/BA/880:882,
1/BA/894:897		Isolated non-canonical cWW with bulges
Not in a motif group		geometric
IL_3TD0_005
IL_82068.2
IL_4V7C_1071/BA/994:996,
1/BA/1159:1160		Single bulged C
Not in a motif group		homologous
IL_7RQB_035
IL_61258.12
IL_4V7C_1081/BA/998:1002,
1/BA/1153:1157		UAA/GAN
Not in a motif group		homologous
IL_5J7L_277
IL_89002.2
IL_4V7C_1091/BA/1004:1011,
1/BA/1150:1151		SSU/LSU pseudoknot
Not in a motif group		geometric
IL_5J7L_278
IL_15861.7
IL_4V7C_1101/BA/1011:1013,
1/BA/1149:1150		Single bulged U
Not in a motif group		homologous
IL_5J7L_279
IL_83039.13
IL_4V7C_1111/BA/1017:1024,
1/BA/1140:1145		No text annotation
Not in a motif group
IL_4V7C_1121/BA/1024:1030,
1/BA/1124:1140		No text annotation
Not in a motif group		geometric
IL_5J7L_281
IL_50715.1
IL_4V7C_1131/BA/1031:1034,
1/BA/1121:1123		Isolated non-canonical cWW with bulges
Not in a motif group		homologous
IL_5J7L_282
IL_82068.2
IL_4V7C_1141/BA/1038:1041,
1/BA/1114:1117		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5J7L_283
IL_30621.2
IL_4V7C_1151/BA/1059:1062,
1/BA/1076:1079		No text annotation
Not in a motif group		homologous
IL_5J7L_285
IL_23544.2
IL_4V7C_1161/BA/1087:1091,
1/BA/1100:1102		No text annotation
Not in a motif group		homologous
IL_7RQB_044
NA
IL_4V7C_1171/BA/1196:1199,
1/BA/1246:1250		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_3WBM_002
IL_30621.2
IL_4V7C_1181/BA/1202:1206,
1/BA/1240:1243		No text annotation
Not in a motif group		homologous
IL_5J7L_287
IL_91920.1
IL_4V7C_1191/BA/1208:1215,
1/BA/1234:1238		Kink-turn
Not in a motif group		homologous
IL_5J7L_288
IL_70923.2
IL_4V7C_1201/BA/1262:1269,
1/BA/2011:2017		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5J7L_289
IL_04346.7
IL_4V7C_1211/BA/1310:1313,
1/BA/1603:1604		Major groove platform; stack outside cWW
Not in a motif group		homologous
IL_7RQB_050
IL_50694.2
IL_4V7C_1221/BA/1319:1324,
1/BA/1330:1333		No text annotation
Not in a motif group
IL_4V7C_1231/BA/1351:1355,
1/BA/1376:1380		UAA/GAN
Not in a motif group		geometric
IL_7A0S_048
IL_89002.2
IL_4V7C_1241/BA/1355:1357,
1/BA/1374:1376		Isolated cWH basepair
Not in a motif group		geometric
IL_3D0M_001
IL_51629.2
IL_4V7C_1251/BA/1357:1361,
1/BA/1370:1374		tSH-tHW-tHS
Not in a motif group		geometric
IL_5J7L_293
IL_17136.1
IL_4V7C_1281/BA/1414:1417,
1/BA/1581:1588		No text annotation
Not in a motif group
IL_4V7C_1291/BA/1417:1421,
1/BA/1577:1581		UAA/GAN
Not in a motif group		geometric
IL_7A0S_033
IL_89002.2
IL_4V7C_1301/BA/1431:1435,
1/BA/1557:1562		No text annotation
Not in a motif group
IL_4V7C_1311/BA/1437:1440,
1/BA/1551:1555		tSH-tHW
Not in a motif group		homologous
IL_5J7L_297
IL_04059.1
IL_4V7C_1341/BA/1450:1451,
1/BA/1459:1461		Single bulged U
Not in a motif group		geometric
IL_5J7L_298
IL_83039.13
IL_4V7C_1351/BA/1468:1471,
1/BA/1520:1524		No text annotation
Not in a motif group		homologous
IL_5J7L_299
IL_68574.2
IL_4V7C_1361/BA/1473:1479,
1/BA/1512:1518		No text annotation
Not in a motif group
IL_4V7C_1371/BA/1480:1482,
1/BA/1507:1511		No text annotation
Not in a motif group
IL_4V7C_1381/BA/1489:1491,
1/BA/1499:1500		Single bulged A
Not in a motif group		homologous
IL_5J7L_302
IL_37497.2
IL_4V7C_1391/BA/1651:1656,
1/BA/2004:2006		No text annotation
Not in a motif group		homologous
IL_7RQB_064
IL_12566.2
IL_4V7C_1401/BA/1663:1665,
1/BA/1995:1997		Isolated tWW turn
Not in a motif group		homologous
IL_7A0S_060
IL_54997.7
IL_4V7C_1411/BA/1666:1669,
1/BA/1993:1994		Major groove platform; stack outside cWW
Not in a motif group		homologous
IL_4WF9_064
IL_50694.2
IL_4V7C_1421/BA/1686:1691,
1/BA/1696:1702		tSH-tSH-tHH-tHS
Not in a motif group		geometric
IL_7RQB_068
IL_65969.2
IL_4V7C_1431/BA/1712:1718,
1/BA/1742:1746		6x5 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5J7L_309
IL_88269.3
IL_4V7C_1441/BA/1720:1724,
1/BA/1736:1740		Triple sheared
Not in a motif group		homologous
IL_5J7L_310
IL_56467.8
IL_4V7C_1451/BA/1770:1771,
1/BA/1980:1982		Single bulged A
Not in a motif group		homologous
IL_7RQB_069
IL_37497.2
IL_4V7C_1461/BA/1798:1804,
1/BA/1813:1821		Kink-turn related
Not in a motif group		homologous
IL_5J7L_313
IL_17069.3
IL_4V7C_1471/BA/1837:1840,
1/BA/1902:1903		Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group		geometric
IL_4V9F_066
IL_88739.1
IL_4V7C_1481/BA/1840:1842,
1/BA/1898:1902		No text annotation
Not in a motif group
IL_4V7C_1491/BA/1845:1849,
1/BA/1893:1895		No text annotation
Not in a motif group
IL_4V7C_1501/BA/1861:1863,
1/BA/1879:1881		CA cWW
Not in a motif group		geometric
IL_5ED2_004
IL_95997.1
IL_4V7C_1511/BA/1864:1867,
1/BA/1874:1878		UAA/GAN related
Not in a motif group		homologous
IL_5J7L_317
IL_77691.1
IL_4V7C_1521/BA/1933:1934,
1/BA/1964:1967		Multiple bulged bases
Not in a motif group		geometric
IL_7RQB_076
IL_59677.2
IL_4V7C_1531/BA/1934:1945,
1/BA/1961:1964		No text annotation
Not in a motif group		homologous
IL_7A0S_072
IL_81589.2
IL_4V7C_1541/BA/2045:2047,
1/BA/2621:2623		CA cWW
Not in a motif group		geometric
IL_5ED2_004
IL_95997.1
IL_4V7C_1551/BA/2050:2052,
1/BA/2617:2618		Major groove platform
Not in a motif group		homologous
IL_5J7L_320
IL_27635.1
IL_4V7C_1561/BA/2054:2056,
1/BA/2612:2615		No text annotation
Not in a motif group
IL_4V7C_1581/BA/2067:2069,
1/BA/2442:2443		Single bulged U
Not in a motif group		geometric
IL_4V9F_074
IL_83039.13
IL_4V7C_1591/BA/2069:2071,
1/BA/2438:2442		No text annotation
Not in a motif group
IL_4V7C_1611/BA/2081:2083,
1/BA/2236:2239		Isolated tHS basepair with bulges
Not in a motif group		homologous
IL_5J7L_325
IL_38958.7
IL_4V7C_1621/BA/2085:2087,
1/BA/2232:2234		No text annotation
Not in a motif group		homologous
IL_7A0S_078
IL_95997.1
IL_4V7C_1641/BA/2100:2103,
1/BA/2186:2189		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_4K27_001
IL_30621.2
IL_4V7C_1651/BA/2103:2107,
1/BA/2182:2186		No text annotation
Not in a motif group		geometric
IL_5TBW_121
IL_05145.2
IL_4V7C_1701/BA/2138:2140,
1/BA/2151:2153		No text annotation
Not in a motif group		geometric
IL_5TBW_016
IL_51629.2
IL_4V7C_1721/BA/2202:2204,
1/BA/2220:2221		Single bulged U
Not in a motif group		homologous
IL_5J7L_331
IL_83039.13
IL_4V7C_1741/BA/2350:2353,
1/BA/2364:2367		Double sheared
Not in a motif group		homologous
IL_5J7L_333
IL_09705.9
IL_4V7C_1751/BA/2401:2403,
1/BA/2414:2415		No text annotation
Not in a motif group
IL_4V7C_1761/BA/2453:2454,
1/BA/2498:2500		Single stack bend
Not in a motif group		geometric
IL_4WF9_089
IL_76488.2
IL_4V7C_1771/BA/2454:2455,
1/BA/2496:2498		Major groove platform
Not in a motif group		homologous
IL_4WF9_090
IL_27635.1
IL_4V7C_1781/BA/2456:2461,
1/BA/2489:2495		No text annotation
Not in a motif group
IL_4V7C_1791/BA/2466:2470,
1/BA/2480:2484		Triple sheared
Not in a motif group		homologous
IL_5J7L_338
IL_56467.8
IL_4V7C_1801/BA/2507:2508,
1/BA/2580:2582		Major groove platform
Not in a motif group		homologous
IL_4WF9_094
IL_76223.2
IL_4V7C_1811/BA/2510:2512,
1/BA/2574:2578		Isolated non-canonical cWW with bulges
Not in a motif group		geometric
IL_7RQB_097
IL_90933.2
IL_4V7C_1821/BA/2512:2513,
1/BA/2571:2574		Multiple bulged bases
Not in a motif group		homologous
IL_7RQB_098
IL_71530.2
IL_4V7C_1831/BA/2522:2523,
1/BA/2540:2543		Minor groove platform with intercalation
Not in a motif group		homologous
IL_5J7L_342
IL_95601.3
IL_4V7C_1851/BA/2591:2592,
1/BA/2601:2603		Single bulged A
Not in a motif group		homologous
IL_7RQB_101
IL_37497.2
IL_4V7C_1861/BA/2636:2640,
1/BA/2774:2782		No text annotation
Not in a motif group		homologous
IL_5J7L_345
IL_04638.1
IL_4V7C_1871/BA/2652:2658,
1/BA/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group		homologous
IL_5J7L_346
IL_16458.1
IL_4V7C_1881/BA/2679:2684,
1/BA/2725:2728		No text annotation
Not in a motif group		geometric
IL_5TBW_062
IL_93630.2
IL_4V7C_1891/BA/2687:2691,
1/BA/2718:2722		No text annotation
Not in a motif group		homologous
IL_4WF9_102
IL_08296.3
IL_4V7C_1901/BA/2695:2696,
1/BA/2711:2714		Multiple bulged bases
Not in a motif group		homologous
IL_7A0S_097
IL_71530.2
IL_4V7C_1911/BA/2736:2742,
1/BA/2762:2768		No text annotation
Not in a motif group
IL_4V7C_1931/BA/2806:2811,
1/BA/2889:2892		No text annotation
Not in a motif group		homologous
IL_5J7L_351
IL_49460.2
IL_4V7C_1941/BA/2817:2819,
1/BA/2827:2829		No text annotation
Not in a motif group		geometric
IL_1NBS_006
IL_95997.1
IL_4V7C_1951/BA/2838:2839,
1/BA/2878:2880		Single bulged C
Not in a motif group		homologous
IL_7RQB_108
IL_61258.12
IL_4V7C_1961/BA/2843:2846,
1/BA/2870:2874		Multiple bulged bases with non-canonical cWW
Not in a motif group		homologous
IL_5J7L_353
IL_58764.3
IL_4V7C_1971/BA/2847:2852,
1/BA/2865:2869		No text annotation
Not in a motif group		homologous
IL_7RQB_110
IL_83162.5
IL_4V7C_1981/BB/17:18,
1/BB/65:67		Major groove intercalation
Not in a motif group		homologous
IL_5J7L_355
IL_37497.2
IL_4V7C_1991/BB/23:28,
1/BB/56:60		No text annotation
Not in a motif group		homologous
IL_5J7L_356
IL_18472.2
IL_4V7C_2001/BB/30:38,
1/BB/44:54		No text annotation
Not in a motif group
IL_4V7C_2011/BB/71:79,
1/BB/97:105		Bacterial 5S Loop E
Not in a motif group		homologous
IL_5J7L_359
IL_56455.3

Problematic loops

#loop idProblemSequence
IL_4V7C_009No text annotation
IL_4V7C_040No text annotation
IL_4V7C_043CA cWW
IL_4V7C_052No text annotation
IL_4V7C_053No text annotation
IL_4V7C_061AA cWW
IL_4V7C_071No text annotation
IL_4V7C_072No text annotation
IL_4V7C_073No text annotation
IL_4V7C_076No text annotation
IL_4V7C_082No text annotation
IL_4V7C_084No text annotation
IL_4V7C_126No text annotation
IL_4V7C_127No text annotation
IL_4V7C_132No text annotation
IL_4V7C_133No text annotation
IL_4V7C_157No text annotation
IL_4V7C_160No text annotation
IL_4V7C_163Isolated cWH basepair
IL_4V7C_166No text annotation
IL_4V7C_167No text annotation
IL_4V7C_168No text annotation
IL_4V7C_169No text annotation
IL_4V7C_171No text annotation
IL_4V7C_173No text annotation
IL_4V7C_184No text annotation
IL_4V7C_192No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V7C_0011/AA/826:829,
1/AA/857:861,
1/AA/868:874		No text annotation
Not in a motif group		homologous
J3_5J7L_004
NA
J3_4V7C_0021/AA/955:962,
1/AA/973:984,
1/AA/1221:1225		No text annotation
Not in a motif group
J3_4V7C_0031/AA/990:993,
1/AA/1045:1047,
1/AA/1210:1215		No text annotation
Not in a motif group
J3_4V7C_0041/AA/1002:1006,
1/AA/1023:1028,
1/AA/1033:1038		No text annotation
Not in a motif group
J3_4V7C_0051/AA/1063:1068,
1/AA/1107:1113,
1/AA/1187:1193		No text annotation
Not in a motif group
J3_4V7C_0061/AA/1116:1118,
1/AA/1155:1158,
1/AA/1181:1184		No text annotation
Not in a motif group
J3_4V7C_0071/BA/24:31,
1/BA/474:481,
1/BA/509:516		No text annotation
Not in a motif group
J3_4V7C_0081/BA/55:57,
1/BA/70:76,
1/BA/110:115		No text annotation
Not in a motif group
J3_4V7C_0091/BA/682:689,
1/BA/773:775,
1/BA/791:795		No text annotation
Not in a motif group
J3_4V7C_0101/BA/698:700,
1/BA/732:736,
1/BA/760:763		No text annotation
Not in a motif group		homologous
J3_7RQB_005
NA
J3_4V7C_0111/BA/1298:1303,
1/BA/1625:1627,
1/BA/1639:1642		No text annotation
Not in a motif group		homologous
J3_5J7L_041
NA
J3_4V7C_0121/BA/1306:1309,
1/BA/1605:1611,
1/BA/1620:1622		No text annotation
Not in a motif group		homologous
J3_7A0S_007
NA
J3_4V7C_0131/BA/2091:2093,
1/BA/2196:2200,
1/BA/2223:2228		No text annotation
Not in a motif group		homologous
J3_5J7L_044
NA
J3_4V7C_0141/BA/2295:2299,
1/BA/2317:2323,
1/BA/2332:2337		No text annotation
Not in a motif group
J3_4V7C_0151/BA/2517:2520,
1/BA/2545:2548,
1/BA/2560:2567		No text annotation
Not in a motif group
J3_4V7C_0161/BA/2811:2815,
1/BA/2831:2836,
1/BA/2882:2889		No text annotation
Not in a motif group
J3_4V7C_0171/BB/10:16,
1/BB/68:70,
1/BB/106:110		No text annotation
Not in a motif group		homologous
J3_5J7L_049
NA

Problematic loops

No problematic loops


Coloring options:
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