Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4D5L_0011/1/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_67265.4
HL_4D5L_0021/1/63:85No text annotation
Not in a motif group
HL_4D5L_0031/1/156:162Other HL
Not in a motif group
homologous
HL_4V88_188
HL_43074.18
HL_4D5L_0041/1/196:203No text annotation
Not in a motif group
HL_4D5L_0061/1/322:329T-loop with 1 bulged base
Not in a motif group
geometric
HL_5TBW_005
HL_68493.6
HL_4D5L_0071/1/377:387No text annotation
Not in a motif group
geometric
HL_4WSM_226
HL_87219.4
HL_4D5L_0081/1/416:421No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_18785.1
HL_4D5L_0091/1/441:452No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_22443.1
HL_4D5L_0101/1/462:467UNCG
Not in a motif group
homologous
HL_4V88_196
HL_79299.11
HL_4D5L_0111/1/498:504No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_58912.1
HL_4D5L_0121/1/539:544No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_58912.1
HL_4D5L_0131/1/569:581No text annotation
Not in a motif group
HL_4D5L_0141/1/618:623Other HL
Not in a motif group
homologous
HL_4V88_200
HL_43074.18
HL_4D5L_0151/1/820:828No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_72066.1
HL_4D5L_0161/1/833:841No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98557.5
HL_4D5L_0171/1/884:902No text annotation
Not in a motif group
HL_4D5L_0181/1/957:966No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_87219.4
HL_4D5L_0191/1/994:999Other HL
Not in a motif group
homologous
HL_4V88_207
HL_43074.18
HL_4D5L_0201/1/1054:1064No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_87219.4
HL_4D5L_0211/1/1112:1121No text annotation
Not in a motif group
HL_4D5L_0221/1/1141:1146Other HL
Not in a motif group
homologous
HL_4V88_210
HL_43074.18
HL_4D5L_0231/1/1178:1183GNRA
Not in a motif group
homologous
HL_4V88_211
HL_43074.18
HL_4D5L_0241/1/1245:1254No text annotation
Not in a motif group
homologous
HL_4V88_212
HL_96854.1
HL_4D5L_0251/1/1294:1305No text annotation
Not in a motif group
HL_4D5L_0261/1/1353:1358GNRA
Not in a motif group
homologous
HL_4V88_214
HL_43074.18
HL_4D5L_0271/1/1366:1373No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_54035.7
HL_4D5L_0281/1/1420:1427No text annotation
Not in a motif group
HL_4D5L_0291/1/1459:1467No text annotation
Not in a motif group
geometric
HL_3RG5_006
HL_83315.1
HL_4D5L_0301/1/1565:1570GNRA
Not in a motif group
homologous
HL_4V88_218
HL_43074.18
HL_4D5L_0311/1/1614:1625No text annotation
Not in a motif group
HL_4D5L_0321/1/1658:1666No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_01181.4
HL_4D5L_0331/1/1763:1769GNRA
Not in a motif group
geometric
HL_3SUX_002
HL_43074.18
HL_4D5L_0341/1/1847:1852Other HL
Not in a motif group
homologous
HL_4V88_222
HL_43074.18

Problematic loops

#loop idProblemSequence
HL_4D5L_005No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4D5L_0011/1/23:26,
1/1/648:651
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5C5W_001
IL_85877.10
IL_4D5L_0021/1/34:36,
1/1/519:521
UC cWW
Not in a motif group
homologous
IL_4V88_385
IL_01312.13
IL_4D5L_0031/1/36:40,
1/1/514:519
No text annotation
Not in a motif group
IL_4D5L_0041/1/41:47,
1/1/479:481
No text annotation
Not in a motif group
geometric
IL_4V88_387
IL_34626.4
IL_4D5L_0051/1/49:51,
1/1/476:477
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_06437.11
IL_4D5L_0061/1/56:62,
1/1/86:89
No text annotation
Not in a motif group
IL_4D5L_0071/1/108:112,
1/1/349:353
No text annotation
Not in a motif group
IL_4D5L_0081/1/112:115,
1/1/348:349
Multiple bulged bases
Not in a motif group
homologous
IL_4V88_392
IL_13730.12
IL_4D5L_0091/1/115:121,
1/1/343:348
No text annotation
Not in a motif group
IL_4D5L_0101/1/146:151,
1/1/167:174
No text annotation
Not in a motif group
IL_4D5L_0111/1/152:154,
1/1/164:166
No text annotation
Not in a motif group
homologous
IL_4V88_395
IL_87880.2
IL_4D5L_0121/1/186:192,
1/1/207:213
No text annotation
Not in a motif group
IL_4D5L_0131/1/317:319,
1/1/332:333
No text annotation
Not in a motif group
IL_4D5L_0141/1/359:364,
1/1/396:403
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_29549.9
IL_4D5L_0151/1/366:371,
1/1/393:394
No text annotation
Not in a motif group
geometric
IL_4ERD_001
IL_77771.1
IL_4D5L_0161/1/411:413,
1/1/424:429
No text annotation
Not in a motif group
IL_4D5L_0171/1/437:439,
1/1/454:456
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_42589.6
IL_4D5L_0181/1/459:461,
1/1/468:470
Isolated near basepair
Not in a motif group
homologous
IL_4V88_406
IL_01312.13
IL_4D5L_0191/1/487:489,
1/1/511:512
Single bulged U
Not in a motif group
geometric
IL_5J7L_017
IL_83039.11
IL_4D5L_0201/1/491:495,
1/1/508:509
C-loop
Not in a motif group
geometric
IL_4LFB_015
IL_63596.4
IL_4D5L_0211/1/495:496,
1/1/506:508
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_59137.10
IL_4D5L_0221/1/530:531,
1/1/553:555
Single bulged A
Not in a motif group
homologous
IL_4V88_409
IL_80007.16
IL_4D5L_0231/1/535:539,
1/1/544:549
No text annotation
Not in a motif group
IL_4D5L_0241/1/565:569,
1/1/581:585
No text annotation
Not in a motif group
IL_4D5L_0251/1/599:608,
1/1/635:637
No text annotation
Not in a motif group
geometric
IL_4V88_470
IL_01312.13
IL_4D5L_0261/1/611:617,
1/1/624:632
No text annotation
Not in a motif group
homologous
IL_4V88_415
IL_04667.1
IL_4D5L_0271/1/663:665,
1/1/1162:1164
Isolated cWH basepair
Not in a motif group
geometric
IL_406D_002
IL_42589.6
IL_4D5L_0281/1/673:675,
1/1/1030:1032
No text annotation
Not in a motif group
homologous
IL_4V88_417
IL_01312.13
IL_4D5L_0291/1/676:680,
1/1/1025:1029
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_418
IL_39521.5
IL_4D5L_0301/1/692:694,
1/1/738:739
No text annotation
Not in a motif group
IL_4D5L_0311/1/752:754,
1/1/790:791
No text annotation
Not in a motif group
IL_4D5L_0321/1/802:803,
1/1/860:863
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V88_423
IL_09061.4
IL_4D5L_0331/1/804:807,
1/1/856:859
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_7A0S_040
IL_85877.10
IL_4D5L_0341/1/807:815,
1/1/849:856
No text annotation
Not in a motif group
homologous
IL_4V88_425
IL_69091.1
IL_4D5L_0351/1/877:879,
1/1/907:909
No text annotation
Not in a motif group
geometric
IL_4YHW_001
IL_01312.13
IL_4D5L_0361/1/922:923,
1/1/1019:1022
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4V88_428
IL_70995.6
IL_4D5L_0371/1/925:927,
1/1/1014:1017
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_009
IL_55456.1
IL_4D5L_0381/1/928:931,
1/1/1010:1013
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_430
IL_85877.10
IL_4D5L_0391/1/931:935,
1/1/1007:1010
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_431
IL_85877.10
IL_4D5L_0401/1/942:945,
1/1/981:984
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_432
IL_85877.10
IL_4D5L_0411/1/950:956,
1/1/967:976
No text annotation
Not in a motif group
IL_4D5L_0421/1/1042:1047,
1/1/1071:1073
Other IL
Not in a motif group
homologous
IL_4V88_435
IL_51590.1
IL_4D5L_0431/1/1047:1051,
1/1/1067:1071
tSH-tHW-tHS
Not in a motif group
geometric
IL_4V88_436
IL_39521.5
IL_4D5L_0441/1/1091:1093,
1/1/1152:1158
No text annotation
Not in a motif group
homologous
IL_4V88_437
IL_19557.1
IL_4D5L_0451/1/1098:1101,
1/1/1131:1134
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_438
IL_85877.10
IL_4D5L_0461/1/1101:1103,
1/1/1129:1131
No text annotation
Not in a motif group
geometric
IL_5UNE_009
IL_01312.13
IL_4D5L_0471/1/1108:1110,
1/1/1123:1124
Single bulged U
Not in a motif group
homologous
IL_4V88_439
IL_83039.11
IL_4D5L_0481/1/1168:1175,
1/1/1186:1191
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4V88_440
IL_24606.1
IL_4D5L_0491/1/1202:1205,
1/1/1693:1697
No text annotation
Not in a motif group
IL_4D5L_0501/1/1206:1210,
1/1/1689:1692
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1D4R_001
IL_85877.10
IL_4D5L_0511/1/1213:1217,
1/1/1681:1686
No text annotation
Not in a motif group
IL_4D5L_0521/1/1230:1232,
1/1/1526:1528
No text annotation
Not in a motif group
homologous
IL_4V88_444
IL_01312.13
IL_4D5L_0531/1/1235:1236,
1/1/1521:1523
Minor groove platform
Not in a motif group
homologous
IL_4V88_445
IL_06437.11
IL_4D5L_0541/1/1269:1272,
1/1/1510:1513
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4EYA_008
IL_85877.10
IL_4D5L_0551/1/1281:1290,
1/1/1309:1316
No text annotation
Not in a motif group
IL_4D5L_0561/1/1291:1293,
1/1/1306:1308
No text annotation
Not in a motif group
homologous
IL_4V88_448
IL_01312.13
IL_4D5L_0571/1/1325:1327,
1/1/1502:1503
Single bulged U
Not in a motif group
homologous
IL_4V88_449
IL_83039.11
IL_4D5L_0581/1/1328:1333,
1/1/1498:1501
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_473
IL_85877.10
IL_4D5L_0591/1/1333:1335,
1/1/1492:1498
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_4V88_451
IL_09768.1
IL_4D5L_0601/1/1337:1338,
1/1/1488:1490
Single bulged A
Not in a motif group
homologous
IL_4V88_452
IL_80007.16
IL_4D5L_0611/1/1347:1349,
1/1/1380:1382
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_453
IL_42589.6
IL_4D5L_0621/1/1395:1397,
1/1/1448:1450
No text annotation
Not in a motif group
geometric
IL_5UNE_001
IL_01312.13
IL_4D5L_0631/1/1397:1399,
1/1/1447:1448
No text annotation
Not in a motif group
IL_4D5L_0641/1/1401:1406,
1/1/1440:1445
No text annotation
Not in a motif group
IL_4D5L_0651/1/1408:1413,
1/1/1433:1438
No text annotation
Not in a motif group
IL_4D5L_0661/1/1415:1419,
1/1/1428:1431
No text annotation
Not in a motif group
IL_4D5L_0671/1/1537:1539,
1/1/1594:1596
No text annotation
Not in a motif group
geometric
IL_6OL3_002
IL_01312.13
IL_4D5L_0681/1/1550:1558,
1/1/1577:1582
No text annotation
Not in a motif group
IL_4D5L_0691/1/1559:1562,
1/1/1573:1576
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_461
IL_85877.10
IL_4D5L_0701/1/1604:1610,
1/1/1629:1635
No text annotation
Not in a motif group
IL_4D5L_0711/1/1700:1702,
1/1/1833:1836
No text annotation
Not in a motif group
homologous
IL_4V88_463
IL_36143.2
IL_4D5L_0721/1/1702:1705,
1/1/1829:1833
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_59281.1
IL_4D5L_0731/1/1706:1708,
1/1/1826:1828
No text annotation
Not in a motif group
homologous
IL_4V88_465
IL_01312.13
IL_4D5L_0741/1/1708:1711,
1/1/1822:1826
Non canonical cWW and near pair
Not in a motif group
geometric
IL_4V88_466
IL_85877.10
IL_4D5L_0751/1/1713:1716,
1/1/1817:1820
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6CZR_168
IL_85877.10
IL_4D5L_0761/1/1717:1720,
1/1/1813:1816
Double sheared
Not in a motif group
geometric
IL_4V88_468
IL_09705.7
IL_4D5L_0771/1/1720:1722,
1/1/1812:1813
No text annotation
Not in a motif group
IL_4D5L_0781/1/1729:1731,
1/1/1803:1805
No text annotation
Not in a motif group
homologous
IL_4V88_470
IL_01312.13
IL_4D5L_0791/1/1733:1736,
1/1/1798:1801
Double sheared
Not in a motif group
homologous
IL_4V88_471
IL_09705.7
IL_4D5L_0801/1/1739:1742,
1/1/1792:1795
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_473
IL_85877.10
IL_4D5L_0811/1/1742:1747,
1/1/1787:1792
No text annotation
Not in a motif group
IL_4D5L_0821/1/1750:1752,
1/1/1780:1784
No text annotation
Not in a motif group
homologous
IL_4V88_475
IL_01312.13

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4D5L_0011/1/40:41,
1/1/481:487,
1/1/512:514
No text annotation
Not in a motif group
J3_4D5L_0021/1/681:684,
1/1/918:922,
1/1/1022:1024
No text annotation
Not in a motif group
J3_4D5L_0031/1/816:819,
1/1/829:831,
1/1/843:848
No text annotation
Not in a motif group
J3_4D5L_0041/1/938:941,
1/1/985:993,
1/1/1000:1004
No text annotation
Not in a motif group
homologous
J3_4V88_033
NA
J3_4D5L_0051/1/1094:1097,
1/1/1135:1140,
1/1/1147:1151
No text annotation
Not in a motif group
J3_4D5L_0061/1/1218:1221,
1/1/1645:1651,
1/1/1673:1680
No text annotation
Not in a motif group
J3_4D5L_0071/1/1237:1245,
1/1/1254:1266,
1/1/1516:1520
No text annotation
Not in a motif group
J3_4D5L_0081/1/1272:1277,
1/1/1320:1324,
1/1/1504:1510
No text annotation
Not in a motif group
J3_4D5L_0091/1/1340:1345,
1/1/1384:1389,
1/1/1481:1486
No text annotation
Not in a motif group
homologous
J3_4V88_039
NA
J3_4D5L_0101/1/1350:1351,
1/1/1360:1365,
1/1/1374:1379
No text annotation
Not in a motif group

Problematic loops

No problematic loops


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