Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ZQF_0011/D3/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_6ZQF_0021/D3/70:81No text annotation
Not in a motif group
homologous
HL_4V88_187
HL_59267.1
HL_6ZQF_0031/D3/154:160Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.4
HL_6ZQF_0041/D3/190:195No text annotation
Not in a motif group
homologous
HL_4V88_189
HL_77805.2
HL_6ZQF_0051/D3/230:235No text annotation
Not in a motif group
geometric
HL_6CZR_082
HL_03562.2
HL_6ZQF_0061/D3/243:250T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V88_191
HL_56241.1
HL_6ZQF_0071/D3/276:279No text annotation
Not in a motif group
geometric
HL_4WF9_037
HL_53837.2
HL_6ZQF_0081/D3/330:338No text annotation
Not in a motif group
homologous
HL_4V88_193
HL_69023.2
HL_6ZQF_0091/D3/367:374No text annotation
Not in a motif group
geometric
HL_361D_002
HL_90617.2
HL_6ZQF_0101/D3/393:404No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_6ZQF_0111/D3/414:419UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_6ZQF_0121/D3/450:456No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_26380.1
HL_6ZQF_0131/D3/491:496No text annotation
Not in a motif group
homologous
HL_4V88_198
HL_91104.1
HL_6ZQF_0141/D3/520:532No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_06285.3
HL_6ZQF_0151/D3/561:566No text annotation
Not in a motif group
geometric
HL_4V9F_011
HL_70546.1
HL_6ZQF_0161/D3/703:735No text annotation
Not in a motif group
HL_6ZQF_0171/D3/764:772No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_6ZQF_0181/D3/777:783No text annotation
Not in a motif group
homologous
HL_4V88_204
HL_97896.2
HL_6ZQF_0191/D3/829:843No text annotation
Not in a motif group
homologous
HL_4V88_205
HL_96598.1
HL_6ZQF_0201/D3/900:909No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_6ZQF_0211/D3/937:942Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_6ZQF_0221/D3/997:1007No text annotation
Not in a motif group
HL_6ZQF_0231/D3/1055:1064No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_6ZQF_0241/D3/1084:1089Other HL
Not in a motif group
homologous
HL_4V88_210
HL_35490.1
HL_6ZQF_0261/D3/1501:1506GNRA
Not in a motif group
homologous
HL_4V88_218
HL_35490.1
HL_6ZQF_0271/D3/1550:1561No text annotation
Not in a motif group
homologous
HL_4V88_219
HL_22554.1
HL_6ZQF_0281/D3/1594:1602No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_70072.1
HL_6ZQF_0291/D3/1629:1636No text annotation
Not in a motif group
HL_6ZQF_0301/D3/1778:1783No text annotation
Not in a motif group
geometric
HL_6AAX_001
HL_89098.2

Problematic loops

#loop idProblemSequence
HL_6ZQF_025No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ZQF_0011/D3/35:37,
1/D3/471:473
UU cWW
Not in a motif group
geometric
IL_1ZZ5_004
IL_70707.1
IL_6ZQF_0021/D3/37:41,
1/D3/466:471
No text annotation
Not in a motif group
IL_6ZQF_0031/D3/50:52,
1/D3/428:429
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_42622.3
IL_6ZQF_0041/D3/58:63,
1/D3/87:89
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_95004.1
IL_6ZQF_0051/D3/64:69,
1/D3/82:86
No text annotation
Not in a motif group
homologous
IL_4V88_390
IL_77691.2
IL_6ZQF_0061/D3/109:112,
1/D3/302:305
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_391
IL_30621.3
IL_6ZQF_0071/D3/113:116,
1/D3/300:301
Multiple bulged bases
Not in a motif group
homologous
IL_4V88_392
IL_44546.1
IL_6ZQF_0081/D3/117:122,
1/D3/295:299
No text annotation
Not in a motif group
homologous
IL_4V88_393
IL_64181.2
IL_6ZQF_0091/D3/143:149,
1/D3/165:172
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4V88_394
IL_80604.2
IL_6ZQF_0101/D3/150:152,
1/D3/162:164
Isolated cWH basepair
Not in a motif group
geometric
IL_3R1C_012
IL_70707.1
IL_6ZQF_0111/D3/186:189,
1/D3/196:199
Double sheared
Not in a motif group
homologous
IL_4V88_396
IL_09705.10
IL_6ZQF_0121/D3/204:206,
1/D3/259:263
Major groove platform with extra cWW
Not in a motif group
geometric
IL_4V88_397
IL_05564.2
IL_6ZQF_0131/D3/206:208,
1/D3/257:259
No text annotation
Not in a motif group
homologous
IL_4V88_398
IL_86319.2
IL_6ZQF_0141/D3/265:267,
1/D3/288:289
Single bulged A
Not in a motif group
homologous
IL_4V88_399
IL_37497.5
IL_6ZQF_0151/D3/270:273,
1/D3/283:285
No text annotation
Not in a motif group
homologous
IL_4V88_400
IL_47298.1
IL_6ZQF_0161/D3/275:276,
1/D3/279:281
Single bulged U
Not in a motif group
homologous
IL_4V88_401
IL_83039.16
IL_6ZQF_0171/D3/311:316,
1/D3/348:355
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_45067.2
IL_6ZQF_0181/D3/318:323,
1/D3/345:346
No text annotation
Not in a motif group
geometric
IL_5Y58_001
IL_48100.2
IL_6ZQF_0191/D3/363:365,
1/D3/376:381
No text annotation
Not in a motif group
homologous
IL_4V88_404
IL_11347.1
IL_6ZQF_0201/D3/389:391,
1/D3/406:408
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_70707.1
IL_6ZQF_0211/D3/411:413,
1/D3/420:422
Isolated near basepair
Not in a motif group
homologous
IL_4V88_406
IL_52767.4
IL_6ZQF_0221/D3/439:441,
1/D3/463:464
Single bulged U
Not in a motif group
geometric
IL_4V88_407
IL_83039.16
IL_6ZQF_0231/D3/443:448,
1/D3/458:461
C-loop with extra cWW pair
Not in a motif group
homologous
IL_4V88_408
IL_93630.2
IL_6ZQF_0241/D3/480:485,
1/D3/502:508
No text annotation
Not in a motif group
IL_6ZQF_0251/D3/517:518,
1/D3/533:535
Minor groove platform
Not in a motif group
geometric
IL_4V88_388
IL_42622.3
IL_6ZQF_0261/D3/518:520,
1/D3/532:533
Minor groove platform
Not in a motif group
geometric
IL_4V88_412
IL_42622.3
IL_6ZQF_0271/D3/551:552,
1/D3/584:587
Multiple bulged bases
Not in a motif group
geometric
IL_7A0S_090
IL_71530.2
IL_6ZQF_0281/D3/552:559,
1/D3/568:584
No text annotation
Not in a motif group
IL_6ZQF_0291/D3/616:622,
1/D3/1104:1105
No text annotation
Not in a motif group
homologous
IL_4V88_416
IL_69996.1
IL_6ZQF_0301/D3/624:626,
1/D3/973:975
No text annotation
Not in a motif group
homologous
IL_4V88_417
IL_86319.2
IL_6ZQF_0311/D3/627:631,
1/D3/968:972
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_418
IL_17136.1
IL_6ZQF_0321/D3/646:648,
1/D3/686:688
No text annotation
Not in a motif group
homologous
IL_4V88_419
IL_86319.2
IL_6ZQF_0331/D3/652:658,
1/D3/676:682
No text annotation
Not in a motif group
IL_6ZQF_0341/D3/745:747,
1/D3/802:806
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_6ZQF_0351/D3/748:750,
1/D3/799:801
No text annotation
Not in a motif group
homologous
IL_4V88_424
IL_86319.2
IL_6ZQF_0361/D3/751:759,
1/D3/791:798
No text annotation
Not in a motif group
homologous
IL_4V88_425
IL_69091.1
IL_6ZQF_0371/D3/817:824,
1/D3/848:854
No text annotation
Not in a motif group
IL_6ZQF_0381/D3/865:866,
1/D3/962:965
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4V88_428
IL_50694.2
IL_6ZQF_0391/D3/867:870,
1/D3/957:961
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_429
IL_30621.3
IL_6ZQF_0401/D3/871:874,
1/D3/953:956
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_430
IL_30621.3
IL_6ZQF_0411/D3/874:878,
1/D3/950:953
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_431
IL_30621.3
IL_6ZQF_0421/D3/885:888,
1/D3/924:927
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_432
IL_30621.3
IL_6ZQF_0431/D3/893:895,
1/D3/917:919
No text annotation
Not in a motif group
homologous
IL_4V88_433
IL_86319.2
IL_6ZQF_0441/D3/895:899,
1/D3/910:917
Kink-turn
Not in a motif group
geometric
IL_4V88_434
IL_45067.2
IL_6ZQF_0451/D3/985:990,
1/D3/1014:1016
Other IL
Not in a motif group
geometric
IL_4V88_435
IL_22046.1
IL_6ZQF_0461/D3/990:994,
1/D3/1010:1014
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_436
IL_17136.1
IL_6ZQF_0471/D3/1034:1036,
1/D3/1095:1101
No text annotation
Not in a motif group
homologous
IL_4V88_437
IL_19557.3
IL_6ZQF_0481/D3/1041:1044,
1/D3/1074:1077
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_438
IL_30621.3
IL_6ZQF_0491/D3/1051:1053,
1/D3/1066:1067
Single bulged U
Not in a motif group
homologous
IL_4V88_439
IL_83039.16
IL_6ZQF_0501/D3/1116:1120,
1/D4/5:8
No text annotation
Not in a motif group
IL_6ZQF_0511/D3/1157:1160,
1/D3/1617:1621
C-loop
Not in a motif group
homologous
IL_4V88_443
IL_63596.6
IL_6ZQF_0521/D3/1173:1175,
1/D3/1464:1466
No text annotation
Not in a motif group
homologous
IL_4V88_444
IL_86319.2
IL_6ZQF_0531/D3/1480:1487,
1/D3/1519:1527
No text annotation
Not in a motif group
homologous
IL_4V88_459
IL_10447.1
IL_6ZQF_0541/D3/1488:1494,
1/D3/1513:1518
No text annotation
Not in a motif group
homologous
IL_4V88_460
IL_75461.4
IL_6ZQF_0551/D3/1495:1498,
1/D3/1509:1512
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_461
IL_30621.3
IL_6ZQF_0561/D3/1540:1545,
1/D3/1566:1571
No text annotation
Not in a motif group
geometric
IL_4V88_462
IL_19954.2
IL_6ZQF_0571/D3/1650:1652,
1/D3/1748:1750
AA cWW
Not in a motif group
homologous
IL_4V88_467
IL_86319.2

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ZQF_0011/D3/41:48,
1/D3/431:439,
1/D3/464:466
No text annotation
Not in a motif group
J3_6ZQF_0021/D3/633:635,
1/D3/861:865,
1/D3/965:966
No text annotation
Not in a motif group
J3_6ZQF_0031/D3/760:763,
1/D3/773:775,
1/D3/785:790
No text annotation
Not in a motif group
homologous
J3_4V88_032
NA
J3_6ZQF_0041/D3/881:884,
1/D3/928:936,
1/D3/943:947
No text annotation
Not in a motif group
homologous
J3_4V88_033
NA
J3_6ZQF_0051/D3/1037:1039,
1/D3/1079:1083,
1/D3/1090:1094
No text annotation
Not in a motif group
homologous
J3_4V88_034
NA
J3_6ZQF_0061/D3/1150:1151,
1/D3/1627:1629,
1/D3/1636:1640
No text annotation
Not in a motif group
J3_6ZQF_0071/D3/1168:1171,
1/D3/1468:1470,
1/D3/1574:1577
No text annotation
Not in a motif group
homologous
J3_4V88_036
NA
J3_6ZQF_0081/D3/1470:1474,
1/D3/1533:1540,
1/D3/1571:1574
No text annotation
Not in a motif group
homologous
J3_4V88_041
NA

Problematic loops

No problematic loops


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