6ZQF Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6ZQF_001 | 1/D3/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6ZQF_002 | 1/D3/70:81 | No text annotation Not in a motif group | homologous HL_4V88_187 HL_59267.1 | |
| HL_6ZQF_003 | 1/D3/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.6 | |
| HL_6ZQF_004 | 1/D3/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
| HL_6ZQF_005 | 1/D3/230:235 | No text annotation Not in a motif group | geometric HL_6CZR_082 HL_29960.1 | |
| HL_6ZQF_006 | 1/D3/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_56241.2 | |
| HL_6ZQF_007 | 1/D3/276:279 | No text annotation Not in a motif group | geometric HL_4WF9_037 HL_40039.1 | |
| HL_6ZQF_008 | 1/D3/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.3 | |
| HL_6ZQF_009 | 1/D3/367:374 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.4 | |
| HL_6ZQF_010 | 1/D3/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6ZQF_011 | 1/D3/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_29960.1 | |
| HL_6ZQF_012 | 1/D3/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_26380.1 | |
| HL_6ZQF_013 | 1/D3/491:496 | No text annotation Not in a motif group | homologous HL_4V88_198 HL_91104.2 | |
| HL_6ZQF_014 | 1/D3/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.3 | |
| HL_6ZQF_015 | 1/D3/561:566 | No text annotation Not in a motif group | geometric HL_4V9F_011 HL_70546.2 | |
| HL_6ZQF_016 | 1/D3/703:735 | No text annotation Not in a motif group | ||
| HL_6ZQF_017 | 1/D3/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6ZQF_018 | 1/D3/777:783 | No text annotation Not in a motif group | homologous HL_4V88_204 HL_97896.2 | |
| HL_6ZQF_019 | 1/D3/829:843 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.2 | |
| HL_6ZQF_020 | 1/D3/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.2 | |
| HL_6ZQF_021 | 1/D3/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.3 | |
| HL_6ZQF_022 | 1/D3/997:1007 | No text annotation Not in a motif group | ||
| HL_6ZQF_023 | 1/D3/1055:1064 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_6ZQF_024 | 1/D3/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_85603.1 | |
| HL_6ZQF_026 | 1/D3/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_85603.1 | |
| HL_6ZQF_027 | 1/D3/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_75768.1 | |
| HL_6ZQF_028 | 1/D3/1594:1602 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_40039.1 | |
| HL_6ZQF_029 | 1/D3/1629:1636 | No text annotation Not in a motif group | ||
| HL_6ZQF_030 | 1/D3/1778:1783 | No text annotation Not in a motif group | geometric HL_6AAX_001 HL_40039.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6ZQF_025 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6ZQF_001 | 1/D3/35:37, 1/D3/471:473 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_70707.3 | |
| IL_6ZQF_002 | 1/D3/37:41, 1/D3/466:471 | No text annotation Not in a motif group | ||
| IL_6ZQF_003 | 1/D3/50:52, 1/D3/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_80097.2 | |
| IL_6ZQF_004 | 1/D3/58:63, 1/D3/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6ZQF_005 | 1/D3/64:69, 1/D3/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.2 | |
| IL_6ZQF_006 | 1/D3/109:112, 1/D3/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.4 | |
| IL_6ZQF_007 | 1/D3/113:116, 1/D3/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.2 | |
| IL_6ZQF_008 | 1/D3/117:122, 1/D3/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6ZQF_009 | 1/D3/143:149, 1/D3/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6ZQF_010 | 1/D3/150:152, 1/D3/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_70707.3 | |
| IL_6ZQF_011 | 1/D3/186:189, 1/D3/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.11 | |
| IL_6ZQF_012 | 1/D3/204:206, 1/D3/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.3 | |
| IL_6ZQF_013 | 1/D3/206:208, 1/D3/257:259 | No text annotation Not in a motif group | homologous IL_4V88_398 IL_86319.3 | |
| IL_6ZQF_014 | 1/D3/265:267, 1/D3/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.7 | |
| IL_6ZQF_015 | 1/D3/270:273, 1/D3/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6ZQF_016 | 1/D3/275:276, 1/D3/279:281 | Single bulged U Not in a motif group | homologous IL_4V88_401 IL_83039.17 | |
| IL_6ZQF_017 | 1/D3/311:316, 1/D3/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.3 | |
| IL_6ZQF_018 | 1/D3/318:323, 1/D3/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6ZQF_019 | 1/D3/363:365, 1/D3/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6ZQF_020 | 1/D3/389:391, 1/D3/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_70707.3 | |
| IL_6ZQF_021 | 1/D3/411:413, 1/D3/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.5 | |
| IL_6ZQF_022 | 1/D3/439:441, 1/D3/463:464 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.17 | |
| IL_6ZQF_023 | 1/D3/443:448, 1/D3/458:461 | C-loop with extra cWW pair Not in a motif group | homologous IL_4V88_408 IL_93630.2 | |
| IL_6ZQF_024 | 1/D3/480:485, 1/D3/502:508 | No text annotation Not in a motif group | ||
| IL_6ZQF_025 | 1/D3/517:518, 1/D3/533:535 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_80097.2 | |
| IL_6ZQF_026 | 1/D3/518:520, 1/D3/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_80097.2 | |
| IL_6ZQF_027 | 1/D3/551:552, 1/D3/584:587 | Multiple bulged bases Not in a motif group | geometric IL_7A0S_090 IL_71530.3 | |
| IL_6ZQF_028 | 1/D3/552:559, 1/D3/568:584 | No text annotation Not in a motif group | ||
| IL_6ZQF_029 | 1/D3/616:622, 1/D3/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_38186.1 | |
| IL_6ZQF_030 | 1/D3/624:626, 1/D3/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_86319.3 | |
| IL_6ZQF_031 | 1/D3/627:631, 1/D3/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.2 | |
| IL_6ZQF_032 | 1/D3/646:648, 1/D3/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_86319.3 | |
| IL_6ZQF_033 | 1/D3/652:658, 1/D3/676:682 | No text annotation Not in a motif group | ||
| IL_6ZQF_034 | 1/D3/745:747, 1/D3/802:806 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.3 | |
| IL_6ZQF_035 | 1/D3/748:750, 1/D3/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_86319.3 | |
| IL_6ZQF_036 | 1/D3/751:759, 1/D3/791:798 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_6ZQF_037 | 1/D3/817:824, 1/D3/848:854 | No text annotation Not in a motif group | ||
| IL_6ZQF_038 | 1/D3/865:866, 1/D3/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.3 | |
| IL_6ZQF_039 | 1/D3/867:870, 1/D3/957:961 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.4 | |
| IL_6ZQF_040 | 1/D3/871:874, 1/D3/953:956 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_30621.4 | |
| IL_6ZQF_041 | 1/D3/874:878, 1/D3/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.4 | |
| IL_6ZQF_042 | 1/D3/885:888, 1/D3/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.4 | |
| IL_6ZQF_043 | 1/D3/893:895, 1/D3/917:919 | No text annotation Not in a motif group | homologous IL_4V88_433 IL_86319.3 | |
| IL_6ZQF_044 | 1/D3/895:899, 1/D3/910:917 | Kink-turn Not in a motif group | geometric IL_4V88_434 IL_45067.3 | |
| IL_6ZQF_045 | 1/D3/985:990, 1/D3/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_6ZQF_046 | 1/D3/990:994, 1/D3/1010:1014 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.2 | |
| IL_6ZQF_047 | 1/D3/1034:1036, 1/D3/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6ZQF_048 | 1/D3/1041:1044, 1/D3/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.4 | |
| IL_6ZQF_049 | 1/D3/1051:1053, 1/D3/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.17 | |
| IL_6ZQF_050 | 1/D3/1116:1120, 1/D4/5:8 | No text annotation Not in a motif group | ||
| IL_6ZQF_051 | 1/D3/1157:1160, 1/D3/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.7 | |
| IL_6ZQF_052 | 1/D3/1173:1175, 1/D3/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_86319.3 | |
| IL_6ZQF_053 | 1/D3/1480:1487, 1/D3/1519:1527 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_6ZQF_054 | 1/D3/1488:1494, 1/D3/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_6ZQF_055 | 1/D3/1495:1498, 1/D3/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.4 | |
| IL_6ZQF_056 | 1/D3/1540:1545, 1/D3/1566:1571 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_6ZQF_057 | 1/D3/1650:1652, 1/D3/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_86319.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6ZQF_001 | 1/D3/41:48, 1/D3/431:439, 1/D3/464:466 | No text annotation Not in a motif group | ||
| J3_6ZQF_002 | 1/D3/633:635, 1/D3/861:865, 1/D3/965:966 | No text annotation Not in a motif group | ||
| J3_6ZQF_003 | 1/D3/760:763, 1/D3/773:775, 1/D3/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_6ZQF_004 | 1/D3/881:884, 1/D3/928:936, 1/D3/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6ZQF_005 | 1/D3/1037:1039, 1/D3/1079:1083, 1/D3/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6ZQF_006 | 1/D3/1150:1151, 1/D3/1627:1629, 1/D3/1636:1640 | No text annotation Not in a motif group | ||
| J3_6ZQF_007 | 1/D3/1168:1171, 1/D3/1468:1470, 1/D3/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_6ZQF_008 | 1/D3/1470:1474, 1/D3/1533:1540, 1/D3/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA |
Problematic loops
No problematic loops
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